BAC Information

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BAC

Clone NameB6Ng01-152L12
Chromosome5 (Build37)
Map Location 120,526,473 - 120,671,779
singlet/doubletdoublet
Overlap geneRbm19
Upstream geneEG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
Downstream geneLOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152L12.bB6Ng01-152L12.g
ACCDH948224DH948225
length1,055862
definitionDH948224|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L12, 5' end.DH948225|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,670,720 - 120,671,779)(120,526,473 - 120,527,327)
sequence
gaattccagagtctttcaggtcccgccaggccctgcagacagtgacattt
tacacggttcccctttggtcagctctgggcagtgataacaggattaggct
tccaggcagatcacttaattaaactttggaaaagcgcgctctcttgcttt
ctccttcttcgcagctggaggggaggggctggcgcctgaagggccagatg
tggaccccacccatcattttcacgaatacatccaacctctggggactgag
ggtgtggcatgggtggtacagggagggccagactccatccctccctgtct
gtcacttgccccttgtccattctcagaagaactagggagaaccctgctga
tcccaagaggctgtagaggttcatttgcaccttaaagctcctcccactaa
aggggtggagtctatctttccacctcttgagtttgagttccttccactaa
agagcagaatacgttttcctgtccttaaactttggcccatccaccctaga
ttctgggtgtgttcttggacccaattgtctgggccaggctaagctggtca
ctgtgacctaatttggccaagggactgtggggaaagctaaggtgttcgag
ctgagccaagagcccgcaagaccctgaagaccctgtggcttctcactccc
acattgaaagtaagctgggacgtgatctcctaatgccacattctcaacaa
cagagaccagtctagactacctgtcagccaatgaatgctctatcggagcg
agaagccagtctagatccacagaggcacccagcaacctttcactgagcag
aggtacctgagagtgaagggttaaaatctggcgaaccatgatgcagagac
ttgcattatgtgatgcttatggtactggggtatccacagggtactggggg
cattgtttcacagcagtgttaattccacctcattacctacttccctatta
cctcacttgtcctcatcctccaacttcttcaatcaggaacatgtcatgcc
ctcaaaaacatgtcccaaatgagccgatcaatgagcatcacggcccttct
tgtgc
gaattcagatccaagaaccaatgttttagggctcacagtcacttagaact
ccagctccaagggatctcacacattcttctggcctctgtggacacacaca
cacacacacacacacacactccttttaacaatagaagttacctatagtag
ccttttactaccatctgccccacagctccaggaccaagaatgttcctatg
agaatcacacggaccaaggatcagcctgcctgaaccagttgttagccttg
gagaacaaagctcaaaggacccaggcaagatcagttattttaactggaag
gtaggatgcgtatgcctacctcataggaccttcaagagctagatgagttg
agcatttgagttcagagctcagtgctcggcgtacagccagtctctcaacg
agtcctgcacaccctccacttgtgtgtatctgagtcagggcctcttgtct
tcttgaaggcctggatagcaaatctgctttgaaaaacaggactggtgttt
ctctggagggtggtgggtttatttgggatccagggtactaaagacaaatg
tcttttccagcaaatgtcaggtaagcgggacttgtagctcccaatggtct
ccaaaatccagggcctcccatctgggatgtgagggagtgtggtggccatc
taggctcatcaaggtcacccatgaaggactttttctttttctttctttct
tttcttttttatttaaagaatcattttattttatgtatgtgagtacacag
tagcttgttttctgacacacttggaagagggcttcttgatcccattacag
atggtgtgagtcaccctgtggttgcttgggaatttgaactcaggaccttc
tggaagacagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_120670720_120671779
seq2: B6Ng01-152L12.b_45_1099 (reverse)

seq1  GCACAAGGAGGGGCCGTGTATGCTCATTGATCGGCTCATTTGGGACATGT  50
      |||||| || |||||||| |||||||||||||||||||||||||||||||
seq2  GCACAA-GAAGGGCCGTG-ATGCTCATTGATCGGCTCATTTGGGACATGT  48

seq1  TTTTGAGGGCCTGACATGTTCCTGATTGGAGAGTTTGGAGGATGAGGGAC  100
      |||||||||| ||||||||||||||||| |||  ||||||||||| ||||
seq2  TTTTGAGGGCATGACATGTTCCTGATTGAAGAAGTTGGAGGATGA-GGAC  97

seq1  AAGTGAGGTAATAGGGAAGTAGGTAATGAGGGTGGAATTAACACTGCTGT  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGTGAGGTAATAGGGAAGTAGGTAATGA-GGTGGAATTAACACTGCTGT  146

seq1  GAAACAAATGCCCCCAGTACCCTGTGGATACCCCAGTACCATAAGCATCA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAC-AATGCCCCCAGTACCCTGTGGATACCCCAGTACCATAAGCATCA  195

seq1  CATGATGCAAGTCTCTGCATCATGGTTCGCCAGATTTTAACCCTTCACTC  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGCAAGTCTCTGCATCATGGTTCGCCAGATTTTAACCCTTCACTC  245

seq1  TCAGGTACCTCTGCTCAGTGAAAGGTTGCTGGGTGCCTCTGTGGATCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTACCTCTGCTCAGTGAAAGGTTGCTGGGTGCCTCTGTGGATCTAG  295

seq1  ACTGGCTTCTCGCTCCGATAGAGCATTCATTGGCTGACAGGTAGTCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTCTCGCTCCGATAGAGCATTCATTGGCTGACAGGTAGTCTAGA  345

seq1  CTGGTCTCTGTTGTTGAGAATGTGGCATTAGGAGATCACGTCCCAGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTCTGTTGTTGAGAATGTGGCATTAGGAGATCACGTCCCAGCTTA  395

seq1  CTTTCAATGTGGGAGTGAGAAGCCACAGGGTCTTCAGGGTCTTGCGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATGTGGGAGTGAGAAGCCACAGGGTCTTCAGGGTCTTGCGGGCT  445

seq1  CTTGGCTCAGCTCGAACACCTTAGCTTTCCCCACAGTCCCTTGGCCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCAGCTCGAACACCTTAGCTTTCCCCACAGTCCCTTGGCCAAAT  495

seq1  TAGGTCACAGTGACCAGCTTAGCCTGGCCCAGACAATTGGGTCCAAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCACAGTGACCAGCTTAGCCTGGCCCAGACAATTGGGTCCAAGAAC  545

seq1  ACACCCAGAATCTAGGGTGGATGGGCCAAAGTTTAAGGACAGGAAAACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGAATCTAGGGTGGATGGGCCAAAGTTTAAGGACAGGAAAACGT  595

seq1  ATTCTGCTCTTTAGTGGAAGGAACTCAAACTCAAGAGGTGGAAAGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTCTTTAGTGGAAGGAACTCAAACTCAAGAGGTGGAAAGATAGA  645

seq1  CTCCACCCCTTTAGTGGGAGGAGCTTTAAGGTGCAAATGAACCTCTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCCTTTAGTGGGAGGAGCTTTAAGGTGCAAATGAACCTCTACAG  695

seq1  CCTCTTGGGATCAGCAGGGTTCTCCCTAGTTCTTCTGAGAATGGACAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGGATCAGCAGGGTTCTCCCTAGTTCTTCTGAGAATGGACAAGG  745

seq1  GGCAAGTGACAGACAGGGAGGGATGGAGTCTGGCCCTCCCTGTACCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTGACAGACAGGGAGGGATGGAGTCTGGCCCTCCCTGTACCACCC  795

seq1  ATGCCACACCCTCAGTCCCCAGAGGTTGGATGTATTCGTGAAAATGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACACCCTCAGTCCCCAGAGGTTGGATGTATTCGTGAAAATGATGG  845

seq1  GTGGGGTCCACATCTGGCCCTTCAGGCGCCAGCCCCTCCCCTCCAGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTCCACATCTGGCCCTTCAGGCGCCAGCCCCTCCCCTCCAGCTGC  895

seq1  GAAGAAGGAGAAAGCAAGAGAGCGCGCTTTTCCAAAGTTTAATTAAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAGAAAGCAAGAGAGCGCGCTTTTCCAAAGTTTAATTAAGTGA  945

seq1  TCTGCCTGGAAGCCTAATCCTGTTATCACTGCCCAGAGCTGACCAAAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGGAAGCCTAATCCTGTTATCACTGCCCAGAGCTGACCAAAGGG  995

seq1  GAACCGTGTAAAATGTCACTGTCTGCAGGGCCTGGCGGGACCTGAAAGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGTGTAAAATGTCACTGTCTGCAGGGCCTGGCGGGACCTGAAAGAC  1045

seq1  TCTGGAATTC  1060
      ||||||||||
seq2  TCTGGAATTC  1055

seq1: chr5_120526473_120527327
seq2: B6Ng01-152L12.g_70_931

seq1  GAATTCAGATCCAAGAACCAATGTTTTAGGGCTCACAGTCACTTAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCAAGAACCAATGTTTTAGGGCTCACAGTCACTTAGAACT  50

seq1  CCAGCTCCAAGGGATCTCACACATTCTTCTGGCCTCTGTGGACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCAAGGGATCTCACACATTCTTCTGGCCTCTGTGGACACACACA  100

seq1  CACACACACACACACACACTCCTTTTAACAATAGAAGTTACCTATAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACTCCTTTTAACAATAGAAGTTACCTATAGTAG  150

seq1  CCTTTTACTACCATCTGCCCCACAGCTCCAGGACCAAGAATGTTCCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTACTACCATCTGCCCCACAGCTCCAGGACCAAGAATGTTCCTATG  200

seq1  AGAATCACACGGACCAAGGATCAGCCTGCCTGAACCAGTTGTTAGCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACACGGACCAAGGATCAGCCTGCCTGAACCAGTTGTTAGCCTTG  250

seq1  GAGAACAAAGCTCAAAGGACCCAGGCAAGATCAGTTATTTTAACTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAAGCTCAAAGGACCCAGGCAAGATCAGTTATTTTAACTGGAAG  300

seq1  GTAGGATGCGTATGCCTACCTCATAGGACCTTCAAGAGCTAGATGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGCGTATGCCTACCTCATAGGACCTTCAAGAGCTAGATGAGTTG  350

seq1  AGCATTTGAGTTCAGAGCTCAGTGCTCGGCGTACAGCCAGTCTCTCAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGAGTTCAGAGCTCAGTGCTCGGCGTACAGCCAGTCTCTCAACG  400

seq1  AGTCCTGCACACCCTCCACTTGTGTGTATCTGAGTCAGGGCCTCTTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCACACCCTCCACTTGTGTGTATCTGAGTCAGGGCCTCTTGTCT  450

seq1  TCTTGAAGGCCTGGATAGCAAATCTGCTTTGAAAAACAGGACTGGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGGCCTGGATAGCAAATCTGCTTTGAAAAACAGGACTGGTGTTT  500

seq1  CTCTGGAGGGTGGTGGGTTTATTTGGGATCCAGGGTACTAAAGACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGGGTGGTGGGTTTATTTGGGATCCAGGGTACTAAAGACAAATG  550

seq1  TCTTTTCCAGCAAATGTCAGGTAAGCGGGACTTGTAGCTCCCAATGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCAGCAAATGTCAGGTAAGCGGGACTTGTAGCTCCCAATGGTCT  600

seq1  CCAAAATCCAGGGCCTCCCATCTGGGATGTGAGGGAGTGTGGTGGCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCCAGGGCCTCCCATCTGGGATGTGAGGGAGTGTGGTGGCCATC  650

seq1  TAGGCTCACCAAGGTCACCCATGAAGGAC-TTTTCTTTTTCTTTCTTTC-  698
      |||||||| |||||||||||||||||||| ||||||||||||||||||| 
seq2  TAGGCTCATCAAGGTCACCCATGAAGGACTTTTTCTTTTTCTTTCTTTCT  700

seq1  TTTCTTTTTTATTTAAAGAATCA-TTTATTTTATGTATGTGAGTACACAG  747
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTCTTTTTTATTTAAAGAATCATTTTATTTTATGTATGTGAGTACACAG  750

seq1  TAGC-TGTTTTCAGACACAC-TGGAAGAGGGCATC-TGATCCCATTACAG  794
      |||| ||||||| ||||||| ||||||||||| || ||||||||||||||
seq2  TAGCTTGTTTTCTGACACACTTGGAAGAGGGCTTCTTGATCCCATTACAG  800

seq1  ATGGTTGTGAGTCACCCTGTGGTTGC-TGGGAA-TTGAACTCAGGACC-T  841
      |||| ||||||||||||||||||||| |||||| |||||||||||||| |
seq2  ATGG-TGTGAGTCACCCTGTGGTTGCTTGGGAATTTGAACTCAGGACCTT  849

seq1  CTGGAAGAACAGCC  855
      ||||||| ||||||
seq2  CTGGAAG-ACAGCC  862