BAC Information

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BAC

Clone NameB6Ng01-152M11
Chromosome5 (Build37)
Map Location 54,681,005 - 54,801,523
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152M11.bB6Ng01-152M11.g
ACCDH948269DH948270
length1,150893
definitionDH948269|Mus musculus domesticus DNA, BAC clone: B6Ng01-152M11, 5' end.DH948270|Mus musculus domesticus DNA, BAC clone: B6Ng01-152M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,800,360 - 54,801,523)(54,681,005 - 54,681,897)
sequence
gaattcaacaccttactgtcggtccagatttgtcatactagatagcatca
aaagaaggataagaaattattcatgaaacaacagaaagtcttgggtccgc
ctccattaggtcatggtagggaatctggaaattgcctttgtggcattttt
gtgcgtgtttccttgtgtaaattgtgcttcttttcgtagtgacagagata
atatattttcactgtagaaaatcccaaaacataatgaagcacacaggaga
aaagaaaagtcatccacaagttgacaaaccgcagatgcccatgtccttcc
aaggacttctaatgttttatttgttatgttccatactttggattatattt
ttcttaatgttttataattttctttttgtttcaagtaaaagtctaatctt
ttgcaagttattaaatatcttcatcatgttctttaatagatattgtctca
tgtgcatatatgtaataaaatcaattatcctaccctggataagctctgtg
gttagctttaattgtcaccttgacagagctgagaagaaagagtaaatgag
agattttctatgttagcctacagtcagatttgtgtaacattttgttaatg
atattaattgatatgggaagacatagcccactgtgaaggtagccattccc
taggcaaggagtccagagcttcacaagagtggagaaataaagctgagcac
aagaaatcaagcaaagagtaagcaaaatgcatgcacttatttctctctgc
ccttgcctatgatggatcaagctcctgttgttgtgactttcccacaatga
ttgagaacaagttggaattgtaagctcggagaaacccctacttctggaag
ttgtattttgtcaacatgtctttactatagccacagaaatgaaactcagg
acagacacttgggctattcacagcactatacattcacataatgatgtaga
aagctttgcctgcactaggaccagacaggagaaatacaaaaagtaccctg
gaaggaggaaagtatttataggacttttccaaagcatgaagcctacacga
tagtcctcaaactggcgagacaatcttaaagcatttcctctacatttcta
ccttcagaccattttgaacctagcctgccaccctcctttggcattaaaaa

gaattcttggtagctcttttatctacaaacacagataaatctaattgttt
tttgaaaatagagtgggttggaatttgtacagttaagtagatattattat
tattattattattatatgactggagttcttttttaagcaattcacctcaa
ccactggtaataggtaacacgcgcttgtttggggtgtgtgtgaatatttg
tgtgtttccatacttagagccaatcctgggtcatcagaaatgctctatgg
gtacaagagaaaataagaaggttaatttgaccactgaaagagaaaggaat
tggagaataagatatctagtattcataattataacttatgatggctaaac
atagaccttgcattttgacttatgcgttagcattagtaataaggggggca
tcttttattttatttttttctgagaggagaaaactgaacaaactctcttt
ctattagaaactttaatcttaaacctgaaggattctggaaatgtcacctt
cctgcctgaggcttcttttgaactaggtaaaaatagttctagaaattcat
gggtcaatgcgaaatttacatcatggtctaaagatacgaagtgaccggtt
gggcacccacgatttcatgcaaaccctgaatttttgtcatctgtgatggt
gacatttttcaagtgacattcctgtaaatactgaataataatatgtccca
gacagagcccccgggggacaggagaagagaatgagagcggagcagaatta
aaactgacaagaactggagacagcacgaaagataaatcgcgagctgggct
ccgtcaggcaagtctggctgcaagatgttttagatgatagggtgattgat
gggtttagctcagagaaagtccgggaattgtaagagcatatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54800360_54801523
seq2: B6Ng01-152M11.b_45_1194 (reverse)

seq1  TTTTTAATGCTCCAAAAGAAGGGTGGCAGGGCTTAGGGTCAAAAACTGGT  50
      |||||||||   | |||| |||||||||||   |||| ||||||  ||||
seq2  TTTTTAATG---CCAAAGGAGGGTGGCAGG--CTAGGTTCAAAA--TGGT  43

seq1  CTGAGGTTAGGAAAATGTAGAGAGAAATGCTTTTAAGATTGTCTTGGCCA  100
      |||| | |||  |||||||||| ||||||| |||||||||||| | ||||
seq2  CTGAAGGTAG--AAATGTAGAG-GAAATGC-TTTAAGATTGTC-TCGCCA  88

seq1  GTTTTGAGGACTATCGTGTAGGCTTTCATGACTTATGAAAAGTACTATTA  150
      | ||||||||||||||||||||| |||||| |||  ||||||| ||| ||
seq2  G-TTTGAGGACTATCGTGTAGGC-TTCATG-CTTTGGAAAAGTCCTA-TA  134

seq1  AATACTTTCTTCC-TCCAGGTAACTTTTTGTATTCTTCCTGTCTGGTCCT  199
      ||||||||| ||| ||||||  ||||||||||||  ||||||||||||||
seq2  AATACTTTCCTCCTTCCAGGGTACTTTTTGTATTTCTCCTGTCTGGTCCT  184

seq1  AGTGCAGGCAAGGC-TTCTACATCA-TATGTGAATGGTATAGTGCTGTGG  247
      ||||||||||| || |||||||||| ||||||||| ||||||||||||| 
seq2  AGTGCAGGCAAAGCTTTCTACATCATTATGTGAAT-GTATAGTGCTGTGA  233

seq1  ATAGCCCAAGTGTCTGTCCTGAGTTTCATTTCTGTGGCTATAGTAAAGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAAGTGTCTGTCCTGAGTTTCATTTCTGTGGCTATAGTAAAGAC  283

seq1  ATGTTGACAAAATACAACTTCCAGAAGTAGGGGTTTCTCCGAGCTTACAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGACAAAATACAACTTCCAGAAGTAGGGGTTTCTCCGAGCTTACAA  333

seq1  TTCCAACTTGTTCTCAATCATTGTGGGAAAGTCACAACAACAGGAGCTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTTGTTCTCAATCATTGTGGGAAAGTCACAACAACAGGAGCTTG  383

seq1  ATCCATCATAGGCAAGGGCAGAGAGAAATAAGTGCATGCATTTTGCTTAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCATAGGCAAGGGCAGAGAGAAATAAGTGCATGCATTTTGCTTAC  433

seq1  TCTTTGCTTGATTTCTTGTGCTCAGCTTTATTTCTCCACTCTTGTGAAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTGATTTCTTGTGCTCAGCTTTATTTCTCCACTCTTGTGAAGC  483

seq1  TCTGGACTCCTTGCCTAGGGAATGGCTACCTTCACAGTGGGCTATGTCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTCCTTGCCTAGGGAATGGCTACCTTCACAGTGGGCTATGTCTT  533

seq1  CCCATATCAATTAATATCATTAACAAAATGTTACACAAATCTGACTGTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCAATTAATATCATTAACAAAATGTTACACAAATCTGACTGTAG  583

seq1  GCTAACATAGAAAATCTCTCATTTACTCTTTCTTCTCAGCTCTGTCAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATAGAAAATCTCTCATTTACTCTTTCTTCTCAGCTCTGTCAAGG  633

seq1  TGACAATTAAAGCTAACCACAGAGCTTATCCAGGGTAGGATAATTGATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATTAAAGCTAACCACAGAGCTTATCCAGGGTAGGATAATTGATTT  683

seq1  TATTACATATATGCACATGAGACAATATCTATTAAAGAACATGATGAAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATATATGCACATGAGACAATATCTATTAAAGAACATGATGAAGA  733

seq1  TATTTAATAACTTGCAAAAGATTAGACTTTTACTTGAAACAAAAAGAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATAACTTGCAAAAGATTAGACTTTTACTTGAAACAAAAAGAAAA  783

seq1  TTATAAAACATTAAGAAAAATATAATCCAAAGTATGGAACATAACAAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACATTAAGAAAAATATAATCCAAAGTATGGAACATAACAAATA  833

seq1  AAACATTAGAAGTCCTTGGAAGGACATGGGCATCTGCGGTTTGTCAACTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAGAAGTCCTTGGAAGGACATGGGCATCTGCGGTTTGTCAACTT  883

seq1  GTGGATGACTTTTCTTTTCTCCTGTGTGCTTCATTATGTTTTGGGATTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGACTTTTCTTTTCTCCTGTGTGCTTCATTATGTTTTGGGATTTT  933

seq1  CTACAGTGAAAATATATTATCTCTGTCACTACGAAAAGAAGCACAATTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGAAAATATATTATCTCTGTCACTACGAAAAGAAGCACAATTTA  983

seq1  CACAAGGAAACACGCACAAAAATGCCACAAAGGCAATTTCCAGATTCCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGAAACACGCACAAAAATGCCACAAAGGCAATTTCCAGATTCCCT  1033

seq1  ACCATGACCTAATGGAGGCGGACCCAAGACTTTCTGTTGTTTCATGAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACCTAATGGAGGCGGACCCAAGACTTTCTGTTGTTTCATGAATA  1083

seq1  ATTTCTTATCCTTCTTTTGATGCTATCTAGTATGACAAATCTGGACCGAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATCCTTCTTTTGATGCTATCTAGTATGACAAATCTGGACCGAC  1133

seq1  AGTAAGGTGTTGAATTC  1164
      |||||||||||||||||
seq2  AGTAAGGTGTTGAATTC  1150

seq1: chr5_54681005_54681897
seq2: B6Ng01-152M11.g_68_960

seq1  GAATTCTTGGTAGCTCTTTTATCTACAAACACAGATAAATCTAATTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTAGCTCTTTTATCTACAAACACAGATAAATCTAATTGTTT  50

seq1  TTTGAAAATAGAGTGGGTTGGAATTTGTACAGTTAAGTAGATATTATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATAGAGTGGGTTGGAATTTGTACAGTTAAGTAGATATTATTAT  100

seq1  TATTATTATTATTATATGACTGGAGTTCTTTTTTAAGCAATTCACCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATATGACTGGAGTTCTTTTTTAAGCAATTCACCTCAA  150

seq1  CCACTGGTAATAGGTAACACGCGCTTGTTTGGGGTGTGTGTGAATATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTAATAGGTAACACGCGCTTGTTTGGGGTGTGTGTGAATATTTG  200

seq1  TGTGTTTCCATACTTAGAGCCAATCCTGGGTCATCAGAAATGCTCTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCCATACTTAGAGCCAATCCTGGGTCATCAGAAATGCTCTATGG  250

seq1  GTACAAGAGAAAATAAGAAGGTTAATTTGACCACTGAAAGAGAAAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGAGAAAATAAGAAGGTTAATTTGACCACTGAAAGAGAAAGGAAT  300

seq1  TGGAGAATAAGATATCTAGTATTCATAATTATAACTTATGATGGCTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATAAGATATCTAGTATTCATAATTATAACTTATGATGGCTAAAC  350

seq1  ATAGACCTTGCATTTTGACTTATGCGTTAGCATTAGTAATAAGGGGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCTTGCATTTTGACTTATGCGTTAGCATTAGTAATAAGGGGGGCA  400

seq1  TCTTTTATTTTATTTTTTTCTGAGAGGAGAAAACTGAACAAACTCTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTTTATTTTTTTCTGAGAGGAGAAAACTGAACAAACTCTCTTT  450

seq1  CTATTAGAAACTTTAATCTTAAACCTGAAGGATTCTGGAAATGTCACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGAAACTTTAATCTTAAACCTGAAGGATTCTGGAAATGTCACCTT  500

seq1  CCTGCCTGAGGCTTCTTTTGAACTAGGTAAAAATAGTTCTAGAAATTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGAGGCTTCTTTTGAACTAGGTAAAAATAGTTCTAGAAATTCAT  550

seq1  GGGTCAATGCGAAATTTACATCATGGTCTAAAGATACGAAGTGACCGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAATGCGAAATTTACATCATGGTCTAAAGATACGAAGTGACCGGTT  600

seq1  GGGCACCCACGATTTCATGCAAACCCTGAATTTTTGTCATCTGTGATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCCACGATTTCATGCAAACCCTGAATTTTTGTCATCTGTGATGGT  650

seq1  GACATTTTTCAAGTGACATTCCTGTAAATACTGAATAATAATATGTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTCAAGTGACATTCCTGTAAATACTGAATAATAATATGTCCCA  700

seq1  GACAGAGCCCCCGGGGGACAGGAGAAGAGAATGAGAGCGGAGCAGAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCCCCCGGGGGACAGGAGAAGAGAATGAGAGCGGAGCAGAATTA  750

seq1  AAACTGACAAGAACTGGAGACAGCACGAAAGATAAATCGCGAGCTGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACAAGAACTGGAGACAGCACGAAAGATAAATCGCGAGCTGGGCT  800

seq1  CCGTCAGGCAAGTCTGGCTGCAAGATG-TTTAGATGATAGGGTGATTGAT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCGTCAGGCAAGTCTGGCTGCAAGATGTTTTAGATGATAGGGTGATTGAT  850

seq1  GGGTTTAGCTCAGAGGAAATGTCCGGGAA-TGTAAGAGCAGATCA  893
      |||||||||||||||  || ||||||||| |||||||||| ||||
seq2  GGGTTTAGCTCAGAG--AAAGTCCGGGAATTGTAAGAGCATATCA  893