BAC Information

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BAC

Clone NameB6Ng01-152N19
Chromosome5 (Build37)
Map Location 38,217,153 - 38,391,462
singlet/doubletdoublet
Overlap genenone
Upstream geneMan2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
Downstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152N19.bB6Ng01-152N19.g
ACCDH948331DH948332
length1,071777
definitionDH948331|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N19, 5' end.DH948332|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,217,153 - 38,218,230)(38,390,686 - 38,391,462)
sequence
gaattccctggccttttaactgggcgcaataaaaagctgtagattagggg
cgaccagattaaggaaaatgaattactttattacccagacggcgtccggg
gtctggagggaggggttgggctgcggacgccagagagatcggagcctcac
atctgcccacagggcctggagaaataggaaggcctggggcgggttcggga
atactcgcttctgtgaaatgtctggatttcttacgtttctgaggctgtga
ggaggcactgcgtagggcttgggactcaagctcatttaggcccagctgga
cgcccgctgtactgggtcccctgaggtttgttccatgtgtatgggaagta
gaagccataccgtcccgttttaaagccctgcaaacgaaagttaagcgaca
gtgtaggccaaatccttagctcgaagcctagaaggtacggagaactgtag
tttaagaactaattaggcagttgctagatcatctcgttctatagcgtcag
ccgatttacactctgcgctcggattaaaacagaaatggaaataaatctcc
caaatggcttgctttagtctagtgtttttagtacgaggagtgtttttcaa
aaagtgagggttttcagttattccacctcgatccccaacttaaaataatt
tccttttgggagcgatcggagaatccaagtagctacgatctttttcccgg
gaaaaaaagtgcataacggctaaaatacgtgacacgcaactgtgtagaca
acttcagggactcgtgtactggcccagagtcttaattcctgctttaggac
cgagggggcctcgaaccccaagaatggggccccagggcgcaccggggtct
ccagcggaactcacggagtgtgcagcagtcggagcaaagaggcctagcct
caggccggggagggggcggcctgagaagggctgcatcgctaattgcggtg
ataacatctgtcacgatccctcagcgcgccttaataggcagacgagatgt
tgtttagcgccagcggctggctgatcaaagctgcaccggcgcaaggtcct
tgaagtctcgccccttgcctc
gaattctgagttcaaggccagcctggtctacagagtgagttccaggacag
ccagggctacacagagaaaccctgtttcaaaaaaccggggaaaaaaagag
agagagagagacccacattgctaatgtcgtgggcctctttggtgggaccc
agtaagccacttggtaccagctgtgtgtgagagagagaaaaaggcataag
cagtgccttgtagtgctttgcttcaaaataaagggctttgtcaaacctat
ggattttagattactacaggtgtgacattgccttaggaccaagtcattag
cttatttaattttgtcacatctagatcttctcacttgtaaaatggcggta
atgtgactctgctttcagcatgcatatacaattcctgtgagactctctag
aaagtgtgactggtatcaagggagtattgggtggatttgcatattaatat
aaaatattcacttcagcccacagctcaggtggccctttgtctggctccct
gcttggtctcctctgttcttcacacatgacagtggctccttcccttccct
gtttgggtttgtatggctggctggctggcctgatgcagagatatctttgg
gctccagcctaggattggataaggctataaacgtggaaagggagaacaga
aggtctatataataagaggctgtgcaccttgccaggctgatgtcagggag
aacttggagacctgatgagcagggatgctgatagggaaagaggaaggagc
agtttgggatggatggggtgtagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_38217153_38218230
seq2: B6Ng01-152N19.b_48_1118

seq1  GAATTCCCTGGCCTTTTAACTGGGCGCAATAAAAAGCTGTAGATTAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGCCTTTTAACTGGGCGCAATAAAAAGCTGTAGATTAGGGG  50

seq1  CGACCAGATTAAGGAAAATGAATTACTTTATTACCCAGACGGCGTCCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCAGATTAAGGAAAATGAATTACTTTATTACCCAGACGGCGTCCGGG  100

seq1  GTCTGGAGGGAGGGGTTGGGCTGCGGACGCCAGAGAGATCGGAGCCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGGGAGGGGTTGGGCTGCGGACGCCAGAGAGATCGGAGCCTCAC  150

seq1  ATCTGCCCACAGGGCCTGGAGAAATAGGAAGGCCTGGGGCGGGTTCGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCCACAGGGCCTGGAGAAATAGGAAGGCCTGGGGCGGGTTCGGGA  200

seq1  ATACTCGCTTCTGTGAAATGTCTGGATTTCTTACGTTTCTGAGGCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCGCTTCTGTGAAATGTCTGGATTTCTTACGTTTCTGAGGCTGTGA  250

seq1  GGAGGCACTGCGTAGGGCTTGGGACTCAAGCTCATTTAGGCCCAGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACTGCGTAGGGCTTGGGACTCAAGCTCATTTAGGCCCAGCTGGA  300

seq1  CGCCCGCTGTACTGGGTCCCCTGAGGTTTGTTCCATGTGTATGGGAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGCTGTACTGGGTCCCCTGAGGTTTGTTCCATGTGTATGGGAAGTA  350

seq1  GAAGCCATACCGTCCCGTTTTAAAGCCCTGCAAACGAAAGTTAAGCGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATACCGTCCCGTTTTAAAGCCCTGCAAACGAAAGTTAAGCGACA  400

seq1  GTGTAGGCCAAATCCTTAGCTCGAAGCCTAGAAGGTACGGAGAACTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGCCAAATCCTTAGCTCGAAGCCTAGAAGGTACGGAGAACTGTAG  450

seq1  TTTAAGAACTAATTAGGCAGTTGCTAGATCATCTCGTTCTATAGCGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAACTAATTAGGCAGTTGCTAGATCATCTCGTTCTATAGCGTCAG  500

seq1  CCGATTTACACTCTGCGCTCGGATTAAAACAGAAATGGAAATAAATCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTTACACTCTGCGCTCGGATTAAAACAGAAATGGAAATAAATCTCC  550

seq1  CAAATGGCTTGCTTTAGTCTAGTGTTTTTAGTACGAGGAGTGTTTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCTTGCTTTAGTCTAGTGTTTTTAGTACGAGGAGTGTTTTTCAA  600

seq1  AAAGTGAGGGTTTTCAGTTATTCCACCTCGATCCCCAACTTAAAATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGGGTTTTCAGTTATTCCACCTCGATCCCCAACTTAAAATAATT  650

seq1  TCCTTTTGGGAGCGATCGGAGAATCCAAGTAGCTACGATCTTTTTCCCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGGGAGCGATCGGAGAATCCAAGTAGCTACGATCTTTTTCCCGG  700

seq1  GAAAAAAAGTGCATAACGGCTAAAATACGTGACACGCAACTGTGTAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGTGCATAACGGCTAAAATACGTGACACGCAACTGTGTAGACA  750

seq1  ACTTCAGGGACTCGTGTACTGGCCCAGAGTCTTAATTCCTGCTTTAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGGGACTCGTGTACTGGCCCAGAGTCTTAATTCCTGCTTTAGGAC  800

seq1  CGAGGGGGCCTCGAACCCCAAGAATGGGGCCCCAGGGCGCACCGGGGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGGGCCTCGAACCCCAAGAATGGGGCCCCAGGGCGCACCGGGGTCT  850

seq1  CCAGCGGAACTCACGGAGTGTGCAGCAGTCGGAGCAAAGAGGCCTAGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGGAACTCACGGAGTGTGCAGCAGTCGGAGCAAAGAGGCCTAGCCT  900

seq1  CAGGCCGGGGAGGGGGCGGCCTGAGAAGGGCTGCATCGCTAATTGCGGGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGGCCGGGGAGGGGGCGGCCTGAGAAGGGCTGCATCGCTAATTGCGGTG  950

seq1  ATAAACAATCTGTCACGATCCCTCAGCGCGCC-TAATAGGCAGACGAGGA  999
      ||||   ||||||||||||||||||||||||| |||||||||||||| ||
seq2  ATAA--CATCTGTCACGATCCCTCAGCGCGCCTTAATAGGCAGACGA-GA  997

seq1  TGTTGTTTTTAGGCGCCAGCGGCGGCCGGATCAAAGGCTGCAGCCGGCGC  1049
      ||||||||    ||||||||||| | | ||||||| |||||| |||||||
seq2  TGTTGTTT---AGCGCCAGCGGCTGGCTGATCAAA-GCTGCA-CCGGCGC  1042

seq1  AGGGGCCCTTGAAGTCGCGCCCC-TGCCTC  1078
      |  || |||||||||| |||||| ||||||
seq2  A-AGGTCCTTGAAGTCTCGCCCCTTGCCTC  1071

seq1: chr5_38390686_38391462
seq2: B6Ng01-152N19.g_69_845 (reverse)

seq1  CCATCTACACCCCATCCATCCCAAACTGCTCCTTCCTCTTTCCCTATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTACACCCCATCCATCCCAAACTGCTCCTTCCTCTTTCCCTATCAG  50

seq1  CATCCCTGCTCATCAGGTCTCCAAGTTCTCCCTGACATCAGCCTGGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGCTCATCAGGTCTCCAAGTTCTCCCTGACATCAGCCTGGCAAG  100

seq1  GTGCACAGCCTCTTATTATATAGACCTTCTGTTCTCCCTTTCCACGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGCCTCTTATTATATAGACCTTCTGTTCTCCCTTTCCACGTTTA  150

seq1  TAGCCTTATCCAATCCTAGGCTGGAGCCCAAAGATATCTCTGCATCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTATCCAATCCTAGGCTGGAGCCCAAAGATATCTCTGCATCAGGC  200

seq1  CAGCCAGCCAGCCATACAAACCCAAACAGGGAAGGGAAGGAGCCACTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCCAGCCATACAAACCCAAACAGGGAAGGGAAGGAGCCACTGTC  250

seq1  ATGTGTGAAGAACAGAGGAGACCAAGCAGGGAGCCAGACAAAGGGCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGAAGAACAGAGGAGACCAAGCAGGGAGCCAGACAAAGGGCCACC  300

seq1  TGAGCTGTGGGCTGAAGTGAATATTTTATATTAATATGCAAATCCACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTGGGCTGAAGTGAATATTTTATATTAATATGCAAATCCACCCA  350

seq1  ATACTCCCTTGATACCAGTCACACTTTCTAGAGAGTCTCACAGGAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCTTGATACCAGTCACACTTTCTAGAGAGTCTCACAGGAATTGT  400

seq1  ATATGCATGCTGAAAGCAGAGTCACATTACCGCCATTTTACAAGTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGCTGAAAGCAGAGTCACATTACCGCCATTTTACAAGTGAGAA  450

seq1  GATCTAGATGTGACAAAATTAAATAAGCTAATGACTTGGTCCTAAGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGATGTGACAAAATTAAATAAGCTAATGACTTGGTCCTAAGGCAA  500

seq1  TGTCACACCTGTAGTAATCTAAAATCCATAGGTTTGACAAAGCCCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACCTGTAGTAATCTAAAATCCATAGGTTTGACAAAGCCCTTTAT  550

seq1  TTTGAAGCAAAGCACTACAAGGCACTGCTTATGCCTTTTTCTCTCTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCAAAGCACTACAAGGCACTGCTTATGCCTTTTTCTCTCTCTCA  600

seq1  CACACAGCTGGTACCAAGTGGCTTACTGGGTCCCACCAAAGAGGCCCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCTGGTACCAAGTGGCTTACTGGGTCCCACCAAAGAGGCCCACG  650

seq1  ACATTAGCAATGTGGGTCTCTCTCTCTCTCTTTTTTTCCCCGGTTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCAATGTGGGTCTCTCTCTCTCTCTTTTTTTCCCCGGTTTTTTG  700

seq1  AAACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  750

seq1  ACCAGGCTGGCCTTGAACTCAGAATTC  777
      |||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTTGAACTCAGAATTC  777