BAC Information

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BAC

Clone NameB6Ng01-152O06
Chromosome5 (Build37)
Map Location 54,191,068 - 54,340,852
singlet/doubletdoublet
Overlap geneTbc1d19
Upstream geneZcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar
Downstream geneStim2, EG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152O06.bB6Ng01-152O06.g
ACCDH948353DH948354
length888514
definitionDH948353|Mus musculus domesticus DNA, BAC clone: B6Ng01-152O06, 5' end.DH948354|Mus musculus domesticus DNA, BAC clone: B6Ng01-152O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,339,969 - 54,340,852)(54,191,068 - 54,191,587)
sequence
ggaattcagagtattttttttaattctagaatgatacaatgtctaacagt
gtacttaaagtttctgttatcttctcatcagggtatagaggtaaaaccct
gtaataaaacacactggtattttggttacaacagatatgtaaaaataatt
acttggagataaatattgactctaaataaagtcccattatttcaggtcag
tgtttgctgccacgtgaattttgatgctaaagttgtcccgtaaattggct
ttagagcttttaggatgctgggattgggggtgagggatgtttgagcagtg
tttgaaccttctaggactgtgtagtcttttgtggccatcttcctgaatgc
tggccattctaaacgcttattttactaaccgttttttacatagacagaat
tttatccattcctgaattctataaaaatgagaatttaccttctaaagttt
tcaaaatgtatgagtcaaaagatagaagaatgggatacttcactttataa
caggcctctgtcctggaaatgagtcaccaagggttcttttagagccagcg
tcctggtggtgagggtttggctttgggaacagaaaggtggagctgccctt
ttcctgagtagctgtgaatgctctggaaagcacaccccgaaagtgaagag
ggcacctctgggtcttcaccctctgaggtgtggaactagtacctctgtga
cttagccagctatggcttcttggaagtcaacgaggacctttggtagcagt
tccactgggcaagcgtcctcactctgtaaagctctgaaaactcccagttc
ttagaaaggacttaacaggaagcctcgtcctagtagcagaggaagctgag
gaaggaaggaagatgggcagggctgggggaggggcagc
tctctcttcctatttcctgcctaagtcataggccatcagattcatttttg
acaggtgacacatctatacagacataagatattctctgttcttttctaat
aagagacagaaaaggaccggctccagtgaggtggggaggtgggaaggagc
cagaagtagagagaggagaaaatataatcagaatatattgtatgagaaaa
gaatctattttcaattaaaggaaaaaatgaaaaaagaaattaatagtgta
aaggaagattttagatattcaggaaaaacttacagaaatgtgcaaagata
ttggtgagcttttaggcaatgaatgttctcaaatttcaatagtatcacaa
aaggggagggagctttataaacatcttttttgtcttagcgttaaatgtta
atttgacacagcctggaatcaactgagaagggaatttcaatgtaggaatt
gtccagatcagattggcctgtgagtatgttttgattattaattaaatgtg
tgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54339969_54340852
seq2: B6Ng01-152O06.b_46_933 (reverse)

seq1  GCTGCCCCTCCCCCAGCCCTG-CCATCTTTCCTTCCTTCCTCAGCTTCCT  49
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  GCTGCCCCTCCCCCAGCCCTGCCCATC-TTCCTTCCTTCCTCAGCTTCCT  49

seq1  CTGCTACT-GGGCGAGGCTTCCTGTTAAGTCC-TTCTGAGAACT-GGAGT  96
      |||||||| || |||||||||||||||||||| |||| |||||| |||||
seq2  CTGCTACTAGGACGAGGCTTCCTGTTAAGTCCTTTCTAAGAACTGGGAGT  99

seq1  TTTCAGAGCTTTACAGAGTGAGGACGCTTG-CCAGTGGAACTGCTACCAA  145
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCAGAGCTTTACAGAGTGAGGACGCTTGCCCAGTGGAACTGCTACCAA  149

seq1  AGGTCCTCGTTGACTTCCAAGAAGCCATAGCTGGCTAAGTCACAGAGGTA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCGTTGACTTCCAAGAAGCCATAGCTGGCTAAGTCACAGAGGTA  199

seq1  CTAGTTCCACACCTCAGAGGGTGAAGACCCAGAGGTGCCCTCTTCACTTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCCACACCTCAGAGGGTGAAGACCCAGAGGTGCCCTCTTCACTTT  249

seq1  CGGGGTGTGCTTTCCAGAGCATTCACAGCTACTCAGGAAAAGGGCAGCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTGTGCTTTCCAGAGCATTCACAGCTACTCAGGAAAAGGGCAGCTC  299

seq1  CACCTTTCTGTTCCCAAAGCCAAACCCTCACCACCAGGACGCTGGCTCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCTGTTCCCAAAGCCAAACCCTCACCACCAGGACGCTGGCTCTA  349

seq1  AAAGAACCCTTGGTGACTCATTTCCAGGACAGAGGCCTGTTATAAAGTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCCTTGGTGACTCATTTCCAGGACAGAGGCCTGTTATAAAGTGA  399

seq1  AGTATCCCATTCTTCTATCTTTTGACTCATACATTTTGAAAACTTTAGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCCATTCTTCTATCTTTTGACTCATACATTTTGAAAACTTTAGAA  449

seq1  GGTAAATTCTCATTTTTATAGAATTCAGGAATGGATAAAATTCTGTCTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATTCTCATTTTTATAGAATTCAGGAATGGATAAAATTCTGTCTAT  499

seq1  GTAAAAAACGGTTAGTAAAATAAGCGTTTAGAATGGCCAGCATTCAGGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAACGGTTAGTAAAATAAGCGTTTAGAATGGCCAGCATTCAGGAA  549

seq1  GATGGCCACAAAAGACTACACAGTCCTAGAAGGTTCAAACACTGCTCAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCACAAAAGACTACACAGTCCTAGAAGGTTCAAACACTGCTCAAA  599

seq1  CATCCCTCACCCCCAATCCCAGCATCCTAAAAGCTCTAAAGCCAATTTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCACCCCCAATCCCAGCATCCTAAAAGCTCTAAAGCCAATTTAC  649

seq1  GGGACAACTTTAGCATCAAAATTCACGTGGCAGCAAACACTGACCTGAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAACTTTAGCATCAAAATTCACGTGGCAGCAAACACTGACCTGAAA  699

seq1  TAATGGGACTTTATTTAGAGTCAATATTTATCTCCAAGTAATTATTTTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGACTTTATTTAGAGTCAATATTTATCTCCAAGTAATTATTTTTA  749

seq1  CATATCTGTTGTAACCAAAATACCAGTGTGTTTTATTACAGGGTTTTACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGTTGTAACCAAAATACCAGTGTGTTTTATTACAGGGTTTTACC  799

seq1  TCTATACCCTGATGAGAAGATAACAGAAACTTTAAGTACACTGTTAGACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACCCTGATGAGAAGATAACAGAAACTTTAAGTACACTGTTAGACA  849

seq1  TTGTATCATTCTAGAATTAAAAAAAATACTCTGAATTCC  884
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCATTCTAGAATTAAAAAAAATACTCTGAATTCC  888

seq1: chr5_54191068_54191587
seq2: B6Ng01-152O06.g_69_588

seq1  GAATTCTCTCTCTTCCTATTTCCTGCCTAAGTCATAGGCCATCAGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTTCCTATTTCCTGCCTAAGTCATAGGCCATCAGATTCA  50

seq1  TTTTTGACAGGTGACACATCTATACAGACATAAGATATTCTCTGTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACAGGTGACACATCTATACAGACATAAGATATTCTCTGTTCTTT  100

seq1  TCTAATAAGAGACAGAAAAGGACCGGCTCCAGTGAGGTGGGGAGGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAGAGACAGAAAAGGACCGGCTCCAGTGAGGTGGGGAGGTGGGA  150

seq1  AGGAGCCAGAAGTAGAGAGAGGAGAAAATATAATCAGAATATATTGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGAAGTAGAGAGAGGAGAAAATATAATCAGAATATATTGTATG  200

seq1  AGAAAAGAATCTATTTTCAATTAAAGGAAAAAATGAAAAAAGAAATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATCTATTTTCAATTAAAGGAAAAAATGAAAAAAGAAATTAAT  250

seq1  AGTGTAAAGGAAGATTTTAGATATTCAGGAAAAACTTACAGAAATGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAAGGAAGATTTTAGATATTCAGGAAAAACTTACAGAAATGTGCA  300

seq1  AAGATATTGGTGAGCTTTTAGGCAATGAATGTTCTCAAATTTCAATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTGGTGAGCTTTTAGGCAATGAATGTTCTCAAATTTCAATAGTA  350

seq1  TCACAAAAGGGGAGGGAGCTTTATAAACATCTTTTTTGTCTTAGCGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAGGGGAGGGAGCTTTATAAACATCTTTTTTGTCTTAGCGTTAA  400

seq1  ATGTTAATTTGACACAGCCTGGAATCAACTGAGAAGGGAATTTCAATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTTGACACAGCCTGGAATCAACTGAGAAGGGAATTTCAATGTA  450

seq1  GGAATTGTCCAGATCAGATTGGCCTGTGAGTATGTTTTGATTATTAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTCCAGATCAGATTGGCCTGTGAGTATGTTTTGATTATTAATTA  500

seq1  AATGTGTGTGTGTGTGTGTG  520
      ||||||||||||||||||||
seq2  AATGTGTGTGTGTGTGTGTG  520