BAC Information

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BAC

Clone NameB6Ng01-152P08
Chromosome5 (Build37)
Map Location 5,271,923 - 5,410,767
singlet/doubletdoublet
Overlap genePftk1
Upstream geneFzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152P08.bB6Ng01-152P08.g
ACCDH948403DH948404
length1,213557
definitionDH948403|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P08, 5' end.DH948404|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,271,923 - 5,273,117)(5,410,205 - 5,410,767)
sequence
gaattccatttctggaacaggaaaaaactggcacccattagagacaagag
agtcaccgaagctgtgggccagatggctctcagtatacagcacacacagc
gttatattttgttataatgttaggcgtatatatattatcaggaagactgc
acagtttatatgtaaacacagaggaaacctgaacgtccatgcacttttcg
gtactgggagggataacagtagcacttatcagaagtatctgatcccaaca
cggggaagctggaagcaatcgtcaaagtcttgaaagggttgacttgggag
gcaggaaacctgagttctaatctctgctacttaattatctgtgcagcttg
cgtaactcatcaccatttcacctgtcacggccccaggttcatcttgcagc
cggatccagaacgctcacagaaaaaacatttttcacacaagaaaaacccc
acctcagaaacaagactgaagagagaaccaactccagaaagttgtccttt
tgacctccacagtgagccatggcacatatgtaacctctgccccaacatac
atacatacatgcatgcatacatacatacatgtgtttttgttaaagtttaa
aatactgtaataaaattcagtcactaaatgatttgccaattcctaagacc
tgaagtgaactagaaaggagaaagttgagaaaagacagcagtactctaat
gcagcaagagcccctgatgatcaaggacaaactccgacattcaaatggga
tcctaactctgtgagtgggagaaaaatctctggttctggtcttttagagg
acatgctgatgtgactttggttatccaaagagaagtagactgcgtggagc
aggcagtgctgcttttctttcttccttggtaaggactgctcctacaggat
ccactgcagtctaggaaagcacacatctcgttcgcactagaacaaagaat
cttaccctggaccagtacttaactctgggaatctctccaaggagacattc
aaccgccactgcacccttctttcctggtggtggtgaaagcagggaaaggc
atctctcttggaaccatcacatgccagcatttccaatgcttcagattcta
agctgagagcctgaactctctcagggccgagtacgaattgaaggaacagt
accaaagctgggtatctagaacatacaggttccaggcccccggtctttgg
attctcgctgcct

ttgagcagccatgcatagtacattggagttaaattgaaaaaaaaaaaaag
actcaaagcgattctggatggtcactccatacaacacaacccctgcaccc
aaggctcaagagaaattctggaaaagggactgaaagcttggaagagtgag
aggacaaggcagtatcctgagagagggtatcttctatacatgacagggag
ttgcatctatagaatcttaatagtgtggtcacttaaacaagatctacaca
acgacaatactagttgacatttcatcatggaagggggattttcactagac
cccacatcagaagaagagctatagcaattagtggttgctaagagatagta
aatcaatcttctctaaggataagccccctgatgtgttatccagactcaag
tggccatcagttaatatatacatgtgagcaatgctaaatagacacagcag
gttgtctttctatatacatatgtaagcacacgcacacacacatataacta
agttagataaatcatggaattgtgacagagtgggggttgatggggaaggt
tggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5271923_5273117
seq2: B6Ng01-152P08.b_47_1259

seq1  GAATTCCATTTCTGGAACAGGAAAAAACTGGCACCCATTAGAGACAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTCTGGAACAGGAAAAAACTGGCACCCATTAGAGACAAGAG  50

seq1  AGTCACCGAAGCTGTGGGCCAGATGGCTCTCAGTATACAGCACACACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCGAAGCTGTGGGCCAGATGGCTCTCAGTATACAGCACACACAGC  100

seq1  GTTATATTTTGTTATAATGTTAGGCGTATATATATTATCAGGAAGACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTTGTTATAATGTTAGGCGTATATATATTATCAGGAAGACTGC  150

seq1  ACAGTTTATATGTAAACACAGAGGAAACCTGAACGTCCATGCACTTTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATATGTAAACACAGAGGAAACCTGAACGTCCATGCACTTTTCG  200

seq1  GTACTGGGAGGGATAACAGTAGCACTTATCAGAAGTATCTGATCCCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGAGGGATAACAGTAGCACTTATCAGAAGTATCTGATCCCAACA  250

seq1  CGGGGAAGCTGGAAGCAATCGTCAAAGTCTTGAAAGGGTTGACTTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAAGCTGGAAGCAATCGTCAAAGTCTTGAAAGGGTTGACTTGGGAG  300

seq1  GCAGGAAACCTGAGTTCTAATCTCTGCTACTTAATTATCTGTGCAGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAACCTGAGTTCTAATCTCTGCTACTTAATTATCTGTGCAGCTTG  350

seq1  CGTAACTCATCACCATTTCACCTGTCACGGCCCCAGGTTCATCTTGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACTCATCACCATTTCACCTGTCACGGCCCCAGGTTCATCTTGCAGC  400

seq1  CGGATCCAGAACGCTCACAGAAAAAACATTTTTCACACAAGAAAAACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCCAGAACGCTCACAGAAAAAACATTTTTCACACAAGAAAAACCCC  450

seq1  ACCTCAGAAACAAGACTGAAGAGAGAACCAACTCCAGAAAGTTGTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAAACAAGACTGAAGAGAGAACCAACTCCAGAAAGTTGTCCTTT  500

seq1  TGACCTCCACAGTGAGCCATGGCACATATGTAACCTCTGCCCCAACATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCCACAGTGAGCCATGGCACATATGTAACCTCTGCCCCAACATAC  550

seq1  ATACATACATGCATGCATACATACATACATGTGTTTTTGTTAAAGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATGCATGCATACATACATACATGTGTTTTTGTTAAAGTTTAA  600

seq1  AATACTGTAATAAAATTCAGTCACTAAATGATTTGCCAATTCCTAAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTAATAAAATTCAGTCACTAAATGATTTGCCAATTCCTAAGACC  650

seq1  TGAAGTGAACTAGAAAGGAGAAAGTTGAGAAAAGACAGCAGTACTCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGAACTAGAAAGGAGAAAGTTGAGAAAAGACAGCAGTACTCTAAT  700

seq1  GCAGCAAGAGCCCCTGATGATCAAGGACAAACTCCGACATTCAAATGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGAGCCCCTGATGATCAAGGACAAACTCCGACATTCAAATGGGA  750

seq1  TCCTAACTCTGTGAGT-GGAGAAAAATCTCTGGTTCTGGTCTTTTAGAGG  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTAACTCTGTGAGTGGGAGAAAAATCTCTGGTTCTGGTCTTTTAGAGG  800

seq1  ACATGCTGATGTGACTTTGGTTATCCAAAGAGAAGTAGACTGCGTGGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGATGTGACTTTGGTTATCCAAAGAGAAGTAGACTGCGTGGAGC  850

seq1  AGGCAGTGCTGC-TTTCCTTCTTCCTTGGTAAGGACTGCT-CTACAGGAT  897
      |||||||||||| |||| |||||||||||||||||||||| |||||||||
seq2  AGGCAGTGCTGCTTTTCTTTCTTCCTTGGTAAGGACTGCTCCTACAGGAT  900

seq1  CCACTGCAGTCTAGGAAAGCACACATCTCGTTCGGCACTAG-ACAAAGAA  946
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  CCACTGCAGTCTAGGAAAGCACACATCTCGTTC-GCACTAGAACAAAGAA  949

seq1  TC-TACCCTGGACCAGTACTT-ACGCTGGGA--CCCTCCAAGGAG-CATT  991
      || |||||||||||||||||| || ||||||  | |||||||||| ||||
seq2  TCTTACCCTGGACCAGTACTTAACTCTGGGAATCTCTCCAAGGAGACATT  999

seq1  CAACCG-CACTGCAACCCTC-TACCTGGTGGTGGTG-AAGCAGGG-AAGG  1037
      |||||| ||||||| || || | ||||||||||||| |||||||| ||||
seq2  CAACCGCCACTGCACCCTTCTTTCCTGGTGGTGGTGAAAGCAGGGAAAGG  1049

seq1  CA--TCTCTTGGAAACATCCACA-GGCAGCATTTCCAACTGCTTCAAGGA  1084
      ||  |||||||||| ||| |||| | |||||||||||| |||||| ||  
seq2  CATCTCTCTTGGAACCAT-CACATGCCAGCATTTCCAA-TGCTTC-AGAT  1096

seq1  TCTAAGCAGAGAGCCTGA---CTCTCAGGGGCGAGGACAGAAATG-AGGG  1130
      ||||||| ||||||||||   ||||||||| |||| || ||| || ||| 
seq2  TCTAAGCTGAGAGCCTGAACTCTCTCAGGGCCGAGTAC-GAATTGAAGGA  1145

seq1  ACAGTGACAGAGCTGGTGACCAGGAACAT-CAGG-TCCAG--CCCCAGTC  1176
      |||||  || ||||||  | |  |||||| |||| |||||  |||| |||
seq2  ACAGTACCAAAGCTGGGTATCTAGAACATACAGGTTCCAGGCCCCCGGTC  1195

seq1  CTTGGTATTCTCGCTGCCT  1195
       |||| |||||||||||||
seq2  TTTGG-ATTCTCGCTGCCT  1213


seq1: chr5_5410205_5410767
seq2: B6Ng01-152P08.g_71_633 (reverse)

seq1  TCCTCCAACCTTCCCCATCAACCCCCACTCTGTCACAATTCCATGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAACCTTCCCCATCAACCCCCACTCTGTCACAATTCCATGATTTA  50

seq1  TCTAACTTAGTTATATGTGTGTGTGCGTGTGCTTACATATGTATATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTAGTTATATGTGTGTGTGCGTGTGCTTACATATGTATATAGAA  100

seq1  AGACAACCTGCTGTGTCTATTTAGCATTGCTCACATGTATATATTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACCTGCTGTGTCTATTTAGCATTGCTCACATGTATATATTAACTG  150

seq1  ATGGCCACTTGAGTCTGGATAACACATCAGGGGGCTTATCCTTAGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACTTGAGTCTGGATAACACATCAGGGGGCTTATCCTTAGAGAAG  200

seq1  ATTGATTTACTATCTCTTAGCAACCACTAATTGCTATAGCTCTTCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTACTATCTCTTAGCAACCACTAATTGCTATAGCTCTTCTTCTG  250

seq1  ATGTGGGGTCTAGTGAAAATCCCCCTTCCATGATGAAATGTCAACTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGTCTAGTGAAAATCCCCCTTCCATGATGAAATGTCAACTAGTA  300

seq1  TTGTCGTTGTGTAGATCTTGTTTAAGTGACCACACTATTAAGATTCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGTTGTGTAGATCTTGTTTAAGTGACCACACTATTAAGATTCTATA  350

seq1  GATGCAACTCCCTGTCATGTATAGAAGATACCCTCTCTCAGGATACTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAACTCCCTGTCATGTATAGAAGATACCCTCTCTCAGGATACTGCC  400

seq1  TTGTCCTCTCACTCTTCCAAGCTTTCAGTCCCTTTTCCAGAATTTCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCTCACTCTTCCAAGCTTTCAGTCCCTTTTCCAGAATTTCTCTT  450

seq1  GAGCCTTGGGTGCAGGGGTTGTGTTGTATGGAGTGACCATCCAGAATCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGGGTGCAGGGGTTGTGTTGTATGGAGTGACCATCCAGAATCGC  500

seq1  TTTGAGTCTTTTTTTTTTTTTCAATTTAACTCCAATGTACTATGCATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCTTTTTTTTTTTTTCAATTTAACTCCAATGTACTATGCATGGC  550

seq1  TGCTCAAGAATTC  563
      |||||||||||||
seq2  TGCTCAAGAATTC  563


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