BAC Information

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BAC

Clone NameB6Ng01-153A15
Chromosome5 (Build37)
Map Location 116,958,272 - 117,120,605
singlet/doubletdoublet
Overlap gene1500001A10Rik, LOC433943, Gm1684
Upstream genePxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153A15.bB6Ng01-153A15.g
ACCDH948463DH948464
length9551,155
definitionDH948463|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A15, 5' end.DH948464|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,119,966 - 117,120,605)(116,958,272 - 116,959,422)
sequence
gaattctagacaacactctccagcagctattgacctcgggaagcgtggag
atggcctgggcatggagatggtctgggtgtttgaacttgttttattctga
atcttttgaacactgtgtgccgacagtccatgacttggaggactgtctta
gctcatgtttctgtcgctgtgtcataccaaagacagcctggagaggaaaa
ggcttatttcattttacagcttgcagtccatcatctatggacatcagggc
aggaacctggagacaggagctgatggagaggccgtggaagatcactgctt
actggcttgctcctcgtggctttcacagcctgctttacacacacacacac
acacacacacacacacacacacacacacacacacacacacactatatata
tatatatatatatatatatatatatatccctggaccacctgagggatggt
ccttcccatatcaaccattaatcaagaaaatgcctcccagacacacccac
agaccaatctgttggaggtggcaatctctcagttgagagtccttcttccc
tgggatgtctagttctctttcaaattgacagaaactttgacagatgtcac
gaaggaaaagaaggacatacttctgccttttgaggcctgatttctgtctc
cctggtcatcagggagtcctgtgatagcagaattgtacaattaagacaag
aaatgcctacgattcagacaggattggaattccccttcccaggagcagac
accccatgaaacatatcccatgtccccctttgtctgtgttgctaagcagc
atgaagctggattgtccatatctatgtaatggcttttatttagcttttct
tgtctactttttaaagtctacctagcctcctctgacggcacttgtttgaa
ccccctcccgatagatgctgcttcctccctcgctgtatgttgtgtagaca
ctcaa
gaattctctggaacactgaacatattttccacttggggtgttgtcttcag
ggtgtctgtatttgggaggtcattagatatatgtgtctcactggattaaa
aaaaaaaaaccctttctgaaagactttgggcaactatgagaaaacaaatg
gagcttacatgggtaacatgtaatttcctctgagttaaaacgttccatct
tggagggaatccttccgggaagttgaaactttttatccatcaaaaaagcc
cagcaggcccatgaagaaaacaattcaaaggcttcaggaagtccctgaaa
ctgaccagactcacgaggcccctcccttcccaagaaaataacaagtaacg
atgactctcagagcagctgagctgccgggatgaggaagagactaaccgac
ctgtctggaagagactcagaccaactaatttacttgcaaaagatactttc
caagctgtcaagctgcctgcaggcagtgcagtgggctccaggtctctggc
tttgatgagctgtcacgcatgctgggatttgggtgatgcagtcatctctg
agtcatatctgttcctgtacgtaacccctcacccatattcctaaagtaac
tcccaaaacctcattggctcaccaactgtacttttgttaatgttttgatc
tgttgtggaatgttcatggctcccaggaataatatcacaaatagtcacta
ggcatgtttcagggccttatgactaaaaacacgttacagactgtgagttg
aggattccatgctgggaggaggagaaatgtgtgcgtggttgatgcgtcat
gccacagcgcgatatcatctaccctggaggcttcctcccagtcctgggga
tgactcccgcaagcctcctgagggaagtgctagccaagcactctgcagca
tgggctcacagcccattccatgctcactgcagtaatctttgcctctgttt
cactggaagctctgataaaaaagacttcgtgggctttgacaaagctgatc
tcagggtgaatgttcccaagattgctccaccttatcttcttgcccggtgt
cccatttcaaggcgcgcgaagaaatacagggtgagtccagtctgaatttc
ttggcacatggaaggttcctgcacgaggattgaatggtaccaacagccta
cattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_117119966_117120605
seq2: B6Ng01-153A15.b_45_684 (reverse)

seq1  TCAGGCCTCAAAAGGCAGAAGTATGTCCTTCTTTTCCTTCGTGACATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTCAAAAGGCAGAAGTATGTCCTTCTTTTCCTTCGTGACATCTG  50

seq1  TCAAAGTTTCTGTCAATTTGAAAGAGAACTAGACATCCCAGGGAAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTCTGTCAATTTGAAAGAGAACTAGACATCCCAGGGAAGAAGG  100

seq1  ACTCTCAACTGAGAGATTGCCACCTCCAACAGATTGGTCTGTGGGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAACTGAGAGATTGCCACCTCCAACAGATTGGTCTGTGGGTGTGT  150

seq1  CTGGGAGGCATTTTCTTGATTAATGGTTGATATGGGAAGGACCATCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGCATTTTCTTGATTAATGGTTGATATGGGAAGGACCATCCCTC  200

seq1  AGGTGGTCCAGGGATATATATATATATATATATATATATATATATATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTCCAGGGATATATATATATATATATATATATATATATATATAGT  250

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GTGTAAAGCAGGCTGTGAAAGCCACGAGGAGCAAGCCAGTAAGCAGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAGCAGGCTGTGAAAGCCACGAGGAGCAAGCCAGTAAGCAGTGAT  350

seq1  CTTCCACGGCCTCTCCATCAGCTCCTGTCTCCAGGTTCCTGCCCTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACGGCCTCTCCATCAGCTCCTGTCTCCAGGTTCCTGCCCTGATGT  400

seq1  CCATAGATGATGGACTGCAAGCTGTAAAATGAAATAAGCCTTTTCCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATGATGGACTGCAAGCTGTAAAATGAAATAAGCCTTTTCCTCTC  450

seq1  CAGGCTGTCTTTGGTATGACACAGCGACAGAAACATGAGCTAAGACAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTCTTTGGTATGACACAGCGACAGAAACATGAGCTAAGACAGTC  500

seq1  CTCCAAGTCATGGACTGTCGGCACACAGTGTTCAAAAGATTCAGAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTCATGGACTGTCGGCACACAGTGTTCAAAAGATTCAGAATAAA  550

seq1  ACAAGTTCAAACACCCAGGCCATCTCCATGCCCAGGCCATCTCCACGCTT  600
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAAGTTCAAACACCCAGACCATCTCCATGCCCAGGCCATCTCCACGCTT  600

seq1  CCCGAGGACAATAGCTGCTGGAGAGTGTTGTCTAGAATTC  640
      ||||||| ||||||||||||||||||||||||||||||||
seq2  CCCGAGGTCAATAGCTGCTGGAGAGTGTTGTCTAGAATTC  640

seq1: chr5_116958272_116959422
seq2: B6Ng01-153A15.g_69_1223

seq1  GAATTCTCTGGAACACTGAACATATTTTCCACTTGGGGTGTTGTCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAACACTGAACATATTTTCCACTTGGGGTGTTGTCTTCAG  50

seq1  GGTGTCTGTATTTGGGAGGTCATTAGATATATGTGTCTCACTGGATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGTATTTGGGAGGTCATTAGATATATGTGTCTCACTGGATTAAA  100

seq1  AAAAAAAAACCCTTTCTGAAAGACTTTGGGCAACTATGAGAAAACAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACCCTTTCTGAAAGACTTTGGGCAACTATGAGAAAACAAATG  150

seq1  GAGCTTACATGGGTAACATGTAATTTCCTCTGAGTTAAAACGTTCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTACATGGGTAACATGTAATTTCCTCTGAGTTAAAACGTTCCATCT  200

seq1  TGGAGGGAATCCTTCCGGGAAGTTGAAACTTTTTATCCATCAAAAAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAATCCTTCCGGGAAGTTGAAACTTTTTATCCATCAAAAAAGCC  250

seq1  CAGCAGGCCCATGAAGAAAACAATTCAAAGGCTTCAGGAAGTCCCTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCCCATGAAGAAAACAATTCAAAGGCTTCAGGAAGTCCCTGAAA  300

seq1  CTGACCAGACTCACGAGGCCCCTCCCTTCCCAAGAAAATAACAAGTAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGACTCACGAGGCCCCTCCCTTCCCAAGAAAATAACAAGTAACG  350

seq1  ATGACTCTCAGAGCAGCTGAGCTGCCGGGATGAGGAAGAGACTAACCGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTCAGAGCAGCTGAGCTGCCGGGATGAGGAAGAGACTAACCGAC  400

seq1  CTGTCTGGAAGAGACTCAGACCAACTAATTTACTTGCAAAAGATACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGAAGAGACTCAGACCAACTAATTTACTTGCAAAAGATACTTTC  450

seq1  CAAGCTGTCAAGCTGCCTGCAGGCAGTGCAGTGGGCTCCAGGTCTCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTCAAGCTGCCTGCAGGCAGTGCAGTGGGCTCCAGGTCTCTGGC  500

seq1  TTTGATGAGCTGTCACGCATGCTGGGATTTGGGTGATGCAGTCATCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAGCTGTCACGCATGCTGGGATTTGGGTGATGCAGTCATCTCTG  550

seq1  AGTCATATCTGTTCCTGTACGTAACCCCTCACCCATATTCCTAAAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATCTGTTCCTGTACGTAACCCCTCACCCATATTCCTAAAGTAAC  600

seq1  TCCCAAAACCTCATTGGCTCACCAACTGTAC-TTTGTTAATGTTTTGATC  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCAAAACCTCATTGGCTCACCAACTGTACTTTTGTTAATGTTTTGATC  650

seq1  TGTTGTGGAATGTTCATGGCTCCCAGGAATAATATCACAAATAGTCACTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGAATGTTCATGGCTCCCAGGAATAATATCACAAATAGTCACTA  700

seq1  GGCATGTTTCAGGGCCTTATGACTAAAAACACGTTACAGACTGTGAGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTTCAGGGCCTTATGACTAAAAACACGTTACAGACTGTGAGTTG  750

seq1  AGGATTCCATGCTTGGAGGAGGAGAAATGTGTGCGTGGTTGATGCGTCAT  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGATTCCATGCTGGGAGGAGGAGAAATGTGTGCGTGGTTGATGCGTCAT  800

seq1  GCCACAGCGCGATATCATCTACCCTGGAGGCTCCCTCCCAGTCCTGGGGA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCACAGCGCGATATCATCTACCCTGGAGGCTTCCTCCCAGTCCTGGGGA  850

seq1  TGACTCCCGCAAGCCTCCTGAGGGAAGTGCTAGCCAAGCACTCTGCAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCGCAAGCCTCCTGAGGGAAGTGCTAGCCAAGCACTCTGCAGCA  900

seq1  TGGGCTCACAGCCCATTCCATGCTCACTGCAGTATCCTTTGCCTCTGTTT  949
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TGGGCTCACAGCCCATTCCATGCTCACTGCAGTAATCTTTGCCTCTGTTT  950

seq1  CACCTGGGAAGCTCTGAT-ACAAAGACCTCGTGGGCTTTGACATAGCTGA  998
      |||   |||||||||||| | |||||| ||||||||||||||| ||||||
seq2  CAC--TGGAAGCTCTGATAAAAAAGACTTCGTGGGCTTTGACAAAGCTGA  998

seq1  ACTCAGGGTG-ATGTTCCCAAGA-TGCTCCA-CTCATC-TCTTGCCCCGT  1044
       ||||||||| |||||||||||| ||||||| || ||| |||||||| ||
seq2  TCTCAGGGTGAATGTTCCCAAGATTGCTCCACCTTATCTTCTTGCCCGGT  1048

seq1  GTTCCCATTCCAGGCGCGCG-AGAGATACAGGGTGAGTCCAGTCTGACTC  1093
      || ||  ||| ||||||||| ||| |||||||||||||||||||||| | 
seq2  GTCCCATTTCAAGGCGCGCGAAGAAATACAGGGTGAGTCCAGTCTGAATT  1098

seq1  TCCTGGCACAGTGGAAGGTT-CTGCAAGAGTA-TGAATGTAAGCAACAGC  1141
      || ||||||| ||||||||| ||||| ||| | ||||||  | |||||||
seq2  TCTTGGCACA-TGGAAGGTTCCTGCACGAGGATTGAATGGTACCAACAGC  1147

seq1  CTAACCATTC  1151
      |||  |||||
seq2  CTA--CATTC  1155