BAC Information

Click to search

BAC

Clone NameB6Ng01-153G23
Chromosome5 (Build37)
Map Location 23,649,346 - 23,813,654
singlet/doubletdoublet
Overlap geneKlhl7, Nupl2, LOC434047, LOC100042244
Upstream geneLhfpl3, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, LOC100042211
Downstream geneKcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153G23.bB6Ng01-153G23.g
ACCDH948749DH948750
length575935
definitionDH948749|Mus musculus domesticus DNA, BAC clone: B6Ng01-153G23, 5' end.DH948750|Mus musculus domesticus DNA, BAC clone: B6Ng01-153G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,813,074 - 23,813,654)(23,649,346 - 23,650,278)
sequence
accagagccaggtctactgtgggcctgaggaggaggctgggttcagttca
gtggctcccatcttctgctgttccagggcctcaaacagtagcatagccaa
tctgagatctttaaaagtattccacccagggctaaatatccctctcctgc
agtggcacagactgtgacttagctatttggtgaaggccagagggactccg
atagtctttgccaatgacaaccccagctggcagctgggaccttcctagca
aggctcccagagcagctgtctgagtccaggcgccttgaggcttctggctc
acgttctgtcaactgacttgtgaacatgaatgttttgggtagctatctgc
atgatttggagatgaaacaagtgcagaaaagctgcaaggctcttgactac
aatgcttagcctgtcgggattagctcaggcctgttggatgaagacacttc
tgtgtgtctttatgccatttgcaacacccacaacagatttatgtgtttga
acatgtggtccccagctggcagcacagctgtgtagcccttaagtagtagg
gtttgagatggagggagggaacagt
gaattctggctgtgtactgtggtcatattgggacattccagaaaccatgt
gaaggaagccatactggcatatggctgggccatactgccataacctgttc
cacttattagagggttcttgtgctctggagtttaaaagagacatctagat
atatacctttaagtaggtatcggtcttctggttctacagtttgttcaaac
agagagtaaatgtttgacaccaggtaaccaaccatatcattagcccatat
ccatggctatatgatcctatatatctaatatgtaggaggagctggggcat
taatctgtcctgcatacaccagcctactatagaccaggggcttagcagac
ttctataaaaagatcagaggaaattagtttcatccttgccgattgttctc
ttcaccaccacagctactcagttgtgttgctgtagaaggtaaatagccat
aaacagtgtataagcaaatgggcatagtttccttctctgcggctggacag
ttacacagtgtagggtagaatggagtgctcagtttcccatctgggcgtct
gcatggccatgactcagaagggaatcagtaaagcaaggaggtttgctctt
aaaattgtgtagtctgtggcaagaaaggctgactaggacccaaggaaggc
aggatgtcatgcttatacatgcatgatgctttcagttgtgtgcgcactcg
tggttgctgtgtgagaacttacatgtgctgtccacaccctttctagtttg
cctgttttctcaacacctaagcacataccttttgcaatgaaatactcatt
aaaaatactgaaatactttttctgggcccatattacctgcctacgtatga
cgttagtgcctttatccatttattgacacctgaaagctacatgttcctct
aactttgagaagactaaaaattaatcctctttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_23813074_23813654
seq2: B6Ng01-153G23.b_44_624 (reverse)

seq1  ACTGTTCCCTCCCTCCATCTCAAACCCTACTACTTAAGGGCTACACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCCTCCCTCCATCTCAAACCCTACTACTTAAGGGCTACACAGCT  50

seq1  GTGCTGCCAGCTGGGGACCACATGTTCAAACACATAAATCTGTTGTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCAGCTGGGGACCACATGTTCAAACACATAAATCTGTTGTGGGT  100

seq1  GTTGCAAATGGCATAAAGACACACAGAAGTGTCTTCATCCAACAGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAATGGCATAAAGACACACAGAAGTGTCTTCATCCAACAGGCCTG  150

seq1  AGCTAATCCCGACAGGCTAAGCATTGTAGTCAAGAGCCTTGCAGCTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATCCCGACAGGCTAAGCATTGTAGTCAAGAGCCTTGCAGCTTTTC  200

seq1  TGCACTTGTTTCATCTCCAAATCATGCAGATAGCTACCCAAAACATTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGTTTCATCTCCAAATCATGCAGATAGCTACCCAAAACATTCAT  250

seq1  GTTCACAAGTCAGTTGACAGAACGTGAGCCAGAAGCCTCAAGGCGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAAGTCAGTTGACAGAACGTGAGCCAGAAGCCTCAAGGCGCCTGG  300

seq1  ACTCAGACAGCTGCTCTGGGAGCCTTGCTAGGAAGGTCCCAGCTGCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACAGCTGCTCTGGGAGCCTTGCTAGGAAGGTCCCAGCTGCCAGC  350

seq1  TGGGGTTGTCATTGGCAAAGACTATCGGAGTCCCTCTGGCCTTCACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGTCATTGGCAAAGACTATCGGAGTCCCTCTGGCCTTCACCAAA  400

seq1  TAGCTAAGTCACAGTCTGTGCCACTGCAGGAGAGGGATATTTAGCCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGTCACAGTCTGTGCCACTGCAGGAGAGGGATATTTAGCCCTGG  450

seq1  GTGGAATACTTTTAAAGATCTCAGATTGGCTATGCTACTGTTTGAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATACTTTTAAAGATCTCAGATTGGCTATGCTACTGTTTGAGGCCC  500

seq1  TGGAACAGCAGAAGATGGGAGCCACTGAACTGAACCCAGCCTCCTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGCAGAAGATGGGAGCCACTGAACTGAACCCAGCCTCCTCCTCA  550

seq1  GGCCCACAGTAGACCTGGCTCTGGTGAATTC  581
      |||||||||||||||||||||||||||||||
seq2  GGCCCACAGTAGACCTGGCTCTGGTGAATTC  581

seq1: chr5_23649346_23650278
seq2: B6Ng01-153G23.g_69_1003

seq1  GAATTCTGGCTGTGTACTGTGGTCATATTGGGACATTCCAGAAACCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTGTGTACTGTGGTCATATTGGGACATTCCAGAAACCATGT  50

seq1  GAAGGAAGCCATACTGGCATATGGCTGGGCCATACTGCCATAACCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGCCATACTGGCATATGGCTGGGCCATACTGCCATAACCTGTTC  100

seq1  CACTTATTAGAGGGTTCTTGTGCTCTGGAGTTTAAAAGAGACATCTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTAGAGGGTTCTTGTGCTCTGGAGTTTAAAAGAGACATCTAGAT  150

seq1  ATATACCTTTAAGTAGGTATCGGTCTTCTGGTTCTACAGTTTGTTCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCTTTAAGTAGGTATCGGTCTTCTGGTTCTACAGTTTGTTCAAAC  200

seq1  AGAGAGTAAATGTTTGACACCAGGTAACCAACCATATCATTAGCCCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTAAATGTTTGACACCAGGTAACCAACCATATCATTAGCCCATAT  250

seq1  CCATGGCTATATGATCCTATATATCTAATATGTAGGAGGAGCTGGGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTATATGATCCTATATATCTAATATGTAGGAGGAGCTGGGGCAT  300

seq1  TAATCTGTCCTGCATACACCAGCCTACTATAGACCAGGGGCTTAGCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGTCCTGCATACACCAGCCTACTATAGACCAGGGGCTTAGCAGAC  350

seq1  TTCTATAAAAAGATCAGAGGAAATTAGTTTCATCCTTGCCGATTGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAAAAGATCAGAGGAAATTAGTTTCATCCTTGCCGATTGTTCTC  400

seq1  TTCACCACCACAGCTACTCAGTTGTGTTGCTGTAGAAGGTAAATAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACCACAGCTACTCAGTTGTGTTGCTGTAGAAGGTAAATAGCCAT  450

seq1  AAACAGTGTATAAGCAAATGGGCATAGTTTCCTTCTCTGCGGCTGGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGTATAAGCAAATGGGCATAGTTTCCTTCTCTGCGGCTGGACAG  500

seq1  TTACACAGTGTAGGGTAGAATGGAGTGCTCAGTTTCCCATCTGGGCGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGTGTAGGGTAGAATGGAGTGCTCAGTTTCCCATCTGGGCGTCT  550

seq1  GCATGGCCATGACTCAGAAGGGAATCAGTAAAGCAAGGAGGTTTGCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCATGACTCAGAAGGGAATCAGTAAAGCAAGGAGGTTTGCTCTT  600

seq1  AAAATTGTGTAGTCTGTGGCAAGAAAGGCTGACTAGGA-CCAAGGAAGGC  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAATTGTGTAGTCTGTGGCAAGAAAGGCTGACTAGGACCCAAGGAAGGC  650

seq1  AGGATGTCATGCTTATACATGCATGATGC-TTCAGTTGTGTGCACACTCG  698
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  AGGATGTCATGCTTATACATGCATGATGCTTTCAGTTGTGTGCGCACTCG  700

seq1  TGGTTGCTGTGTGAGAACTTACATGTGCTGTCCACACCCTTTCTAGTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGTGTGAGAACTTACATGTGCTGTCCACACCCTTTCTAGTTTG  750

seq1  CCTGTTTTCTCAGCACCTAAGCACATACC-TTTGCAATGAAATACTCATT  797
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  CCTGTTTTCTCAACACCTAAGCACATACCTTTTGCAATGAAATACTCATT  800

seq1  AAAAATACTGAAATAC-TTTTCTGGGCCCATAGTTACCTGCCTACGTATG  846
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  AAAAATACTGAAATACTTTTTCTGGGCCCATA-TTACCTGCCTACGTATG  849

seq1  ACGTTAGTGCCTTTATCCATTTTATTGACTACATGAAAGCTACATGTTCC  896
      ||||||||||||||||||| ||||||||| || |||||||||||||||||
seq2  ACGTTAGTGCCTTTATCCA-TTTATTGAC-ACCTGAAAGCTACATGTTCC  897

seq1  TCTAACTTTGAGAGAACTAAAAA-TAATCCTCCTTCCC  933
      |||||||||||||  |||||||| |||||||| |||||
seq2  TCTAACTTTGAGAAGACTAAAAATTAATCCTCTTTCCC  935