BAC Information

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BAC

Clone NameB6Ng01-153N18
Chromosome5 (Build37)
Map Location 93,503,341 - 93,637,276
singlet/doubletdoublet
Overlap geneSept11, Ccni, LOC100040826, 2010109A12Rik
Upstream geneG3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56
Downstream geneCcng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153N18.bB6Ng01-153N18.g
ACCDH949054DH949055
length8911,054
definitionDH949054|Mus musculus domesticus DNA, BAC clone: B6Ng01-153N18, 5' end.DH949055|Mus musculus domesticus DNA, BAC clone: B6Ng01-153N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,503,341 - 93,504,230)(93,636,205 - 93,637,276)
sequence
gaattctttcatagcatcagaagaattaggatgtgtggccttgctggagg
aaatctgtcactggtagtgggctttgaggttctcaaaagcccacacctgg
cccagtgtttttgtgtgtttgttttatctttcagcctgcagatcagggtg
aagctctcagctccttctccagcagcatgtctgccatgcctgctgccatg
accctgtcatgacgataagagactaaatctctgaaagtgtcagccagctc
ctaactaaatggttccttttataagagttgccttggtagaacactaagga
tgacgaaactcctcatcctgaatggaactggatcaaatatattcctaaaa
tgtggtcccctccaatggtaagccctatgcttctgtagtcttccactatg
cctaatcctgtatcttcctccaagtcctccactatgtttaattctgcgtc
ctcctctagcctatcatattgatgaatcaaccttccatcctgactgaaaa
atttaaaaattaaaatcagtgttcttgaaggattttcaacaatattataa
aataatataagtaagtgctatttttagtatcatcataattctacaaaaat
gttcagttttggaagtaaatagacccccatttatataagcttttctttta
gtttagattctcagatgtgtgtaaattaataagtgtgcatgtgtaaacat
tcatgtacatgcaatttacttcaacaaaatcaaatttaaacccaggagca
atataaaccctgctgtgtaaacagagacagagttctttgcatgcttaaat
tcagttcctttctgactggggtatttgatctgattgggaaagaacgatga
aagaaataccagagggagaagggaggagagagggagggaga
gaattcacacacacacacacatacacacggccactactgctgtgctacac
tcttacccagtcttccttgaagaaatgagaggcagaaacgattccacggt
gtcacaatagttgtgccacgataagttatgcagaaaggccatactcttga
gacttttatccaggaaaaaaaaatgttggtcatattaaaaaaaaaaaaaa
gaacgtgtaacaatacagaaaaagactagatgggggtgggaaatgcaggc
acacgtagaacctacttaaaaccctccagtgcttcctgagccccgctgtg
ccctatagaatcctctctgacctcagctttctgccccttgagtctcagag
gcaatgtaagcttcagtgctttccatatgttgcttcctgtgcctatattt
ttctttgcccagtggtttcaagactcatcttaaatgtcacttcctcagag
aaacctttactgagagcccagagcaggttaaaggcgtttccacactggtc
tgaaattttccatcttaatccttctgctactgacacttgtttatgaggtc
agaaatcaaatactgagagcctttcacatacagaaatgcagtataaaaca
aactatacaagatccaggccatccatgagttcatatggggaggggatggc
tatagagtaaaacagtcttttgggtaatttcatacagtgatcaatgggta
tctctgtgcctgagttgcaaactccttgaagacaggagccttttgttttc
aagctaattccagttctgtaaaaacctgatcgggttttttttttgttttt
gtttttgttttttccagtgatgtaaatgaatgcttgactaggtaaatggt
taagttccaggtctccccttctcccaaagctatctgcattcttttcatag
tagaaccattgtagatttgcaaattaccactggagtaaaagtactcagta
aataaaacacattagttccattcgtaggactagttagtgataacaggacc
ttgaaatactaaacatactggtccatgactagaattcattgggcacagca
aagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93503341_93504230
seq2: B6Ng01-153N18.b_48_938

seq1  GAATTCTTTCATAGCATCAGAAGAATTAGGATGTGTGGCCTTGCTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATAGCATCAGAAGAATTAGGATGTGTGGCCTTGCTGGAGG  50

seq1  AAATCTGTCACTGGTAGTGGGCTTTGAGGTTCTCAAAAGCCCACACCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTCACTGGTAGTGGGCTTTGAGGTTCTCAAAAGCCCACACCTGG  100

seq1  CCCAGTGTTTTTGTGTGTTTGTTTTATCTTTCAGCCTGCAGATCAGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTTTTTGTGTGTTTGTTTTATCTTTCAGCCTGCAGATCAGGGTG  150

seq1  AAGCTCTCAGCTCCTTCTCCAGCAGCATGTCTGCCATGCCTGCTGCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCAGCTCCTTCTCCAGCAGCATGTCTGCCATGCCTGCTGCCATG  200

seq1  ACCCTGTCATGACGATAAGAGACTAAATCTCTGAAAGTGTCAGCCAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCATGACGATAAGAGACTAAATCTCTGAAAGTGTCAGCCAGCTC  250

seq1  CTAACTAAATGGTTCCTTTTATAAGAGTTGCCTTGGTAGAACACTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAAATGGTTCCTTTTATAAGAGTTGCCTTGGTAGAACACTAAGGA  300

seq1  TGACGAAACTCCTCATCCTGAATGGAACTGGATCAAATATATTCCTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGAAACTCCTCATCCTGAATGGAACTGGATCAAATATATTCCTAAAA  350

seq1  TGTGGTCCCCTCCAATGGTAAGCCCTATGCTTCTGTAGTCTTCCACTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCCCTCCAATGGTAAGCCCTATGCTTCTGTAGTCTTCCACTATG  400

seq1  CCTAATCCTGTATCTTCCTCCAAGTCCTCCACTATGTTTAATTCTGCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCTGTATCTTCCTCCAAGTCCTCCACTATGTTTAATTCTGCGTC  450

seq1  CTCCTCTAGCCTATCATATTGATGAATCAACCTTCCATCCTGACTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTAGCCTATCATATTGATGAATCAACCTTCCATCCTGACTGAAAA  500

seq1  ATTTAAAAATTAAAATCAGTGTTCTTGAAGGATTTTCAACAATATTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATTAAAATCAGTGTTCTTGAAGGATTTTCAACAATATTATAA  550

seq1  AATAATATAAGTAAGTGCTATTTTTAGTATCATCATAATTCTACAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATAAGTAAGTGCTATTTTTAGTATCATCATAATTCTACAAAAAT  600

seq1  GTTCAGTTTTGGAAGTAAATAGACCCCCATTTATATAAGCTTTTCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTTTGGAAGTAAATAGACCCCCATTTATATAAGCTTTTCTTTTA  650

seq1  GTTTAGATTCTCAGATGTGTGTAAATTAATAAGTGTGCATGTGTAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATTCTCAGATGTGTGTAAATTAATAAGTGTGCATGTGTAAACAT  700

seq1  TCATGTACATGCAATTTACTTCAACAAAATCAAATTTAAACCCAGGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACATGCAATTTACTTCAACAAAATCAAATTTAAACCCAGGAGCA  750

seq1  ATATAAACCCTGCTGTGTAAACAGAGACAGAGTTCTTTGCATGCTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACCCTGCTGTGTAAACAGAGACAGAGTTCTTTGCATGCTTAAAT  800

seq1  TCAGTTCCTTTCTGACTGGGGTATTTGATCTGATT-GGAAAGAACGATGA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAGTTCCTTTCTGACTGGGGTATTTGATCTGATTGGGAAAGAACGATGA  850

seq1  AAGAAATACCAGAGGGAGAAGGGAGGAGAGAGGGAGGGAGA  890
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATACCAGAGGGAGAAGGGAGGAGAGAGGGAGGGAGA  891

seq1: chr5_93636205_93637276
seq2: B6Ng01-153N18.g_69_1122 (reverse)

seq1  GCTTGGCTGTGCGCCAATGGAATTCTAGTCATGAGCCAGTATGTCTAGTA  50
      |||| ||||||| ||||| ||||||||||||||  ||||||||| |||||
seq2  GCTTTGCTGTGC-CCAAT-GAATTCTAGTCATGGACCAGTATGTTTAGTA  48

seq1  TTTCAGGGTCCTGTTTATCACTAACTAGGTCCTTAACGAATGTGAACTAA  100
      ||||| ||||||| ||||||||||||| |||||  ||||||| ||||| |
seq2  TTTCAAGGTCCTG-TTATCACTAACTA-GTCCT--ACGAATG-GAACT-A  92

seq1  ATGTGTTTTATTTACTTGAGTACTTTTTACTCCAGTTGGTAAATTTTGCA  150
      ||||||||||||||| ||||||| ||||||||||| ||||||  ||||||
seq2  ATGTGTTTTATTTAC-TGAGTAC-TTTTACTCCAG-TGGTAA--TTTGCA  137

seq1  AATCTTACAATGGTTCTACTTATGAAAAGAATGCAGATAGCTTTGGGAAG  200
      |||| |||||||||||||| ||||||||||||||||||||||||||| ||
seq2  AATC-TACAATGGTTCTAC-TATGAAAAGAATGCAGATAGCTTTGGG-AG  184

seq1  AAGGGGAGACCTGGAACTTAACCATTTACCTAGTCAAGCATTCATTTTAC  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGGGGAGACCTGGAACTTAACCATTTACCTAGTCAAGCATTCA-TTTAC  233

seq1  ATCACTGGAAAAAAACAAAAACAAAAACAAAAAAAAAACCCGATCAGGTT  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGG-AAAAAACAAAAACAAAAACAAAAAAAAAACCCGATCAGGTT  282

seq1  TTTACAGAACTGGAATTAGCTTGAAAACAAAAGGCTCCTGTCTTCAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAACTGGAATTAGCTTGAAAACAAAAGGCTCCTGTCTTCAAGGA  332

seq1  GTTTGCAACTCAGGCACAGAGATACCCATTGATCACTGTATGAAATTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAACTCAGGCACAGAGATACCCATTGATCACTGTATGAAATTACC  382

seq1  CAAAAGACTGTTTTACTCTATAGCCATCCCCTCCCCATATGAACTCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACTGTTTTACTCTATAGCCATCCCCTCCCCATATGAACTCATGG  432

seq1  ATGGCCTGGATCTTGTATAGTTTGTTTTATACTGCATTTCTGTATGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGGATCTTGTATAGTTTGTTTTATACTGCATTTCTGTATGTGAA  482

seq1  AGGCTCTCAGTATTTGATTTCTGACCTCATAAACAAGTGTCAGTAGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCAGTATTTGATTTCTGACCTCATAAACAAGTGTCAGTAGCAGA  532

seq1  AGGATTAAGATGGAAAATTTCAGACCAGTGTGGAAACGCCTTTAACCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAAGATGGAAAATTTCAGACCAGTGTGGAAACGCCTTTAACCTGC  582

seq1  TCTGGGCTCTCAGTAAAGGTTTCTCTGAGGAAGTGACATTTAAGATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTCTCAGTAAAGGTTTCTCTGAGGAAGTGACATTTAAGATGAGT  632

seq1  CTTGAAACCACTGGGCAAAGAAAAATATAGGCACAGGAAGCAACATATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACCACTGGGCAAAGAAAAATATAGGCACAGGAAGCAACATATGG  682

seq1  AAAGCACTGAAGCTTACATTGCCTCTGAGACTCAAGGGGCAGAAAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTGAAGCTTACATTGCCTCTGAGACTCAAGGGGCAGAAAGCTGA  732

seq1  GGTCAGAGAGGATTCTATAGGGCACAGCGGGGCTCAGGAAGCACTGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGAGGATTCTATAGGGCACAGCGGGGCTCAGGAAGCACTGGAGG  782

seq1  GTTTTAAGTAGGTTCTACGTGTGCCTGCATTTCCCACCCCCATCTAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGTAGGTTCTACGTGTGCCTGCATTTCCCACCCCCATCTAGTCT  832

seq1  TTTTCTGTATTGTTACACGTTCTTTTTTTTTTTTTTAATATGACCAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTATTGTTACACGTTCTTTTTTTTTTTTTTAATATGACCAACAT  882

seq1  TTTTTTTTCCTGGATAAAAGTCTCAAGAGTATGGCCTTTCTGCATAACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTGGATAAAAGTCTCAAGAGTATGGCCTTTCTGCATAACTT  932

seq1  ATCGTGGCACAACTATTGTGACACCGTGGAATCGTTTCTGCCTCTCATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGGCACAACTATTGTGACACCGTGGAATCGTTTCTGCCTCTCATTT  982

seq1  CTTCAAGGAAGACTGGGTAAGAGTGTAGCACAGCAGTAGTGGCCGTGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGAAGACTGGGTAAGAGTGTAGCACAGCAGTAGTGGCCGTGTGT  1032

seq1  ATGTGTGTGTGTGTGTGAATTC  1072
      ||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTGTGAATTC  1054