BAC Information

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BAC

Clone NameB6Ng01-154A22
Chromosome5 (Build37)
Map Location 138,832,015 - 138,832,648
singlet/doubletsinglet
Overlap genenone
Upstream geneZan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1
Downstream gene2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154A22.bB6Ng01-154A22.g
ACCDH949203DH949204
length1,2251,197
definitionDH949203|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A22, 5' end.DH949204|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcgttctgagccccattttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttcgtggtctc
tttgtcttattgacagtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaattttaccctgtgcccatatcttcaaggcttttccccactt
tctcctctataagtttcagtgtctctggttttatgtgaagttccttgatc
cacttagatttgaccttagtacaaggatttaagtatggattgatttgcat
tcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatgc
tgtctttcttccactggatggttttagctcccttgtcgaagatcaagtga
ccataggtgtgggggttcatttctgggtcttcaattctgttccattggtc
tacttgtctgtctctataccagtaccatgcagtttttatcacaattgctc
tgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttta
tccttgagaagaggttttgctatcctaggttttttgttattccagatgaa
tttgcaaatttcttcttctaatttgttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatagccattttt
acaatgttgatcctgccaatccatgagcatgggagatctttccatcttct
gagatcttctttaatttctttcttcagagacttgaagtttttatcataca
gatctttcacttccttagttagagtcatgccaatatatttatattatttg
tgactattgagaaggtgtgtttccctaatttctttctcagcctgtttatt
ctttgtgtagagaaggccattgacttggtttgagtaatttatatcagcta
cttcactgaagctgttttatcaggttagagttctcctggtggaattttta
aggtcacttaaatatactaatcaatcctctgccaaaagggaaattgactt
cctttcattgaattccgtgagttcttgtgtgggaatgcctgggcgataac
actttcaaggacatcatagttgtcg
gaattccatttggacagtctaaaggggaagttttcctgattatttcccta
attatttccttaattgttgattggctaataaagatggcagaagttaatca
ttggtcaaaggtatggcggtgggattttctggacaggacaggaaaagaat
gagagtattagaaatcggatcaggcaagggtagtcgagaagttggagaca
tgtagatttctctgggcactgatagtttgtggcctctggaaaatggggca
ggatagtctttgcccagtctttgagttatctggtcattttgaaatataaa
ggtacctggtttgcagcctgataggaagaacaacaatatgaaccaaccag
taacccccagagctcccaggatctaaaccaccagccatagattacctatt
tactggagcctcagggctccagctgcacatgtaatagaggatggcctagt
tggtcatcaatgggaggagatgccctttgtcctgtaaaggctagtctatg
ctcaagttttggggaatgccagggacaggaagtgggagtgggtgggttgg
tgatcatctgaagaaaggaagagatcaaacctcaaaaagaaaattttttt
ccacaaatatattgaaaatcataataaatagagtaagcattggtccttac
aacactcaatagtcagtgaaaatctaagtgcagaagcaaaaagagagatg
caagacaatagtgttcatagagaaaattaaatcattgtaccttttaatga
tcctctagtatctatcatctcttgccaaaatgacacactccaatagcatg
cataaaatctccagacttttaagtataatcatctatcaatcaatcaatca
ccttttaaatttgtactttgatgggatataactgttttaactgaatgtat
atttaatcatcatgttcatgcctacagcctgaggcgactagaatggtaaa
acagatgcctcaaaacctagatttccagtaattgtaattccccattttgg
tactgggaaaccactcttttgtcctttgcaagacaatcagtgctctttta
ttcactaagacatccctctaaactcctcccctgacctgatagctgccatt
acatatgtaaatgcaattgcatgagctctggaccatggaacctgtgcttt
ttaatcacctgttaccttatttttccagaacaaatagccttaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138832015_138832648
seq2: B6Ng01-154A22.g_618_1260 (reverse)

seq1  CTTCTTTTCATGGCTATTTGTTTTTGAAAAATATAGTAA-AAGTGATTTA  49
      ||||||   | ||||||||||| | ||||||||  |||| | |||| |||
seq2  CTTCTT---AAGGCTATTTGTTCTGGAAAAATAAGGTAACAGGTGA-TTA  46

seq1  AAAAGACAAGGTTCCATTGTCAAGA-CTCATGCCAATGCATTACCCATA-  97
      |||||   ||||||||| ||| ||| ||||||| | ||||||   |||| 
seq2  AAAAGCACAGGTTCCATGGTCCAGAGCTCATGCAATTGCATT-TACATAT  95

seq1  GTAAT-GCAGCTATCAGGTCAGTG--AGAGTCTAGAGGGATGTCTTAGTG  144
      ||||| |||||||||||||||| |   |||| ||||||||||||||||||
seq2  GTAATGGCAGCTATCAGGTCAGGGGAGGAGTTTAGAGGGATGTCTTAGTG  145

seq1  A--TAAAGAGCACTGATTTGTCTTGCAAAGGAC-AAAGAGTGGTTTCCCA  191
      |   |||||||||||| |||||||||||||||| ||||||||||||||||
seq2  AATAAAAGAGCACTGA-TTGTCTTGCAAAGGACAAAAGAGTGGTTTCCCA  194

seq1  GTACCAAAATGGTGAATTACAATTACTGGAAATCTA-GTTTTGAGGCATC  240
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  GTACCAAAATGGGGAATTACAATTACTGGAAATCTAGGTTTTGAGGCATC  244

seq1  TGTTTTACCATTCTAGTCGCCTCAGGCTGTAGGCATGAACATGATGA-TA  289
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTTTTACCATTCTAGTCGCCTCAGGCTGTAGGCATGAACATGATGATTA  294

seq1  AATATACATTCAGTTAAAACAGTTATAT-CCATC-AAGTACAAATTTAAA  337
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  AATATACATTCAGTTAAAACAGTTATATCCCATCAAAGTACAAATTTAAA  344

seq1  AGGTGATTGATTGATTGATAGATGATTATACTT-AAAGTCTGGAGATTTT  386
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGTGATTGATTGATTGATAGATGATTATACTTAAAAGTCTGGAGATTTT  394

seq1  ATGCATGCTATTGGAGTGTGTCATTTTGGCAAGAGATGATAGATACTAGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTATTGGAGTGTGTCATTTTGGCAAGAGATGATAGATACTAGA  444

seq1  GGATCATTAAAAGGTACAATGA-TTAATTTTCTCTATGAACACTATTGTC  485
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGATCATTAAAAGGTACAATGATTTAATTTTCTCTATGAACACTATTGTC  494

seq1  TTGCATCTCTCTTTTTGCTTCTGCACTTAGATTTTCACTGACTATTGAGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTCTCTTTTTGCTTCTGCACTTAGATTTTCACTGACTATTGAGT  544

seq1  GTTGTAAGGACCAATGCTTACTCTATTTATTATGATTTTCAATATATTTG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAGGACCAATGCTTACTCTATTTATTATGATTTTCAATATATTTG  594

seq1  TGGAAAAAAATTTTCTTTTTGAGGTTTGATCTCTTCCTTTCTTCAGATG  634
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAATTTTCTTTTTGAGGTTTGATCTCTTCCTTTCTTCAGATG  643