BAC Information

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BAC

Clone NameB6Ng01-154B08
Chromosome5 (Build37)
Map Location 21,689,476 - 21,807,614
singlet/doubletdoublet
Overlap geneReln
Upstream geneA530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Dnaja1-ps
Downstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B08.bB6Ng01-154B08.g
ACCDH949223DH949224
length1,196154
definitionDH949223|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B08, 5' end.DH949224|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,689,476 - 21,690,702)(21,807,461 - 21,807,614)
sequence
gaattctacacaactctgaatgagtaactaatcttgtacaatcaataacg
tcttctaagataagagagggagcaccgtgttccagcactttctgtgaagc
cagtctcatgcactggagcctgactctacaaggaagatggcagaaagcca
actggggccataatttatccttctgtgtctcctgattgtgggtgcagcgc
gagcagctgacccctgttcctgccacaaaagactgacccctcgaacggtg
agccaagacaaagcctggtttcttaaagctgcgtttggcagccattttgt
catacgacgtgagacgtacactggtaataaaaagtaggtacaatggtagg
taataatacccaaatagacctacatactaagcacagtgtatctcaaaaag
ccgccaagctgacaaacttgaaattctcgtataaatgcaaaggactggga
gaatcagaatgacctgggtgaagcagagaatttgtgaacttgtacttcct
gatttcaaaactgaccatgaagttgcaattaataaatcagtgtgttactg
acgtaaagaaaaacagatcaactgaggctggggtgaaggtataaacatgg
gaaccagggtgagccaagtccccagtacccacataaaaggccgactcggg
cagtacacacacacacacacacacagtctgaaggctggggaggcagagag
aggggagaatcctggggcttgctggccagcaagatttccctacggattga
acttcaacttaagggatggattctgtcttaaaatataaagtagacaggca
cccaccataaactcctcatgtacatatacacatatgctcaggggcataca
aacacatgcacatgacaactgaaaacatatgttcagacaaaaaaatgtat
acacaagtattttgaggagcatcacaaataattggcaaaaagcagaaaca
acttaaatgtctagcaacagaggatggctggatagaatgcgccttatcca
tgaagtgagtctcactcacgcaggagggatgagtactcatgtcatgataa
atgcgaggagcacggacgtatgctgatggagaaagtcagtcacattgtgg
gattctgtttatgtggatctcgagtaggcatgcacgttcaagtgaagtga
ctgctaattacacagcatctggctgcagaaaaattccaagctttaa
tccatgaaagtaaggcacaaacatttattgtggttcagtattgacggttc
aatccatcgtgatatgatgtggaagctacggcagagcagaacagttcatg
tcatgatgtccaggaagtgaagaagaagggaatataggaagaggtgaggg
ggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21689476_21690702
seq2: B6Ng01-154B08.b_45_1240

seq1  GAATTCTACACAACTCTGAATGAGTAACTAATCTTGTACAATCAATAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACAACTCTGAATGAGTAACTAATCTTGTACAATCAATAACG  50

seq1  TCTTCTAAGATAAGAGAGGGAGCACCGTGTTCCAGCACTTTCTGTGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAAGATAAGAGAGGGAGCACCGTGTTCCAGCACTTTCTGTGAAGC  100

seq1  CAGTCTCATGCACTGGAGCCTGACTCTACAAGGAAGATGGCAGAAAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCATGCACTGGAGCCTGACTCTACAAGGAAGATGGCAGAAAGCCA  150

seq1  ACTGGGGCCATAATTTATCCTTCTGTGTCTCCTGATTGTGGGTGCAGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCCATAATTTATCCTTCTGTGTCTCCTGATTGTGGGTGCAGCGC  200

seq1  GAGCAGCTGACCCCTGTTCCTGCCACAAAAGACTGACCCCTCGAACGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTGACCCCTGTTCCTGCCACAAAAGACTGACCCCTCGAACGGTG  250

seq1  AGCCAAGACAAAGCCTGGTTTCTTAAAGCTGCGTTTGGCAGCCATTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGACAAAGCCTGGTTTCTTAAAGCTGCGTTTGGCAGCCATTTTGT  300

seq1  CATACGACGTGAGACGTACACTGGTAATAAAAAGTAGGTACAATGGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGACGTGAGACGTACACTGGTAATAAAAAGTAGGTACAATGGTAGG  350

seq1  TAATAATACCCAAATAGACCTACATACTAAGCACAGTGTATCTCAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATACCCAAATAGACCTACATACTAAGCACAGTGTATCTCAAAAAG  400

seq1  CCGCCAAGCTGACAAACTTGAAATTCTCGTATAAATGCAAAGGACTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCAAGCTGACAAACTTGAAATTCTCGTATAAATGCAAAGGACTGGGA  450

seq1  GAATCAGAATGACCTGGGTGAAGCAGAGAATTTGTGAACTTGTACTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAATGACCTGGGTGAAGCAGAGAATTTGTGAACTTGTACTTCCT  500

seq1  GATTTCAAAACTGACCATGAAGTTGCAATTAATAAATCAGTGTGTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAAACTGACCATGAAGTTGCAATTAATAAATCAGTGTGTTACTG  550

seq1  ACGTAAAGAAAAACAGATCAACTGAGGCTGGGGTGAAGGTATAAACATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAAGAAAAACAGATCAACTGAGGCTGGGGTGAAGGTATAAACATGG  600

seq1  GAACCAGGGTGAGCCAAGTCCCCAGTACCCACATAAAAGGCCGACTCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGGTGAGCCAAGTCCCCAGTACCCACATAAAAGGCCGACTCGGG  650

seq1  CAGTACACACACACACACACACACAGTCTGAAGGCTGGGGAGGCAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACACACACACACACACACACAGTCTGAAGGCTGGGGAGGCAGAGAG  700

seq1  AGGGGAGAATCCTGGGGCTTGCTGGCCAGCAAGATTTCCCTACGGATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAATCCTGGGGCTTGCTGGCCAGCAAGATTTCCCTACGGATTGA  750

seq1  ACTTCAACTTAAGGGATGGATTCTGTCTTAAAATATAAAGTAGACAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACTTAAGGGATGGATTCTGTCTTAAAATATAAAGTAGACAGGCA  800

seq1  CCCACCATAAACTCCTCATGTACATATACACATATGCTCAGGGGCATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATAAACTCCTCATGTACATATACACATATGCTCAGGGGCATACA  850

seq1  AACACATGCACATGACAACTGAAAACATATGTTCAGACAAAAAAAATGTA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACACATGCACATGACAACTGAAAACATATGTTCAGAC-AAAAAAATGTA  899

seq1  TACACAAGTATTTTGAGGAGCATCACAAATAATTGGCAAAAAGCAGAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGTATTTTGAGGAGCATCACAAATAATTGGCAAAAAGCAGAAAC  949

seq1  AACTTAAATGTCTAGCAACAGAGGAATGGCTGGATAGAATGCGGCCTTAT  1000
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AACTTAAATGTCTAGCAACAGAGG-ATGGCTGGATAGAATGC-GCCTTAT  997

seq1  CCATGAAGTGGAGTCTCACTCAACCGCAGGGAGGGATGAAGTACTCAATG  1050
      ||||||||| ||||||||||||  |||| ||||||||| ||||||| |||
seq2  CCATGAAGT-GAGTCTCACTCA--CGCA-GGAGGGATG-AGTACTC-ATG  1041

seq1  TTCATGATAAAATGCCGAGGAAGCACGGACGTATGCTGAATGAGAAAAGT  1100
       ||||||| ||||| ||||| ||||||||||||||||||  ||| |||||
seq2  -TCATGAT-AAATG-CGAGG-AGCACGGACGTATGCTGATGGAG-AAAGT  1086

seq1  CAGTCACATTGTGGGATTCTGTTTATGTGAAATCTCCGGAGTAGGCAAAT  1150
      |||||||||||||||||||||||||||||  |||||  ||||||||  ||
seq2  CAGTCACATTGTGGGATTCTGTTTATGTG-GATCTC--GAGTAGGC--AT  1131

seq1  GCACGTCCAAGTGGAAAGTGACTGCTAATATACACAAGGCATCTTGCTGG  1200
      |||||| ||||||  |||||||||||||| ||||||  |||||| |||| 
seq2  GCACGTTCAAGTG--AAGTGACTGCTAAT-TACACA--GCATCTGGCTG-  1175

seq1  ACAGAAAAAAAAAATCCAAGTTTTTAA  1227
       |||    ||||| |||||| ||| | 
seq2  -CAG----AAAAATTCCAAGCTTTAA-  1196

seq1: chr5_21807461_21807614
seq2: B6Ng01-154B08.g_74_227 (reverse)

seq1  TCCCCCCTCACCTCTTCCTATATTCCCTTCTTCTTCACTTCCTGGACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCACCTCTTCCTATATTCCCTTCTTCTTCACTTCCTGGACATC  50

seq1  ATGACATGAACTGTTCTGCTCTGCCGTAGCTTCCACATCATATCACGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGAACTGTTCTGCTCTGCCGTAGCTTCCACATCATATCACGATG  100

seq1  GATTGAACCGTCAATACTGAACCACAATAAATGTTTGTGCCTTACTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAACCGTCAATACTGAACCACAATAAATGTTTGTGCCTTACTTTCA  150

seq1  TGGA  154
      ||||
seq2  TGGA  154