BAC Information

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BAC

Clone NameB6Ng01-154E01
Chromosome5 (Build37)
Map Location 108,915,179 - 109,061,221
singlet/doubletdoublet
Overlap genePcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175
Upstream gene1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7
Downstream geneDgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154E01.bB6Ng01-154E01.g
ACCDH949346DH949347
length1,1171,123
definitionDH949346|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E01, 5' end.DH949347|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,915,179 - 108,916,300)(109,060,336 - 109,061,221)
sequence
gaattctatcacaaactgggcatggaggtaccaggtgacatcaaggggga
ggcgtgctcagcaaaacagcacttagatccccgaaatggtgagtagttgc
atcaggccaccatacaatccagaggttcatttatcaagctttcccttaca
gaacactttaccttaggtggttttcccagaaagggaccattttctgatgg
ttgctgaaaaggttcttcatcagccctggttaatggacctgttagttaag
agtacaagagagggggctggtgagatggctcagtgggtaagagcacccga
ctgttcttccaaaggtccagagttcaaatcccagcaaccacatggtggct
cacaaccatctgtaacgagatctgacgccctcttctggtgtgtctgaaga
cagctacagtgtacttacatgtaataaataaatctaaaaataaataaata
aaataaaatgggacaatgtatatgttaggctttttttaaaaaaaaaaaaa
aaaaaaaaaaaaagagtacaagagagggggctggagagatggctcagcgg
gtaagagcactgactgctcttccagaggtcctgagttcaattcccagcaa
ccacatggtggctcacaaccatctgtaatggggtctgataccctcttctg
gtgtgtctgaagacagctaccgtgtactcacataaataaagtaaataaat
cttaaaaaaaaaaaaaaagagtacaagagatactagaaaatgtctagggc
tcatgtggaagagaacagaattagacagagggcctaagaaaaaacatggt
ggatagtcttaagataaacatctagctttgtttgctttataataaaaatc
caaatgccagttggatttgagcgtaaagttaattggtgcttttaagtcag
tattttaaaaattattcaaatcttttaagtttggcacctttgctagtgga
accattataagttcctgaagaaatattaagatcacccctgtataatgctt
taacagtctaagaaagtggtgcctagttcccagtggatcagaacagctgg
gtgggagtgttagcagatgaaggggagtatggtttcctgagtatgtttcc
aaagtaaggtccatgag
gaattcattcgtttaactaagttgaattcactgggaaaatgttcacaaca
gcctttggtcatcctttcaatagacatttcccttatttgtgatctcagta
atttttctttttcttactcaatttggccagtgacttctaagttttactga
ctcaaaaaatcagttcttgtttcattgattatttattgtttgttccactg
ctctttggtatttaatcttccttaaattactttgcatttcatttttctga
ttttttaaaagatgaacactaaagtcactaaatgtgatcaatttcctact
aatgacttaatactaccccattattttgaaattctatatttttattttca
gctcgtacaaaactactacctttgatttcttctttgacacataaaaggat
actatccttttccattcagaaacatttttcacactgctaatttctagtta
aattcattgtgatcagataacatgcttgtttcattgcccagatgttctag
gttagtaattctttacacacttggaaaatatgtgtatctgctaattaata
ctaattctgtgcattaataggaattgctctataaatgttcattaattcaa
gatgactgacagggctatttaagtcctctatatactctgtgattttctgg
atacttatcactcattgagaaaacaatctccaactatctcaacttccaat
ttgtctctctccttttgggtctattagcttctcagttaacacactttata
aatttggctttaatcatgtttatagttgatacatcttttttttttgtttt
aaactaaatttttttttgtgtgtatgacttttgcctgcatatacctatgt
gcaccacatgcatacttactgcctacagaagtttaaagagggcgctgaat
cccctggaactggagttataagtggttgtgagccgccatgtggatgctgg
gaattgaaccccagcactctgcagcacagagctcttaaccaccgagccat
ctctcagccctgatgcctctttttatgatttcaccccttcatcattataa
aaaactacctctgggcatatcttttacaccaaagaaatgtgttgtggagg
aaagacacggattcaggttaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108915179_108916300
seq2: B6Ng01-154E01.b_48_1164

seq1  GAATTCTATCACAAACTGGGCATGGAGGTACCAGGTGACATCAAGGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCACAAACTGGGCATGGAGGTACCAGGTGACATCAAGGGGGA  50

seq1  GGCGTGCTCAGCAAAACAGCACTTAGATCCCCGAAATGGTGAGTAGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCTCAGCAAAACAGCACTTAGATCCCCGAAATGGTGAGTAGTTGC  100

seq1  ATCAGGCCACCATACAATCCAGAGGTTCATTTATCAAGCTTTCCCTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCCACCATACAATCCAGAGGTTCATTTATCAAGCTTTCCCTTACA  150

seq1  GAACACTTTACCTTAGGTGGTTTTCCCAGAAAGGGACCATTTTCTGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTTACCTTAGGTGGTTTTCCCAGAAAGGGACCATTTTCTGATGG  200

seq1  TTGCTGAAAAGGTTCTTCATCAGCCCTGGTTAATGGACCTGTTAGTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAAAGGTTCTTCATCAGCCCTGGTTAATGGACCTGTTAGTTAAG  250

seq1  AGTACAAGAGAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGAGAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGA  300

seq1  CTGTTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCT  350

seq1  CACAACCATCTGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCTGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGA  400

seq1  CAGCTACAGTGTACTTACATGTAATAAATAAATCTAAAAATAAATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAGTGTACTTACATGTAATAAATAAATCTAAAAATAAATAAATA  450

seq1  AAATAAAATGGGACAATGTATATGTTAGGCTTTTTTTAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGGGACAATGTATATGTTAGGCTTTTTTTAAAAAAAAAAAAA  500

seq1  AAAAAAAAAAAAAGAGTACAAGAGAGGGGGCTGGAGAGATGGCTCAGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAGTACAAGAGAGGGGGCTGGAGAGATGGCTCAGCGG  550

seq1  GTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAA  600

seq1  CCACATGGTGGCTCACAACCATCTGTAATGGGGTCTGATACCCTCTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGGCTCACAACCATCTGTAATGGGGTCTGATACCCTCTTCTG  650

seq1  GTGTGTCTGAAGACAGCTACCGTGTACTCACATAAATAAAGTAAATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGAAGACAGCTACCGTGTACTCACATAAATAAAGTAAATAAAT  700

seq1  CTTAAAAAAAAAAAAAAAGAGTACAAGAGATACTAGAAAATGTCTAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAAAAAAAAAGAGTACAAGAGATACTAGAAAATGTCTAGGGC  750

seq1  TCATGTGGAAGAGAACAGAATTAGACAGAGGGCCTAAGAAAAAACATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGAAGAGAACAGAATTAGACAGAGGGCCTAAGAAAAAACATGGT  800

seq1  GGATAGTCTTAAGATAAACATCTAGCTTTGTTTGCTTTATAATAAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTCTTAAGATAAACATCTAGCTTTGTTTGCTTTATAATAAAAATC  850

seq1  CAAATGCCAGTTGGATTTGAGCGTAAAGTTAATTGGTGCTTTTAAGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCAGTTGGATTTGAGCGTAAAGTTAATTGGTGCTTTTAAGTCAG  900

seq1  TATTTAATAAATTATTCAAATC-TTTAAGTATTGGCA-CTTTGCTAGTGG  948
      ||||| | |||||||||||||| ||||||| |||||| ||||||||||||
seq2  TATTTTAAAAATTATTCAAATCTTTTAAGT-TTGGCACCTTTGCTAGTGG  949

seq1  AACCA-TATAAGTTCCTG-AGAAATATTAAGATCA-CCCTGTAT-ATGC-  993
      ||||| |||||||||||| |||||||||||||||| |||||||| |||| 
seq2  AACCATTATAAGTTCCTGAAGAAATATTAAGATCACCCCTGTATAATGCT  999

seq1  TTAACAGTCTAAGGAAAGTTGGTGCCTAGTTCCCAGTGGGAACCAGACCA  1043
      |||||||||||| ||||| ||||||||||||||||||||  | |||| ||
seq2  TTAACAGTCTAA-GAAAG-TGGTGCCTAGTTCCCAGTGG--ATCAGAACA  1045

seq1  GGCTGGGTGGGAGTTGGTAAGGCAGATGGAAAGGGGAGTAT-GTGTCCTG  1092
       |||||||||||||  || | |||||||  ||||||||||| || |||||
seq2  -GCTGGGTGGGAGT--GTTA-GCAGATG--AAGGGGAGTATGGTTTCCTG  1089

seq1  AGTATGTGTCCAAAAGTAAGGTTCCATGAG  1122
      ||||||| ||| ||||||||| ||||||||
seq2  AGTATGTTTCC-AAAGTAAGG-TCCATGAG  1117

seq1: chr5_109060336_109061221
seq2: B6Ng01-154E01.g_312_1185 (reverse)

seq1  ATTTAAAACTGAATCCGTGCTCTTCCTCCACCAACACATTCTCTTGTGGT  50
      |||| || |||||||||||   |||||||| ||||||||| |||| ||||
seq2  ATTT-AACCTGAATCCGTGTCTTTCCTCCA-CAACACATT-TCTT-TGGT  46

seq1  AGTAAAAGATATTGCCCAAGAGTAAGTTATTTTATAATGATGAAGGGGTG  100
       |||||||||| ||||| ||||  |||| |||||||||||||||||||||
seq2  -GTAAAAGATA-TGCCC-AGAGGTAGTT-TTTTATAATGATGAAGGGGTG  92

seq1  AAATCATAAAAAGAGTGCATCAGGGCTGAAGAGATGGCTCGGTGGTTTAG  150
      ||||||||||||||| |||||||||||| |||||||||||||||||| ||
seq2  AAATCATAAAAAGAG-GCATCAGGGCTG-AGAGATGGCTCGGTGGTTAAG  140

seq1  AGCTCTTGTGCTTGCAGAGTGCTGGGGTTCAATTCCCAGCATCCACATGG  200
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCTC-TGTGC-TGCAGAGTGCTGGGGTTCAATTCCCAGCATCCACATGG  188

seq1  CGGCTCACAACCACTTATAACTCCAGTTCCAGGGGATTCAGCGCCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCACAACCACTTATAACTCCAGTTCCAGGGGATTCAGCGCCCTCTT  238

seq1  TAAACTTCTGTAGGCAGTAAGTATGCATGTGGTGCACATAGGTATATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCTGTAGGCAGTAAGTATGCATGTGGTGCACATAGGTATATGCA  288

seq1  GGCAAAAGTCATACACACAAAAAAAAATTTAGTTTAAAACAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGTCATACACACAAAAAAAAATTTAGTTTAAAACAAAAAAAAAA  338

seq1  GATGTATCAACTATAAACATGATTAAAGCCAAATTTATAAAGTGTGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATCAACTATAAACATGATTAAAGCCAAATTTATAAAGTGTGTTAA  388

seq1  CTGAGAAGCTAATAGACCCAAAAGGAGAGAGACAAATTGGAAGTTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGCTAATAGACCCAAAAGGAGAGAGACAAATTGGAAGTTGAGAT  438

seq1  AGTTGGAGATTGTTTTCTCAATGAGTGATAAGTATCCAGAAAATCACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGATTGTTTTCTCAATGAGTGATAAGTATCCAGAAAATCACAGA  488

seq1  GTATATAGAGGACTTAAATAGCCCTGTCAGTCATCTTGAATTAATGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAGAGGACTTAAATAGCCCTGTCAGTCATCTTGAATTAATGAACA  538

seq1  TTTATAGAGCAATTCCTATTAATGCACAGAATTAGTATTAATTAGCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAGCAATTCCTATTAATGCACAGAATTAGTATTAATTAGCAGAT  588

seq1  ACACATATTTTCCAAGTGTGTAAAGAATTACTAACCTAGAACATCTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTTTCCAAGTGTGTAAAGAATTACTAACCTAGAACATCTGGGC  638

seq1  AATGAAACAAGCATGTTATCTGATCACAATGAATTTAACTAGAAATTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACAAGCATGTTATCTGATCACAATGAATTTAACTAGAAATTAGC  688

seq1  AGTGTGAAAAATGTTTCTGAATGGAAAAGGATAGTATCCTTTTATGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAAAATGTTTCTGAATGGAAAAGGATAGTATCCTTTTATGTGTC  738

seq1  AAAGAAGAAATCAAAGGTAGTAGTTTTGTACGAGCTGAAAATAAAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAATCAAAGGTAGTAGTTTTGTACGAGCTGAAAATAAAAATAT  788

seq1  AGAATTTCAAAATAATGGGGTAGTATTAAGTCATTAGTAGGAAATTGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCAAAATAATGGGGTAGTATTAAGTCATTAGTAGGAAATTGATC  838

seq1  ACATTTAGTGACTTTAGTGTTCATCTTTTAAAAAAT  886
      ||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGTGACTTTAGTGTTCATCTTTTAAAAAAT  874