BAC Information

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BAC

Clone NameB6Ng01-154E06
Chromosome5 (Build37)
Map Location 15,112,625 - 15,129,924
singlet/doubletdoublet
Overlap geneSpeer4d
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154E06.bB6Ng01-154E06.g
ACCDH949356DH949357
length7191,075
definitionDH949356|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E06, 5' end.DH949357|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,112,625 - 15,113,389)(15,128,859 - 15,129,924)
sequence
gaattcctcttctcagttacaactgggtctttgtcaagttgataagattg
caaaaacatatcgtgcaagtgaaacggaagcagcattgaaagtctgagta
gctggtgggcatcccggcacatgtgcctgtgggtagctgacagatcagct
ggtttaaaagcaaggctggtggtctagtcaatcatggtcgctgttctggt
gctaaaccagattatggagaaagctctattgttgttaagacttgagagga
gcttggtggctgattatgggatggatccccgggtggggtagtctctggat
ggtccatcctttcgtcttagctttgtctctgtaactccttccatgggtat
tttgttccctattctgacactactgcatatgccagcaagattttgctgaa
aggaccttgatatagctgtcttgtgaggctatgccagtatggcaaacaga
agtggatgctcacagtcatttataggatggagcacagggcctccaatgga
caagctagagaaagcacccaaggagctgaagggatctgcaaccctatagg
tggaacaacaatatgaactaaccagtacccccagagcttgtgtctctagc
tgcatatgtagcagaagatggcctagtcagctatcattgggaagagaggc
ccctaggtcttgcatactttatatgccgcagtacagggccaagaaatggg
agtgggtgggtgggggagc
gaattcatgacaccatggatgcagtatggcagtgattacatcatcaagtg
tgtgtccatggggtaagtgacattatccacacacaaaagatcatcattgc
cttgtataccccctaggtggctatggctttactatgtagccctggctgcc
tggaacttacagagatccatctctggctgtgaattctagtctgcagcagg
ggacagaacacctgaataaggaagatggtctcaagagtcactacttgcaa
gtcaatttttattcacaagaaatagaatttttaaaaaataggttttaaaa
gttcaattaatatagagataaaggcaaaaacaaacaatgaaatacaagaa
caagaacatataacttctaaataacataacaataactcaaagaacaaaaa
taaaaacttaaaccaaaactctaaaggaaaattattgttcagctgctttc
gctttctgcacttttagcagcacagccctccagcctgctgctcctcttgg
acactaggtatcagtgcagccgcctcagttctctgccaagagacgttgtc
tgaagagaaaagggaacaacgccctgaatcagccatggcttcctagtaaa
ggcctattcaccctaagaaaatgaattatatggaagaagattcatctgag
gaagattgtgggtgctggagatggtgctcagcaggggcctcctggcctgg
caactcattctgcaggatgctgtcttcttcagctgtggccaatcccagct
ctcttgcagtttctgagacctgggagaggaaggcagttactaagacacag
gagtggaggagacaggcatggcagctgtgaggctactgcctcctaccacc
tcaactgtacttgacagtcaacattatatttttactgaagttattgatgt
aaatctaaagacagggcaaattattcacacagtcacagaaacatggactg
acaaagatcactcagcttctatcagttcaccaaaacatggcaaaggagag
acctcatggattaagggagaaggagaggcacagaccccagatcaatgata
tgaagcactcatttgaatttgtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15112625_15113389
seq2: B6Ng01-154E06.b_1_761

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTCCT  50
                                                ||||||||
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTCCT  50

seq1  CTTCTCAGGTACAACTGGGTCTTTGTCAAGTTGATAA-AATGCAAGAAAC  99
      |||||||| |||||||||||||||||||||||||||| | ||||| ||||
seq2  CTTCTCAGTTACAACTGGGTCTTTGTCAAGTTGATAAGATTGCAA-AAAC  99

seq1  ATATCGTGCAAATGAAACGGAAGCAGCATTGAAAGTCTGAGTAGCCGGTG  149
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  ATATCGTGCAAGTGAAACGGAAGCAGCATTGAAAGTCTGAGTAGCTGGTG  149

seq1  GGCATCCCTGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTGGTTTAA  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCCGGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTGGTTTAA  199

seq1  AAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTAGTGCTAAAC  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTGGTGCTAAAC  249

seq1  CAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAGCTTGGT  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAGCTTGGT  299

seq1  GGCTGATTATGGGATGGATCATCGGGTGGGGTAGTCTCTGGATGGTCCAT  349
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GGCTGATTATGGGATGGATCCCCGGGTGGGGTAGTCTCTGGATGGTCCAT  349

seq1  CCTTTCTTCTTAGCTTTGTCTCCGTAACTCCTTCCATGGCTTTTTTGTTC  399
      |||||| ||||||||||||||| |||||||||||||||| | ||||||||
seq2  CCTTTCGTCTTAGCTTTGTCTCTGTAACTCCTTCCATGGGTATTTTGTTC  399

seq1  CCTATTCTGACACTACTGCATATGCCAGCAAGATTTTGCTGAAAGGACCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTGACACTACTGCATATGCCAGCAAGATTTTGCTGAAAGGACCT  449

seq1  TGATATAGCTGTCTTGTGAGGCTATGCCAGTGCCTGGCAAACACAGAAGT  499
      |||||||||||||||||||||||||||||||   ||||||  ||||||||
seq2  TGATATAGCTGTCTTGTGAGGCTATGCCAGT--ATGGCAA--ACAGAAGT  495

seq1  GGATGCTCACAGTCATCTATAGGATGGAGCACAGGGCCTCCAATGGAGAA  549
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  GGATGCTCACAGTCATTTATAGGATGGAGCACAGGGCCTCCAATGGACAA  545

seq1  GCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTATAAGTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTATAGGTGG  595

seq1  AACAACAATATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCTAGCTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCTAGCTGC  645

seq1  ATATGTAGCAGAAGATGGCCTAGTCAGCCAGCATTGGGAAGAGAGGCCCC  699
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  ATATGTAGCAGAAGATGGCCTAGTCAGCTATCATTGGGAAGAGAGGCCCC  695

seq1  TAGGTCTTGCAAACTTTATATGCCGCAGTACAGGGCCAAGAAATAGGAGT  749
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  TAGGTCTTGCATACTTTATATGCCGCAGTACAGGGCCAAGAAATGGGAGT  745

seq1  GGGTGGGTGGGGGAGC  765
      ||||||||||||||||
seq2  GGGTGGGTGGGGGAGC  761

seq1: chr5_15128859_15129924
seq2: B6Ng01-154E06.g_68_1141 (reverse)

seq1  AGTACAAATGTCAAATGAGTGCTTCTCATTATCATTGATCTGGTGTCCTG  50
      ||||||||| |||||||||||||||    |||||||||||||| || |||
seq2  AGTACAAAT-TCAAATGAGTGCTTC---ATATCATTGATCTGGGGT-CTG  45

seq1  TGCCCTTCTCCTTTCTTCCTGTAATCCACTGAGGTCTCTTCCTTTGCCAT  100
      ||||  ||||| |||| ||| ||||||| ||||||||| |||||||||||
seq2  TGCC--TCTCC-TTCTCCCT-TAATCCA-TGAGGTCTC-TCCTTTGCCAT  89

seq1  GTTTTTGGTTGGAACTGATAGAATCCTGAGTTGATCTTTGTCAGTCCATG  150
      | |||||||  ||||||||||||  ||||| |||||||||||||||||||
seq2  G-TTTTGGT--GAACTGATAGAA-GCTGAG-TGATCTTTGTCAGTCCATG  134

seq1  TTTTTGTGACTGTTGTTGAATATTTTGCCCTGTCTTTAGATTTAACATCA  200
      ||| |||||||||   |||||| |||||||||||||||||||| ||||||
seq2  TTTCTGTGACTGT--GTGAATAATTTGCCCTGTCTTTAGATTT-ACATCA  181

seq1  ATAACTTCAGTTAAAATATTAATGTTGACTGTCAAGTACAGTTGAGGTGG  250
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  ATAACTTCAGTAAAAATA-TAATGTTGACTGTCAAGTACAGTTGAGGTGG  230

seq1  TAGGAGGCAGTAGCCTCACAGCTGCCATGCCTGTCTCCTCCACTCCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGCAGTAGCCTCACAGCTGCCATGCCTGTCTCCTCCACTCCTGTG  280

seq1  TCTTAGTAACTGCCTTCCTCTCCCAGGTCTCAGAAACTGCAAGAGAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTAACTGCCTTCCTCTCCCAGGTCTCAGAAACTGCAAGAGAGCTG  330

seq1  GGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGG  380

seq1  CCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCTACAATCATCCTCGG  450
      ||||||||||||||||||||||||||||||||||| |||||| ||||| |
seq2  CCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCAG  430

seq1  ATGAATCTTCTTCCATATAATTCATTTTCTTAGGGTGAATAGGCCTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTTCTTCCATATAATTCATTTTCTTAGGGTGAATAGGCCTTTAC  480

seq1  TAGGAAGCCATGGCTGATTCAGGGCATTGTTCCCTTTTCTCTTCAGACAA  550
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGGAAGCCATGGCTGATTCAGGGCGTTGTTCCCTTTTCTCTTCAGACAA  530

seq1  CAACTCTTGGCAGAGTACTGAGGTGACTGCACTGCCACCAAGTGTCCAAG  600
      |  |||||||||||| ||||||| | ||||||||  ||| ||||||||||
seq2  CGTCTCTTGGCAGAGAACTGAGGCGGCTGCACTGATACCTAGTGTCCAAG  580

seq1  AGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAA-------  643
      |||||||||||||||||||||||||||||||||||||||||||       
seq2  AGGAGCAGCAGGCTGGAGGGCTGTGCTGCTAAAAGTGCAGAAAGCGAAAG  630

seq1  AAGCTGAACAATAATTTTC-----------TG--------TTTGGTTTTT  674
       ||||||||||||||||||           ||        |||  |||||
seq2  CAGCTGAACAATAATTTTCCTTTAGAGTTTTGGTTTAAGTTTTTATTTTT  680

seq1  GTTCTTTGAG-TGTTGATATGTTATTTAGAAGTTATATGTTCTTGTTCTT  723
      |||||||||| | ||| |||||||||||||||||||||||||||||||||
seq2  GTTCTTTGAGTTATTGTTATGTTATTTAGAAGTTATATGTTCTTGTTCTT  730

seq1  GTATTTCATTGTTTGTTTTTGCCTTCAACTCTATATTAATTGAACTTTTA  773
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  GTATTTCATTGTTTGTTTTTGCCTTTATCTCTATATTAATTGAACTTTTA  780

seq1  AAACC--TTTTTTTAAAATTTTATTTCTTATGAATAAAAATTGATTTGCA  821
      |||||  |||||| |||||| |||||||| |||||||||||||| |||||
seq2  AAACCTATTTTTTAAAAATTCTATTTCTTGTGAATAAAAATTGACTTGCA  830

seq1  AGTAGTGACTCTTGAGACCATCTTCCTTATTCAGGTGTTCTGTCCCCTGC  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGACTCTTGAGACCATCTTCCTTATTCAGGTGTTCTGTCCCCTGC  880

seq1  TGCAGACCTAGAATTCACAGCCAGAGACGGATCTCTGTAAGTTCCAGGCA  921
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCAGA-CTAGAATTCACAGCCAGAGATGGATCTCTGTAAGTTCCAGGCA  929

seq1  GCCAGGGCTACATAGTAAAGCCATAGCCACCTAGGGAGTATACAAGGCAA  971
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCAGGGCTACATAGTAAAGCCATAGCCACCTAGGGGGTATACAAGGCAA  979

seq1  TGATGATCTTTTGTGTGTGGATAATGTCACTTACCCCATGGACACACACT  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATCTTTTGTGTGTGGATAATGTCACTTACCCCATGGACACACACT  1029

seq1  TGATGATGTAATCACTGCCATACTGCATCCATGGTGTCATGAATT  1066
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGTAATCACTGCCATACTGCATCCATGGTGTCATGAATT  1074