BAC Information

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BAC

Clone NameB6Ng01-154F05
Chromosome5 (Build37)
Map Location 21,788,392 - 21,882,946
singlet/doubletdoublet
Overlap geneReln
Upstream geneA530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Dnaja1-ps
Downstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154F05.bB6Ng01-154F05.g
ACCDH949400DH949401
length1,054696
definitionDH949400|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F05, 5' end.DH949401|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,881,892 - 21,882,946)(21,788,392 - 21,789,087)
sequence
gaattctttcagaaataggagtgtaatctcatttactatagctagctctg
ctcactctatgactattgtagtgcttgcttaaattctgttacacacacat
cacccagtatagcattttcttcatgtttctaataatctagagactcaata
tttgtctcttttaaattttgatctctaagtttttgatggtttgcttttct
acagaaggaaaggcaagcacttgaggtcagtagccctcttatcctcgtcc
agagaacagtgctatttgtgatgacagctttataatttctctttcctgat
ctttctgctccattttctggcccacgtctccatctcaagcatttttcact
gagggaaacgaatcctccacagaaagtttttgctgcctcttagggtttgt
taagtgagatgagaagtaacatgattcatcaggtgttgaaatttgctact
tatagtccctgagaaaacatacctacctgctgttcagaattcttacttct
aaagcaattaacacttcacattagaagctgagatgagagcgatgagtgac
acctccacctacagcctcatccatatccataggaatgactactctacaat
tgtaatttcctaccaacccgaccctctacttttgtctgttttccctccca
actactgtttaaatttatacttattaagagagaaatagggcttctagaca
acttttatttttattggttcatagctctaagtttttaatttttacatctt
tatttgaaattataattaattaattctttttccatttttccctctaatcc
ctcccatgtaccctcttactctttcaaagaaattgtgtgtgtgtgtgcac
atgcacatttgcatgtgtatttgtgtgtgtgtgtgtgtgtgtcttgaaaa
aggctgagagtggggagatgtcttccttatgaaagagcactcctcccctt
gctgttggttatcaatgccaggatagtcagccttgacatctgtactggcc
tagtttgggtaacttggaaacccttggggtatcaagagaaggagttcagt
tgag
gaattctggttttgcataaaaggctatagttacgttagtagaattatgtt
tctacaacagtatctgaagaataattatggcctaatttgggctgttctga
tgtgcatttgatattcaagggagtagctggaactttagtgtaattaatac
aattaaaattaactctaagtaggaaaaagactgcctgaatatctatttaa
acccagctatatgctttgccttatttgtcacagctagttaaacatatccc
aggctgatcccaggatacgttggaaatgcaaagcaaaccacactcatcat
tccatcaaaacagtcagagactaatgacaaattatgcattcagtgtaatt
tcttgctcttttgttctgcatcaaagaataaataccatgttactttagcc
tcatcctgccatcatccttcagctactctaaaacagaaattcttttaaat
ttcatattccataaattccctctacttgctcttatgtttgtatatggtca
tttgactactgtctatccactagattagtggaaacagtcattaaaatcac
ccagggcagttcagttgtttttgagaaatgactactaggttcccctgccc
caccctaccccagattctgtttcaccccatatggagtaatcctagaacta
cgcagatgtgttctgtgttttatgtatatgtgtgtgtgtgttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21881892_21882946
seq2: B6Ng01-154F05.b_47_1100 (reverse)

seq1  CTCAACTGAAACTCCTTTCTCTGTGATAACCCCAGGTGTGTCAAGTTGAC  50
      |||||||| |||||| |||||| ||||| ||| |||  |  |||||| ||
seq2  CTCAACTG-AACTCC-TTCTCT-TGATACCCCAAGGGTTTCCAAGTT-AC  46

seq1  ACAAAACTA-GCCAGTACAGATGTCAAGGCTGACTAT-CTGGCATTGGAT  98
       | |||||| ||||||||||||||||||||||||||| |||||||| |||
seq2  -CCAAACTAGGCCAGTACAGATGTCAAGGCTGACTATCCTGGCATT-GAT  94

seq1  AACCAACAGC-AGGGGAGGAGTGCTCTTTCATAAGGAAGACATCT-CCCA  146
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  AACCAACAGCAAGGGGAGGAGTGCTCTTTCATAAGGAAGACATCTCCCCA  144

seq1  CTCTCAGCCTTTTTCAGGACACACACACACACACACACAAATACACATGC  196
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTCAGCCTTTTTCAAGACACACACACACACACACACAAATACACATGC  194

seq1  AAATGTGCATGTGCACACACACACACAATTTCTTTGAAAGAGTAAGAGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCATGTGCACACACACACACAATTTCTTTGAAAGAGTAAGAGGG  244

seq1  TACATGGGAGGGATTAGAGGGAAAAATGGAAAAAGAATTAATTAATTATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGAGGGATTAGAGGGAAAAATGGAAAAAGAATTAATTAATTATA  294

seq1  ATTTCAAATAAAGATGTAAAAATT-AAAACTTAGAGCTATGAACCAATAA  345
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTTCAAATAAAGATGTAAAAATTAAAAACTTAGAGCTATGAACCAATAA  344

seq1  AAATAAAAGTTGTCTAGAAGCCCTATTTCTCTCTTAATAAGTATAAATTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGTTGTCTAGAAGCCCTATTTCTCTCTTAATAAGTATAAATTT  394

seq1  AAACAGTAGTTGGGAGGGAAAACAGACAAAAGTAGAGGGTCGGGTTGGTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAGTTGGGAGGGAAAACAGACAAAAGTAGAGGGTCGGGTTGGTA  444

seq1  GGAAATTACAATTGTAGAGTAGTCATTCCTATGGATATGGATGAGGCTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTACAATTGTAGAGTAGTCATTCCTATGGATATGGATGAGGCTGT  494

seq1  AGGTGGAGGTGTCACTCATCGCTCTCATCTCAGCTTCTAATGTGAAGTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGGTGTCACTCATCGCTCTCATCTCAGCTTCTAATGTGAAGTGT  544

seq1  TAATTGCTTTAGAAGTAAGAATTCTGAACAGCAGGTAGGTATGTTTTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTTTAGAAGTAAGAATTCTGAACAGCAGGTAGGTATGTTTTCTC  594

seq1  AGGGACTATAAGTAGCAAATTTCAACACCTGATGAATCATGTTACTTCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTATAAGTAGCAAATTTCAACACCTGATGAATCATGTTACTTCTC  644

seq1  ATCTCACTTAACAAACCCTAAGAGGCAGCAAAAACTTTCTGTGGAGGATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTTAACAAACCCTAAGAGGCAGCAAAAACTTTCTGTGGAGGATT  694

seq1  CGTTTCCCTCAGTGAAAAATGCTTGAGATGGAGACGTGGGCCAGAAAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCCTCAGTGAAAAATGCTTGAGATGGAGACGTGGGCCAGAAAATG  744

seq1  GAGCAGAAAGATCAGGAAAGAGAAATTATAAAGCTGTCATCACAAATAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAAGATCAGGAAAGAGAAATTATAAAGCTGTCATCACAAATAGC  794

seq1  ACTGTTCTCTGGACGAGGATAAGAGGGCTACTGACCTCAAGTGCTTGCCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTCTGGACGAGGATAAGAGGGCTACTGACCTCAAGTGCTTGCCT  844

seq1  TTCCTTCTGTAGAAAAGCAAACCATCAAAAACTTAGAGATCAAAATTTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGTAGAAAAGCAAACCATCAAAAACTTAGAGATCAAAATTTAA  894

seq1  AAGAGACAAATATTGAGTCTCTAGATTATTAGAAACATGAAGAAAATGCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAAATATTGAGTCTCTAGATTATTAGAAACATGAAGAAAATGCT  944

seq1  ATACTGGGTGATGTGTGTGTAACAGAATTTAAGCAAGCACTACAATAGTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGTGATGTGTGTGTAACAGAATTTAAGCAAGCACTACAATAGTC  994

seq1  ATAGAGTGAGCAGAGCTAGCTATAGTAAATGAGATTACACTCCTATTTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGAGCAGAGCTAGCTATAGTAAATGAGATTACACTCCTATTTCT  1044

seq1  GAAAGAATTC  1055
      ||||||||||
seq2  GAAAGAATTC  1054

seq1: chr5_21788392_21789087
seq2: B6Ng01-154F05.g_64_759

seq1  GAATTCTGGTTTTGCATAAAAGGCTATAGTTACGTTAGTAGAATTATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTTTGCATAAAAGGCTATAGTTACGTTAGTAGAATTATGTT  50

seq1  TCTACAACAGTATCTGAAGAATAATTATGGCCTAATTTGGGCTGTTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACAGTATCTGAAGAATAATTATGGCCTAATTTGGGCTGTTCTGA  100

seq1  TGTGCATTTGATATTCAAGGGAGTAGCTGGAACTTTAGTGTAATTAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTGATATTCAAGGGAGTAGCTGGAACTTTAGTGTAATTAATAC  150

seq1  AATTAAAATTAACTCTAAGTAGGAAAAAGACTGCCTGAATATCTATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTAACTCTAAGTAGGAAAAAGACTGCCTGAATATCTATTTAA  200

seq1  ACCCAGCTATATGCTTTGCCTTATTTGTCACAGCTAGTTAAACATATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTATATGCTTTGCCTTATTTGTCACAGCTAGTTAAACATATCCC  250

seq1  AGGCTGATCCCAGGATACGTTGGAAATGCAAAGCAAACCACACTCATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATCCCAGGATACGTTGGAAATGCAAAGCAAACCACACTCATCAT  300

seq1  TCCATCAAAACAGTCAGAGACTAATGACAAATTATGCATTCAGTGTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAAACAGTCAGAGACTAATGACAAATTATGCATTCAGTGTAATT  350

seq1  TCTTGCTCTTTTGTTCTGCATCAAAGAATAAATACCATGTTACTTTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCTTTTGTTCTGCATCAAAGAATAAATACCATGTTACTTTAGCC  400

seq1  TCATCCTGCCATCATCCTTCAGCTACTCTAAAACAGAAATTCTTTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGCCATCATCCTTCAGCTACTCTAAAACAGAAATTCTTTTAAAT  450

seq1  TTCATATTCCATAAATTCCCTCTACTTGCTCTTATGTTTGTATATGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCCATAAATTCCCTCTACTTGCTCTTATGTTTGTATATGGTCA  500

seq1  TTTGACTACTGTCTATCCACTAGATTAGTGGAAACAGTCATTAAAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTACTGTCTATCCACTAGATTAGTGGAAACAGTCATTAAAATCAC  550

seq1  CCAGGGCAGTTCAGTTGTTTTTGAGAAATGACTACTAGGTTCCCCTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGTTCAGTTGTTTTTGAGAAATGACTACTAGGTTCCCCTGCCC  600

seq1  CACCCTACCCCAGATTCTGTTTCACCCCATATGGAGTAATCCTAGAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACCCCAGATTCTGTTTCACCCCATATGGAGTAATCCTAGAACTA  650

seq1  CGCAGATGTGTTCTGTGTTTTATGTATATGTGTGTGTGTGTTGTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGATGTGTTCTGTGTTTTATGTATATGTGTGTGTGTGTTGTTT  696