BAC Information

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BAC

Clone NameB6Ng01-154F21
Chromosome5 (Build37)
Map Location 51,613,713 - 51,614,739
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154F21.bB6Ng01-154F21.g
ACCDH949432DH949433
length1,1581,023
definitionDH949432|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F21, 5' end.DH949433|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactacttagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactagcatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaca
tagaagtggatgctcacagtcgctattggatggatcacatggccccatga
aggagctagagaaagtaccaaagaagctaaagggatctgcaccctatagg
tggacaacatatgaactacagtacccggagctcttgactctagctgcata
tgcatcaaagatgctagtcgcatcactgaagaaaggtcattgacacgcaa
ccttatatgctcagtacagggaacgccaaggtcataaaaggaattggtgt
gggttata
gaattcctgtaaatctgcatcccaccttaatttataaaataaaggagagc
tgatgactgggcacataaaagggaaggtggatcagaaggtgagggagaga
agaaggagaaaatggaaaagggagaggacatagatgaggaggaaaaagga
gaaaagcagagcagaaacacatggcatggagaaactgcaaattctaaggg
gtctcataagctgtggaaaatggtagtgtagtggtagatctgcccaatct
aggcacacagcatgtaatcctattaactgtgttgtgttttaattgctggg
gcatattgggaggagatttatcacataacatatatatatatatatatata
tatatatatatatatatatatatacatatatatatacatatatataaaat
ttccaaaataattcaatatgatttcatcttaaatgactagttcttcaaaa
tttttcattttaaagagggtcatattcaaaggttcaaagtggatacattt
agaagctcactattgaaccaagtacagtagaaataaaagttccattttgg
gtaacatgtacctgagtcaactcaaatcacatgtccaaacaccagatccc
atgcccccaaacagatatacaaccaatgtcattgccagttttctcaaata
acaagaaaacctttcttgctcaaatttagaaagttgaaattgttcctttc
agtaatttttacccaatgctcatatactacacatcaaaacattttcttga
taatgtctgaaaatgttagctagaatctggctactttttataccccttct
caaatgctcctctatgaggagttactgtttcacatggaccacttcaccag
ccttgcaatgccttgcccaacatctgcccttctccagtttatttaaatac
cagttggtcggatgctgtaacactcctaaagctcagatgtttctctttcc
tttccccaacacctgacttaacctctgctacttcacttctggtcaattat
aattgccatcctccccatattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51613713_51614739
seq2: B6Ng01-154F21.g_65_1087 (reverse)

seq1  AGAATAT-GAGAGGATGGCAATTATAAATTGACCAGAAGTGAGGTAGCAG  49
      ||||||| | ||||||||||||||| |||||||||||||||| |||||||
seq2  AGAATATGGGGAGGATGGCAATTAT-AATTGACCAGAAGTGAAGTAGCAG  49

seq1  AGGTTAAGTCAGGTGTTGGGGAAAAGGAAAGAGAAACATCTGAGCTTTTA  99
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  AGGTTAAGTCAGGTGTTGGGG-AAAGGAAAGAGAAACATCTGAGC-TTTA  97

seq1  GGAGTGTTACAGCATCCGACCAACTGGTATTTAAAATAAAACTGGAGAAG  149
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  GGAGTGTTACAGCATCCGACCAACTGGTATTTAAA--TAAACTGGAGAAG  145

seq1  GGCAGATGTTGGGCAAGGCATTGCAAGGCTGGTGAAGTGGTCCATGTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGTTGGGCAAGGCATTGCAAGGCTGGTGAAGTGGTCCATGTGAA  195

seq1  ACAGTAACTCCTCATAGAGGAGCATTTGAGAAGGGGTATAAAAAGTAGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACTCCTCATAGAGGAGCATTTGAGAAGGGGTATAAAAAGTAGCC  245

seq1  AGATTCTAGCTAACATTTTCAGACATTATCAAGAAAATGTTTTGATGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTAGCTAACATTTTCAGACATTATCAAGAAAATGTTTTGATGTGT  295

seq1  AGTATATGAGCATTGGGTAAAAATTACTGAAAGGAACAATTTCAACTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGAGCATTGGGTAAAAATTACTGAAAGGAACAATTTCAACTTTC  345

seq1  TAAATTTGAGCAAGAAAGGTTTTCTTGTTATTTGAGAAAACTGGCAATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGAGCAAGAAAGGTTTTCTTGTTATTTGAGAAAACTGGCAATGA  395

seq1  CATTGGTTGTATATCTGTTTGGGGGCATGGGATCTGGTGTTTGGACATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTGTATATCTGTTTGGGGGCATGGGATCTGGTGTTTGGACATGT  445

seq1  GATTTGAGTTGACTCAGGTACATGTTACCCAAAATGGAACTTTTATTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGTTGACTCAGGTACATGTTACCCAAAATGGAACTTTTATTTCT  495

seq1  ACTGTACTTGGTTCAATAGTGAGCTTCTAAATGTATCCACTTTGAACCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACTTGGTTCAATAGTGAGCTTCTAAATGTATCCACTTTGAACCTT  545

seq1  TGAATATGACCCTCTTTAAAATGAAAAATTTTGAAGAACTAGTCATTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGACCCTCTTTAAAATGAAAAATTTTGAAGAACTAGTCATTTAA  595

seq1  GATGAAATCATATTGAATTATTTTGGAAATTTTATATATATGTATATATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATCATATTGAATTATTTTGGAAATTTTATATATATGTATATATA  645

seq1  TATGTATATATATATATATATATATATATATATATATATATATATATATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATATATATATATATATATATATATATATATATATATATATATG  695

seq1  TTATGTGATAAATCTCCTCCCAATATGCCCCAGCAATTAAAACACAACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGATAAATCTCCTCCCAATATGCCCCAGCAATTAAAACACAACAC  745

seq1  AGTTAATAGGATTACATGCTGTGTGCCTAGATTGGGCAGATCTACCACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAGGATTACATGCTGTGTGCCTAGATTGGGCAGATCTACCACTA  795

seq1  CACTACCATTTTCCACAGCTTATGAGACCCCTTAGAATTTGCAGTTTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCATTTTCCACAGCTTATGAGACCCCTTAGAATTTGCAGTTTCTC  845

seq1  CATGCCATGTGTTTCTGCTCTGCTTTTCTCCTTTTTCCTCCTCATCTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCATGTGTTTCTGCTCTGCTTTTCTCCTTTTTCCTCCTCATCTATG  895

seq1  TCCTCTCCCTTTTCCATTTTCTCCTTCTTCTCTCCCTCACCTTCTGATCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCCTTTTCCATTTTCTCCTTCTTCTCTCCCTCACCTTCTGATCC  945

seq1  ACCTTCCCTTTTATGTGCCCAGTCATCAGCTCTCCTTTATTTTATAAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTTTTATGTGCCCAGTCATCAGCTCTCCTTTATTTTATAAATT  995

seq1  AAGGTGGGATGCAGATTTACAGGAATTC  1027
      ||||||||||||||||||||||||||||
seq2  AAGGTGGGATGCAGATTTACAGGAATTC  1023