BAC Information

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BAC

Clone NameB6Ng01-156B09
Chromosome5 (Build37)
Map Location 66,500,021 - 66,696,231
singlet/doubletdoublet
Overlap geneBC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2
Upstream geneKlhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik
Downstream geneUchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B09.bB6Ng01-156B09.g
ACCDH950684DH950685
length1,1461,089
definitionDH950684|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B09, 5' end.DH950685|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,500,021 - 66,501,199)(66,695,138 - 66,696,231)
sequence
gaattctgtcccctccgttgtgccctatagttcttacaatgagattagag
ttcactgtgacagaggtaaatattgtaaagagaaattatctttagtagtt
aaggaaaggaagatcacttaactttaaggacaactaaaatttggaaaaga
ggactggagagatgcgttggacattaaaaaaagagagccggggttcagtt
cctggcacccacatgacagccctcaattgcccataactccatttccaggg
aatccgacacacacttctggcctttgtgaacaacagtcaccttcttggta
tacatacatacagacaaaatacccacatatataaaagataagtaaatcag
ttaataagataaatctttttgtaaaaaaaaaaattgtagaaagtttacag
aaataaggacttgtcatttctgcaaagtatcaaaatagtattggacatgt
gagcttaaaatgttcatttgtggactggagagatggctcagtggttaaga
gcactgactgttcttccaaaggtcctgagttcaattcccagcaaccacat
ggtggctcacaaccatctgtaatggaatccaattccctcttctgttgtgt
ctaaagacagctgcagtgtactcatagaaataaaaacaaataaatcttta
aaaacaaatgttcatttgttcaaagccaaatgttaggttggatcacctgc
gataaacccatagcagtcacagagcagtgtttctaatgtttttcacatag
attgtaagaaagatggtaatgattaccacaaggttgttagactttgggga
ctgaagatattctccaagagaagaaactaattttttttttcacataaaag
acaaattcattatttcagaaatagcctgggcaaagttagcaccatgaaag
gaaaggagatctctaattaagaagatcaagttaattacagttattctaag
aaatgagacattcatttacttgcttagaggggactgagagacatattgaa
aagtaaagagtattcagattaacacatcaaaaacaaacaacaacaacaac
aaatcaatcaactgtgatgttgatattcttggccagggatgcacatttga
gggttgctggttaaaagttgtcctggtggtatgggcctaagatcct
gaattcacaccccatctgtttcccacaccctggttcatggctgtggatct
gggagcctatgcctgggtgtcaaggagcaggcctgaggggagagaagcag
ggagcacaggcgctggggtgagccagggaaccaggtggagaccgttaggt
gggaggaagggctacaggagataaacaagtgctgtttcaatcaagcaaaa
acctagatattttacagaattgaaatggagcataacagatggtttgggcc
taaaatgaatggctttcactcgtaattatacattttaaatgctaatgaca
gttagctaattagttttaccagcggctacagttttgtttttccaaactcc
cggactcatttttctgcttggaaacatttttaaaaaaaaaaaattaataa
aaaaatgttattaatgcaaccagctggagtggctccagcagtgtggtacc
aggcacttgggtacaatccaggcccccccacactctgaatccagctctcc
cagtgcagccccttcttcatgcagattcatgccgctctctgtcctgagca
ctcactcatacatggattcctggtatccgagatacggcagtgatacacgc
ttgcttttaaggcataatttgcagctgtgttgtataggcctcgtgaagac
actttagtaaaatttaaaatcagagggggattctttatgaatttcatcag
ttacgtgtaattttgattcactccatacattcccacaaagccactgtttg
agatttcaagtccagggttcaatatcgtcgccaaacctgcgtggtgataa
attcatggtctcaaagtgtgtggttggtgacacagacttagcgagactcc
ttgcgagtgtcagacctgtgagaagtcattccttccggattgagtcgaag
gaaccagttatctggcctgacgatctgagaggacgtggaaactcacgccc
atctctcgcgggctgtgtcacgcgtttgagaaagaagcgctgtaacctgc
taaggagcctgtgacgttgacttgacttttgaaaaatcactgtgggtcgg
atcataatgtgcagaaaagatggcatgcagctcctcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66500021_66501199
seq2: B6Ng01-156B09.b_48_1193

seq1  GAATTCTGTCCCCTCCGTTGTGCCCTATAGTTCTTACAATGAGATTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCCCTCCGTTGTGCCCTATAGTTCTTACAATGAGATTAGAG  50

seq1  TTCACTGTGACAGAGGTAAATATTGTAAAGAGAAATTATCTTTAGTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTGACAGAGGTAAATATTGTAAAGAGAAATTATCTTTAGTAGTT  100

seq1  AAGGAAAGGAAGATCACTTAACTTTAAGGACAACTAAAATTTGGAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGAAGATCACTTAACTTTAAGGACAACTAAAATTTGGAAAAGA  150

seq1  GGACTGGAGAGATGCGTTGGACATTAAAAAAAGAGAGCCGGGGTTCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGAGAGATGCGTTGGACATTAAAAAAAGAGAGCCGGGGTTCAGTT  200

seq1  CCTGGCACCCACATGACAGCCCTCAATTGCCCATAACTCCATTTCCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACCCACATGACAGCCCTCAATTGCCCATAACTCCATTTCCAGGG  250

seq1  AATCCGACACACACTTCTGGCCTTTGTGAACAACAGTCACCTTCTTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGACACACACTTCTGGCCTTTGTGAACAACAGTCACCTTCTTGGTA  300

seq1  TACATACATACAGACAAAATACCCACATATATAAAAGATAAGTAAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACAGACAAAATACCCACATATATAAAAGATAAGTAAATCAG  350

seq1  TTAATAAGATAAATCTTTTTGTAAAAAAAAAAATTGTAGAAAGTTTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGATAAATCTTTTTGTAAAAAAAAAAATTGTAGAAAGTTTACAG  400

seq1  AAATAAGGACTTGTCATTTCTGCAAAGTATCAAAATAGTATTGGACATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGACTTGTCATTTCTGCAAAGTATCAAAATAGTATTGGACATGT  450

seq1  GAGCTTAAAATGTTCATTTGTGGACTGGAGAGATGGCTCAGTGGTTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAAAATGTTCATTTGTGGACTGGAGAGATGGCTCAGTGGTTAAGA  500

seq1  GCACTGACTGTTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACTGTTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACAT  550

seq1  GGTGGCTCACAACCATCTGTAATGGAATCCAATTCCCTCTTCTGTTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAACCATCTGTAATGGAATCCAATTCCCTCTTCTGTTGTGT  600

seq1  CTAAAGACAGCTGCAGTGTACTCATAGAAATAAAAACAAATAAATCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACAGCTGCAGTGTACTCATAGAAATAAAAACAAATAAATCTTTA  650

seq1  AAAACAAATGTTCATTTGTTCAAAGCCAAATGTTAGGTTGGATCACCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATGTTCATTTGTTCAAAGCCAAATGTTAGGTTGGATCACCTGC  700

seq1  GATAAACCCATAGCAGTCACAGAGCAGTGTTTCTAATGTTTTTCACATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCCATAGCAGTCACAGAGCAGTGTTTCTAATGTTTTTCACATAG  750

seq1  ATTGTAAGAAAGATGGTAATGATTACCACAAGGTTGTTAGACTTTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGAAAGATGGTAATGATTACCACAAGGTTGTTAGACTTTGGGGA  800

seq1  CTGAAGATATTCTCCAAGAGAAGAAACTAATTTTTTTTTTCACATAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATATTCTCCAAGAGAAGAAACTAATTTTTTTTTTCACATAAAAG  850

seq1  ACAAATTCATTATTTCAGAAATAGCCTGGGCAAAGTTAGCACCATGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCATTATTTCAGAAATAGCCTGGGCAAAGTTAGCACCATGAAAG  900

seq1  GAAAGGAGATCTCTAATTAAGAAGATCAAGTTTAATTACAGTTATTCTAA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAAGGAGATCTCTAATTAAGAAGATCAAG-TTAATTACAGTTATTCTAA  949

seq1  GAAATGAGGACATTCATTTACTTGCTTAGAGGGGGACTGAGGAGACAAAT  1000
      ||||||| |||||||||||||||||||||| ||||||||| |||||| ||
seq2  GAAATGA-GACATTCATTTACTTGCTTAGA-GGGGACTGA-GAGACATAT  996

seq1  TGAAAAGTTAAAAGAAGTAATTCAGATTAACAACAACCAAAAAACAAACA  1050
      ||||||||  |||| ||| |||||||||||| ||| |  |||||||||||
seq2  TGAAAAGT--AAAG-AGT-ATTCAGATTAAC-ACATC--AAAAACAAACA  1039

seq1  AACAAACAAACAAACAAAAATCAAAATCAAACTGTGATGGTTTGTATATT  1100
      |       |||||  | |||||  |||| ||||||||||  ||| |||||
seq2  A------CAACAACAACAAATC--AATC-AACTGTGATG--TTG-ATATT  1077

seq1  CTTGGGCCAGGGAGTGGCACCATTTGGAGGTGTGGCCTTGTTAGAATAGG  1150
      ||| |||||||||   ||| ||||| ||||  ||  || |||| ||   |
seq2  CTT-GGCCAGGGA--TGCA-CATTT-GAGGGTTG--CTGGTTAAAA---G  1117

seq1  TGTGTCCT-GTGGTATGGGCTTAAGATCCT  1179
      | |||||| ||||||||||| |||||||||
seq2  T-TGTCCTGGTGGTATGGGCCTAAGATCCT  1146

seq1: chr5_66695138_66696231
seq2: B6Ng01-156B09.g_69_1157 (reverse)

seq1  AAGGAGGAGCTGCCATGCCATCTCTCTGGCGCACTATGATCCGACCCACA  50
      |||||||||||| |||||||||| |   || || ||||||||||||||||
seq2  AAGGAGGAGCTG-CATGCCATCTTTTCTGCACATTATGATCCGACCCACA  49

seq1  GATGA-TTCTCAAAAGTCAAGTTCAACGTCAACAGGCTCCTTAGCAGGGT  99
      | ||| || |||||||||||| |||||||| ||||||||||||||| |||
seq2  G-TGATTTTTCAAAAGTCAAG-TCAACGTC-ACAGGCTCCTTAGCA-GGT  95

seq1  TACAGCCGCTTCTCTCTCAAACGCGTGACACAGCCCGCGAGAGATGGGCG  149
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACAG-CGCTTCTTTCTCAAACGCGTGACACAGCCCGCGAGAGATGGGCG  144

seq1  TGAGGTTTCCACGTCCTCTCAGATCGTCAGGCCAGATAACTGGTTCCTTC  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGA-GTTTCCACGTCCTCTCAGATCGTCAGGCCAGATAACTGGTTCCTTC  193

seq1  GACTCAATCCGGAAGG-ATGGCTTCTCACAGGTCTGACACTCGCAAGGGG  248
      |||||||||||||||| ||| ||||||||||||||||||||||||||| |
seq2  GACTCAATCCGGAAGGAATGACTTCTCACAGGTCTGACACTCGCAAGGAG  243

seq1  TCTCGCTAAGTCTGTGTCACCAACCACACACTTTGAGACCATGAATTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCTAAGTCTGTGTCACCAACCACACACTTTGAGACCATGAATTTAT  293

seq1  CACCACGCAGGTTTGGCGACGATATTGAACCCTGGACTTGAAATCTCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGCAGGTTTGGCGACGATATTGAACCCTGGACTTGAAATCTCAAA  343

seq1  CAGTGGCTTTGTGGGAATGTATGGAGTGAATCAAAATTACACGTAACTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTTTGTGGGAATGTATGGAGTGAATCAAAATTACACGTAACTGA  393

seq1  TGAAATTCATAAAGAATCCCCCTCTGATTTTAAATTTTACTAAAGTGTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCATAAAGAATCCCCCTCTGATTTTAAATTTTACTAAAGTGTCT  443

seq1  TCACGAGGCCTATACAACACAGCTGCAAATTATGCCTTAAAAGCAAGCGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAGGCCTATACAACACAGCTGCAAATTATGCCTTAAAAGCAAGCGT  493

seq1  GTATCACTGCCGTATCTCGGATACCAGGAATCCATGTATGAGTGAGTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTGCCGTATCTCGGATACCAGGAATCCATGTATGAGTGAGTGCT  543

seq1  CAGGACAGAGAGCGGCATGAATCTGCATGAAGAAGGGGCTGCACTGGGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGAGAGCGGCATGAATCTGCATGAAGAAGGGGCTGCACTGGGAG  593

seq1  AGCTGGATTCAGAGTGTGGGGGGGCCTGGATTGTACCCAAGTGCCTGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATTCAGAGTGTGGGGGGGCCTGGATTGTACCCAAGTGCCTGGTA  643

seq1  CCACACTGCTGGAGCCACTCCAGCTGGTTGCATTAATAACATTTTTTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGCTGGAGCCACTCCAGCTGGTTGCATTAATAACATTTTTTTAT  693

seq1  TAATTTTTTTTTTTTAAAAATGTTTCCAAGCAGAAAAATGAGTCCGGGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTTTTTTAAAAATGTTTCCAAGCAGAAAAATGAGTCCGGGAG  743

seq1  TTTGGAAAAACAAAACTGTAGCCGCTGGTAAAACTAATTAGCTAACTGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAAACAAAACTGTAGCCGCTGGTAAAACTAATTAGCTAACTGTC  793

seq1  ATTAGCATTTAAAATGTATAATTACGAGTGAAAGCCATTCATTTTAGGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATTTAAAATGTATAATTACGAGTGAAAGCCATTCATTTTAGGCC  843

seq1  CAAACCATCTGTTATGCTCCATTTCAATTCTGTAAAATATCTAGGTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATCTGTTATGCTCCATTTCAATTCTGTAAAATATCTAGGTTTTT  893

seq1  GCTTGATTGAAACAGCACTTGTTTATCTCCTGTAGCCCTTCCTCCCACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTGAAACAGCACTTGTTTATCTCCTGTAGCCCTTCCTCCCACCT  943

seq1  AACGGTCTCCACCTGGTTCCCTGGCTCACCCCAGCGCCTGTGCTCCCTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTCTCCACCTGGTTCCCTGGCTCACCCCAGCGCCTGTGCTCCCTGC  993

seq1  TTCTCTCCCCTCAGGCCTGCTCCTTGACACCCAGGCATAGGCTCCCAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCCTCAGGCCTGCTCCTTGACACCCAGGCATAGGCTCCCAGAT  1043

seq1  CCACAGCCATGAACCAGGGTGTGGGAAACAGATGGGGTGTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCATGAACCAGGGTGTGGGAAACAGATGGGGTGTGAATTC  1089