BAC Information

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BAC

Clone NameB6Ng01-156H12
Chromosome3 (Build37)5 (Build37)
Map Location 41,059,224 - 41,059,73794,417,093 - 94,418,212
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156H12.bB6Ng01-156H12.g
ACCDH950966DH950967
length9881,112
definitionDH950966|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H12, 5' end.DH950967|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(94,417,093 - 94,418,212)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgttt
ttctggagcctaccttcttgaattctttatatatatatattggatattag
tcctctatctgatttaggataggtaaagatcctttgccaatctgttgatg
gtctttttgtcttgttgatggtgtcttttgccttgcagaagctttgcaac
cttatgaggtcccatttattgattctcaatcttaacggcacaagctgttg
ctgttttttccagaacatttcccctgtacccatatctttgaggcttttct
ctactttctcctctataagtttcagtgtctctggttttatgtggagttcc
ttaatccacttagatttgaccttagtataaggagataggaatggatcaat
tcacattcttctccatgataaccgccagttgtgccagcaccatttgttga
aaatgctgtcttttttccactggatggttttagctcccttgtcaaagatc
aagtgaccataggtgtgtgggatcaggtgacagcagatgctggcgaggat
atggagaaagaggaacactcctccaaggttggtgggatttcaagcttgaa
caaccactctggaaatcagtctggcagtttctcagaaaactggatatagt
actaccggaggatcctgcaatacctctcttgggcatatatccagaagatg
ttccaaccggtaagaaggacacatgctccactatgttcatagcagcctta
tttattatagccagaagctggaaagaacccagatgtccctcaacagagga
atggatacagaaaatgtggcacatttacacaatggagtactactccgcta
ttaaaaagaatgaatttatgaaattcctaggcaaatggatgtacctggag
ggcatcatattgaatgagggtacccaataacaaagaactcacacaatatg
tactcactgatagaggatattagcccagaaacttagga
gaattctgtctcacccaaccaaataccaacaatgggaattgatgttaaat
aggcagctcagtcacttgtcctgggctttcatgaatgaaaatagcttcag
taaaaatttcaaattcctcgggtgaagagaaagagattttctacaaagag
gtttatagaggtcttttgggaaaagtaaggacaaatcaatactgaaaaga
aaaaattttccggataaaatgggatcaagacaaaggagactttgagctgg
gtcaggctcatgagcaggaaattagcctagggcctagcattgacctcgac
aatttaacaggcaccacagttattaatggaagggccacaagtacctctgg
cgagattaagacaatgactcactttttaccatgcatgaaaaatttcaagc
ctcaaaaggcatggaggcttttgtcaaaatacccactggtaagaaaagga
cttccttcaggtccaggctttgggctcaatgggaagggatccatccctta
tcctgttatattgctgaaagctgtttcccagagcttttctgtgattgacc
tgtgtccctctgagaagcttgtccagggtgtccttggggaattccatgcc
aaggatagaacacagtaggaatggtttcagcatgatgttaggagtgctgc
ccaggtgactttcatcttctgtttcatgctcttcagagtagaaggatgga
gagcctggcaggtgttgttattgtttgtttctttgtttgtgacttctgtc
tagttgagtgtttctctggtgttggctgaggctgagatcctgctgccaag
ccctgttctcttttctggccatgaaacttctagccccttttgctggtctg
tttctaagagtttttattctggtggcttgcttccctctaccacctatgca
ggtgtagcagctgcttcacagtgtgcccttagtatttagcatttacatct
tctagcccacacaattctttgcattgctaaccctgagcctcacagtagaa
ctgggaatgaacacttgtgagctctaaagcaaaacttgcttttctgcccc
attcagaaacggcattttttttcttggcttgcagtgtactcaaagtacag
gcaagaaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-156H12.b_47_565 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      ||||||| ||||||||| ||||||||||| |||||||||||| |||||||
seq2  TATCATGGAGAAGAATGTGAATTGATCCATTCCTATCTCCTTATACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  GTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||||| | |||||||||  |||||||||  |||||||
seq2  ACTTATAGAGGAGAAAGTAGAGAAAAGCCTCAAAGATATGGGTACAGGGG  250

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTG-TAAGATTGAGAAT  299
      |||  || ||| | | ||||||||  |||||||| | |||||||||||||
seq2  AAATGTT-CTGGAAAAAACAGCAACAGCTTGTGCCGTTAAGATTGAGAAT  299

seq1  AGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACA  349
        | |||||||||||||| |   |||||||||||||||||||||||||||
seq2  CAATAAATGGGACCTCATAAGGTTGCAAAGCTTCTGCAAGGCAAAAGACA  349

seq1  CCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACC  398
      || |||| |||||||||||  || ||||||||||| ||||||||||||||
seq2  CCATCAACAAGACAAAAAGACCATCAACAGATTGGCAAAGGATCTTTACC  399

seq1  TATCCTAAATCAGATAGGGGACTAATATCCA----ATATATATCAAGAAC  444
      ||||||||||||||||| |||||||||||||    |||||||| ||||| 
seq2  TATCCTAAATCAGATAGAGGACTAATATCCAATATATATATATAAAGAAT  449

seq1  TCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGC  494
      |||||||||| |  ||||||||| ||||||||||||||||||||||||||
seq2  TCAAGAAGGTAGGCTCCAGAAAAACAAATAACCCCATTAAAAAATGGGGC  499

seq1  TCAGAGCTAAACAAAGAATT  514
      |||||||| |||||||||||
seq2  TCAGAGCTGAACAAAGAATT  519

seq1: chr5_94417093_94418212
seq2: B6Ng01-156H12.g_69_1180

seq1  GAATTCTGTCTCACCCAACCAAATACCAACAATGGGAATTGATGTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCACCCAACCAAATACCAACAATGGGAATTGATGTTAAAT  50

seq1  AGGCAGCTCAGTCACTTGTCCTGGGCTTTCATGAATGAAAATAGCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTCAGTCACTTGTCCTGGGCTTTCATGAATGAAAATAGCTTCAG  100

seq1  TAAAAATTTCAAATTCCTCGGGTGAAGAGAAAGAGATTTTCTACAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTCAAATTCCTCGGGTGAAGAGAAAGAGATTTTCTACAAAGAG  150

seq1  GTTTATAGAGGTCTTTTGGGAAAAGTAAGGACAAATCAATACTGAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAGAGGTCTTTTGGGAAAAGTAAGGACAAATCAATACTGAAAAGA  200

seq1  AAAAATTTTCCGGATAAAATGGGATCAAGACAAAGGAGACTTTGAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTCCGGATAAAATGGGATCAAGACAAAGGAGACTTTGAGCTGG  250

seq1  GTCAGGCTCATGAGCAGGAAATTAGCCTAGGGCCTAGCATTGACCTCGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCTCATGAGCAGGAAATTAGCCTAGGGCCTAGCATTGACCTCGAC  300

seq1  AATTTAACAGGCACCACAGTTATTAATGGAAGGGCCACAAGTACCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAACAGGCACCACAGTTATTAATGGAAGGGCCACAAGTACCTCTGG  350

seq1  CGAGATTAAGACAATGACTCACTTTTTACCATGCATGAAAAATTTCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATTAAGACAATGACTCACTTTTTACCATGCATGAAAAATTTCAAGC  400

seq1  CTCAAAAGGCATGGAGGCTTTTGTCAAAATACCCACTGGTAAGAAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGGCATGGAGGCTTTTGTCAAAATACCCACTGGTAAGAAAAGGA  450

seq1  CTTCCTTCAGGTCCAGGCTTTGGGCTCAATGGGAAGGGATCCATCCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCAGGTCCAGGCTTTGGGCTCAATGGGAAGGGATCCATCCCTTA  500

seq1  TCCTGTTATATTGCTGAAAGCTGTTTCCCAGAGCTTTTCTGTGATTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTATATTGCTGAAAGCTGTTTCCCAGAGCTTTTCTGTGATTGACC  550

seq1  TGTGTCCCTCTGAGAAGCTTGTCCAGGGTGTCCTTGGGGAATTCCATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCTCTGAGAAGCTTGTCCAGGGTGTCCTTGGGGAATTCCATGCC  600

seq1  AAGGATAGAACACAGTAGGAATGGTTTCAGCATGATGTTAGGAGTGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAGAACACAGTAGGAATGGTTTCAGCATGATGTTAGGAGTGCTGC  650

seq1  CCAGGTGACTTTCATCTTCTGTTTCATGCTCTTCAGAGTAGAAGGATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGACTTTCATCTTCTGTTTCATGCTCTTCAGAGTAGAAGGATGGA  700

seq1  GAGCCTGGCAGGTGTTGTTATTGTTTGTTTCTTTGTTTGTGACTTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGCAGGTGTTGTTATTGTTTGTTTCTTTGTTTGTGACTTCTGTC  750

seq1  TAGTTGAGTGTTTCTCTGGTGTTGGCTGAGGCTGAGATCCTGCTGCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAGTGTTTCTCTGGTGTTGGCTGAGGCTGAGATCCTGCTGCCAAG  800

seq1  CCCTGTTCTC-TTTCTGGCCATGAAACTTCTAGCCCC-TTTGCTGGTCTG  848
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  CCCTGTTCTCTTTTCTGGCCATGAAACTTCTAGCCCCTTTTGCTGGTCTG  850

seq1  TTTCTAAGAGCTTTTATTCTGGTGGCTTGCTTCCCTCTACCACCTATGCA  898
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGAGTTTTTATTCTGGTGGCTTGCTTCCCTCTACCACCTATGCA  900

seq1  GGTGTAGCAGCTGCTTCACAGTTGTGCCCTTAGTATTTAGCATTCACATC  948
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  GGTGTAGCAGCTGCTTCACAG-TGTGCCCTTAGTATTTAGCATTTACATC  949

seq1  TTCCTAGCCCACACAATTCCTTTGCATTGCTAACCCTGAGCCTCCACAGT  998
      || ||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TT-CTAGCCCACACAATT-CTTTGCATTGCTAACCCTGAGCCT-CACAGT  996

seq1  AGGAACTGGGAATGAACACTTGTGAGCCTCAGAGCAAAACCTGC-TTTCT  1047
      | |||||||||||||||||||||||||   | |||||||| ||| |||||
seq2  A-GAACTGGGAATGAACACTTGTGAGCTCTAAAGCAAAACTTGCTTTTCT  1045

seq1  GCCCCAATCCAAGAACAGCCATTTTTTTCCTTGCTTGGCAGTTGTACTCA  1097
      |||||| ||  ||||  | ||||||||| ||||  | |||| ||||||||
seq2  GCCCCATTC--AGAAACGGCATTTTTTTTCTTGGCTTGCAG-TGTACTCA  1092

seq1  AAAAGGTACAGGCCAGAAACTGA  1120
      ||   |||||||| |||||||||
seq2  AA---GTACAGGCAAGAAACTGA  1112