BAC Information

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BAC

Clone NameB6Ng01-156J11
Chromosome5 (Build37)
Map Location 114,487,139 - 114,646,141
singlet/doubletdoublet
Overlap geneSvop, Usp30, Alkbh2, Ung, Acacb
Upstream geneCrybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1
Downstream geneFoxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156J11.bB6Ng01-156J11.g
ACCDH951055DH951056
length6881,113
definitionDH951055|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J11, 5' end.DH951056|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,487,139 - 114,487,820)(114,645,019 - 114,646,141)
sequence
gaattcccctgtggggcagggatggagctcagctctgactgattcattcc
cacgggcaaagggcacatcagccacttgcccagccatcacacgcaggaac
ccgggaaccatgctttgggccctttggggataaaggggccttgggaagat
tatttcagctgtgtttagtgactcttcttcgaagctgttagtgaaagatg
aatcaggagactccaaggctaagatagtccagtgtttgggaaatcttctg
tagacaagctccaaactgctgagtttctgaccaaccaggagctcccagga
gggactccaggacactctactgacctatccaagctaggagccctttcttg
tcacacttgtgtgtgaagctggtgcccatgttcctgggaactgcggctcc
tgtctgagttccagcctggctcctgcatcatatcgggccccagggataag
cgacagaatctaacccatgggatttatggaaacatagtacattctgtttt
gtagaatgaaatgtcttcaattttacagttgctctttctttcttcctttc
tttctgtttttgtttgtttgtttgtttgtttgtttgtgttgaggggggct
tgttttcgagacagggtttctctgttttaaccctgggctgtcttggcact
ttattctgtagaccttgcttggcctctatactcacaga
gaattcagtaaaacaaaaggatgccagaatgttctgcagaaattagtgtg
aattgaaccaggaagaaataactgagcaaatccatactgatggacattca
atctgaatgccaaaaacaccgattttggggccagtgagatggctcaactg
atataggtgactgctgccaagcctgatgacctgagttcaaatcctcagga
cccatgtgggggaagaagagaacctacaaaacatcttctgacacggcatg
atgtgctcacactcacacacaacacatgtgctcacactcacacaacatgc
ttggggcccggcttcgaaggtcctcacctgcaactgcgcagcaggcaggt
tgacatctgcgatcatttcagtgcacggatgctccacctgcaggcgtggg
ttcagctccaggaagtggaagctgccatcctggctgtataagtactccac
agtccccgcgctcacataacccaccatcttggccaggaggacagcacact
gcagagacagaggccaacggcaatctcaggtcaccatgaatgtcagcacc
tgttccctttccaggggcacactaaggacctgccacatggcaatcctcag
cgaccagacacatctgtgtgatgcctagatcaccaccttccagccaccat
gcctgtagccaggtctgccgactaagcccactcttccaaaggcacctacc
tgttccatgaactcaaacacggcaggcgcggcgatggtgggccggagcct
cctcaatgatcttctggtgccgcctctgaatggaacagtcccgtccgaac
agtgacatcgcgttttcatactgatctgccaagacctggacctccagtgc
cgtgcgttctggccagcttcattagaagatcggcgagcccggatctcact
ctgcacctgtttgggggaggcacgggtggggtcggatcaataaaggatcc
agctctggaagcttctgaagttcaacaattattcgtgatatgggcagggc
tacccatactccactccttcctcgattcattttaattccacagacagtgg
tttcctttccatcgtttaaggtcaaaaccgtacataaaacaaggcaccat
ttcttagttcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_114487139_114487820
seq2: B6Ng01-156J11.b_45_732

seq1  GAATTCCCCTGTGGGGCAGGGATGGAGCTCAGCTCTGACTGATTCATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGTGGGGCAGGGATGGAGCTCAGCTCTGACTGATTCATTCC  50

seq1  CACGGGCAAAGGGCACATCAGCCACTTGCCCAGCCATCACACGCAGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGCAAAGGGCACATCAGCCACTTGCCCAGCCATCACACGCAGGAAC  100

seq1  CCGGGAACCATGCTTTGGGCCCTTTGGGGATAAAGGGGCCTTGGGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAACCATGCTTTGGGCCCTTTGGGGATAAAGGGGCCTTGGGAAGAT  150

seq1  TATTTCAGCTGTGTTTAGTGACTCTTCTTCGAAGCTGTTAGTGAAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGCTGTGTTTAGTGACTCTTCTTCGAAGCTGTTAGTGAAAGATG  200

seq1  AATCAGGAGACTCCAAGGCTAAGATAGTCCAGTGTTTGGGAAATCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGAGACTCCAAGGCTAAGATAGTCCAGTGTTTGGGAAATCTTCTG  250

seq1  TAGACAAGCTCCAAACTGCTGAGTTTCTGACCAACCAGGAGCTCCCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGCTCCAAACTGCTGAGTTTCTGACCAACCAGGAGCTCCCAGGA  300

seq1  GGGACTCCAGGACACTCTACTGACCTATCCAAGCTAGGAGCCCTTTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCCAGGACACTCTACTGACCTATCCAAGCTAGGAGCCCTTTCTTG  350

seq1  TCACACTTGTGTGTGAAGCTGGTGCCCATGTTCCTGGGAACTGCGGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTGTGTGTGAAGCTGGTGCCCATGTTCCTGGGAACTGCGGCTCC  400

seq1  TGTCTGAGTTCCAGCCTGGCTCCTGCATCATATCGGGCCCCAGGGATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTTCCAGCCTGGCTCCTGCATCATATCGGGCCCCAGGGATAAG  450

seq1  CGACAGAATCTAACCCATGGGATTTATGGAAACATAGTACATTCTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGAATCTAACCCATGGGATTTATGGAAACATAGTACATTCTGTTTT  500

seq1  GTAGAATGAAATGTCTTCAATTTTACAGTTGCTCTTTCTTTCTTCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATGAAATGTCTTCAATTTTACAGTTGCTCTTTCTTTCTTCCTTTC  550

seq1  TTTCTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTGTTGAGGGGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTGTTGAGGGGGGCT  600

seq1  TG-TTTCGAGACAGGGTTTCTCTG-TGTAACCCT-GGCTGTCTTGGCAC-  646
      || ||||||||||||||||||||| | ||||||| |||||||||||||| 
seq2  TGTTTTCGAGACAGGGTTTCTCTGTTTTAACCCTGGGCTGTCTTGGCACT  650

seq1  TTACTCTGTAGACCAGGC-TGGCCTC-AAACTCACAGA  682
      ||| ||||||||||  || ||||||| | |||||||||
seq2  TTATTCTGTAGACCTTGCTTGGCCTCTATACTCACAGA  688

seq1: chr5_114645019_114646141
seq2: B6Ng01-156J11.g_69_1181 (reverse)

seq1  TATGTAACTAAGGAAATGGTGCCCTGTTTTATGTACGGTGTTTGACTTTA  50
      |||| |||||| ||||||||||| ||||||||||||||| |||||| || 
seq2  TATG-AACTAA-GAAATGGTGCCTTGTTTTATGTACGGT-TTTGACCTT-  46

seq1  AAACGATGAGAAAGCATACCACGTGTCTGTTGGAATTAAAATGAAATCGA  100
      |||||||| ||||| | ||||| |||||| ||||||||||||| ||||||
seq2  AAACGATG-GAAAGGAAACCAC-TGTCTG-TGGAATTAAAATG-AATCGA  92

seq1  GGAGGGAGTGGAGTATGGGGTAGCCCCTGCCCATATCACGACT-ATTGTT  149
      ||| |||||||||||| |||||| ||||||||||||||||| | ||||||
seq2  GGAAGGAGTGGAGTAT-GGGTAG-CCCTGCCCATATCACGAATAATTGTT  140

seq1  GAACTTCCAGAAGCTTCCAGAGCTGGATCCTCT-CTGATCCGACACCACC  198
      |||||| |||||||||||||||||||||||| |  ||||||||| |||||
seq2  GAACTT-CAGAAGCTTCCAGAGCTGGATCCTTTATTGATCCGACCCCACC  189

seq1  CGTGCCTCCCC--AACAGGTGCAGAGTGAGATTCCGGGCTCGCCGATCTT  246
      |||||||||||  |||||||||||||||||| |||||||||||||||| |
seq2  CGTGCCTCCCCCAAACAGGTGCAGAGTGAGA-TCCGGGCTCGCCGATC-T  237

seq1  TCTAATGAAGCTGGCCCAGAACGCACGGCACCTGGAGGTCCAGGTCTTGG  296
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  TCTAATGAAGCTGG-CCAGAACGCACGGCA-CTGGAGGTCCAGGTCTTGG  285

seq1  CAGATCAGTATGGAAACGCGGTGTCACTGTTCGGACGGGACTGTTCCATT  346
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  CAGATCAGTATGAAAACGCGATGTCACTGTTCGGACGGGACTGTTCCATT  335

seq1  CAGAGGCGGCACCAGAAGATCATTGAGGAGGCTCCGG-CCACCATCGCCG  395
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAGGCGGCACCAGAAGATCATTGAGGAGGCTCCGGCCCACCATCGCCG  385

seq1  CGCCTGCCGTGTTTGAGTTCATGGAACAGGTAGGTGCCTTTGGAAGAGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCGTGTTTGAGTTCATGGAACAGGTAGGTGCCTTTGGAAGAGTG  435

seq1  GGCTTAGTCGGCAGACCTGGCTACAGGCATGGTGGCTGGAAGGTGGTGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTCGGCAGACCTGGCTACAGGCATGGTGGCTGGAAGGTGGTGAT  485

seq1  CTAGGCATCACACAGATGTGTCTGGTCGCTGAGGATTGCCATGTGGCAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATCACACAGATGTGTCTGGTCGCTGAGGATTGCCATGTGGCAGG  535

seq1  TCCTTAGTGTGCCCCTGGAAAGGGAACAGGTGCTGACATTCATGGTGACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTGTGCCCCTGGAAAGGGAACAGGTGCTGACATTCATGGTGACC  585

seq1  TGAGATTGCCGTTGGCCTCTGTCTCTGCAGTGTGCTGTCCTCCTGGCCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGCCGTTGGCCTCTGTCTCTGCAGTGTGCTGTCCTCCTGGCCAA  635

seq1  GATGGTGGGTTATGTGAGCGCGGGGACTGTGGAGTACTTATACAGCCAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGGGTTATGTGAGCGCGGGGACTGTGGAGTACTTATACAGCCAGG  685

seq1  ATGGCAGCTTCCACTTCCTGGAGCTGAACCCACGCCTGCAGGTGGAGCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTTCCACTTCCTGGAGCTGAACCCACGCCTGCAGGTGGAGCAT  735

seq1  CCGTGCACTGAAATGATCGCAGATGTCAACCTGCCTGCTGCGCAGTTGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCACTGAAATGATCGCAGATGTCAACCTGCCTGCTGCGCAGTTGCA  785

seq1  GGTGAGGACCTTCGAAGCCGGGCCCCAAGCATGTTGTGTGAGTGTGAGCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGACCTTCGAAGCCGGGCCCCAAGCATGTTGTGTGAGTGTGAGCA  835

seq1  CATGTGTTGTGTGTGAGTGTGAGCACATCATGCCGTGTCAGAAGATGTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTGTGTGTGAGTGTGAGCACATCATGCCGTGTCAGAAGATGTTT  885

seq1  TGTAGGTTCTCTTCTTCCCCCACATGGGTCCTGAGGATTTGAACTCAGGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTCTCTTCTTCCCCCACATGGGTCCTGAGGATTTGAACTCAGGT  935

seq1  CATCAGGCTTGGCAGCAGTCACCTATATCAGTTGAGCCATCTCACTGGCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCTTGGCAGCAGTCACCTATATCAGTTGAGCCATCTCACTGGCC  985

seq1  CCAAAATCGGTGTTTTTGGCATTCAGATTGAATGTCCATCAGTATGGATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCGGTGTTTTTGGCATTCAGATTGAATGTCCATCAGTATGGATT  1035

seq1  TGCTCAGTTATTTCTTCCTGGTTCAATTCACACTAATTTCTGCAGAACAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTTATTTCTTCCTGGTTCAATTCACACTAATTTCTGCAGAACAT  1085

seq1  TCTGGCATCCTTTTGTTTTACTGAATTC  1123
      ||||||||||||||||||||||||||||
seq2  TCTGGCATCCTTTTGTTTTACTGAATTC  1113