BAC Information

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BAC

Clone NameB6Ng01-156L13
Chromosome5 (Build37)
Map Location 16,968,144 - 16,969,296
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668121, Hgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832
Downstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156L13.bB6Ng01-156L13.g
ACCDH951152DH951153
length1,1931,144
definitionDH951152|Mus musculus domesticus DNA, BAC clone: B6Ng01-156L13, 5' end.DH951153|Mus musculus domesticus DNA, BAC clone: B6Ng01-156L13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtctc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaagacttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaatttgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagttttatcatac
agatctttcacttccttcgttagagtcacgccgagatatttaaattattt
gtggctatgagaaggtgtgtttccctaaattcttctcagctggttaattc
tttgtgtagagaaatgccatgacttgttggagttaattatattcagctac
ttcacgaagcctgttatcacgtaggctctctgtggaatttaagggcactt
taataatcaatctatacctacgcaaaaggtgaaattttgactctgctgtt
caattgtgatcctggtaaccctctgtgcaaggtctcttgccat
gaattccaaatgtactgcaaagatgattggacaatatgacatggtgataa
attattattgacatttaatcactcatatttcaaaatttagagataaggac
tccaaccccattcttttagagtgcctaagatcttattgaagaaaatgata
attttctgttttaaacctgctttgactgaattgggtagctttgtcctgca
ttcttccatgaggaggatttatatgccatatgttgtggatgtgacagaga
acaaattagctgtgtctacatctaagaaggtccctagtaaaggttaaaat
gttgggttaacatttgatgagacttggggagttttccatcttttattaca
aataattcatttcatttccaaaataaagagtgataaaaataatggtgata
gggacaagcacaaactcgtcatgattcaatgacatctgattttacaagat
ggtaatttctgttgacaccagaaaaaccttccttgaataaagttaattaa
cattttaattgctactttttaccatctatccaatattataactacagatg
attacacatgctcataaattgaggttttaactaggacaacacatgcctag
agttttgcatgtttgattgtacattactagcaccaccaaatcaaagcctt
tccagagactgaagttgtgtgacagggaaatttttaggagattttaaatc
tcctgaagcaattcatctttgctacagaacactttacaatgtgtgcttgt
gctcctcagggagatatgtttacaacacttatcaaattcaaagcaaatcg
gaatatgttgcatacagaacatgtaattagcataaattgaacaagtaaag
gttataatttagaatttatttgaagaaataacatttagtatgagttttac
tacttattactaaagagataaaaaatactggtgaatagaatcccatacat
gtctggcacttaaaatcctcacagtaaacattcctctcaaagcaaataag
gtatttatttactgtaattccaggacatgcatcaaagtaccataaaatat
tgaacagggcatatatgtcctccatttttatatgtgtaggaacctaaaag
gtcgggttctaatcatgaatacaatatacctacctgagtggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16968144_16969296
seq2: B6Ng01-156L13.g_70_1213

seq1  GAATTCCAAATGTACTGCAAAGATGATTGGACAATATGACATGGTGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGTACTGCAAAGATGATTGGACAATATGACATGGTGATAA  50

seq1  ATTATTATTGACATTTAATCACTCATATTTCAAAATTTAGAGATAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTGACATTTAATCACTCATATTTCAAAATTTAGAGATAAGGAC  100

seq1  TCCAACCCCATTCTTTTAGAGTGCCTAAGATCTTATTGAAGAAAATGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCCATTCTTTTAGAGTGCCTAAGATCTTATTGAAGAAAATGATA  150

seq1  ATTTTCTGTTTTAAACCTGCTTTGACTGAATTGGGTAGCTTTGTCCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTTTTAAACCTGCTTTGACTGAATTGGGTAGCTTTGTCCTGCA  200

seq1  TTCTTCCATGAGGAGGATTTATATGCCATATGTTGTGGATGTGACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCATGAGGAGGATTTATATGCCATATGTTGTGGATGTGACAGAGA  250

seq1  ACAAATTAGCTGTGTCTACATCTAAGAAGGTCCCTAGTAAAGGTTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTAGCTGTGTCTACATCTAAGAAGGTCCCTAGTAAAGGTTAAAAT  300

seq1  GTTGGGTTAACATTTGATGAGACTTGGGGAGTTTTCCATCTTTTATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTTAACATTTGATGAGACTTGGGGAGTTTTCCATCTTTTATTACA  350

seq1  AATAATTCATTTCATTTCCAAAATAAAGAGTGATAAAAATAATGGTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCATTTCATTTCCAAAATAAAGAGTGATAAAAATAATGGTGATA  400

seq1  GGGACAAGCACAAACTCGTCATGATTCAATGACATCTGATTTTACAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAGCACAAACTCGTCATGATTCAATGACATCTGATTTTACAAGAT  450

seq1  GGTAATTTCTGTTGACACCAGAAAAACCTTCCTTGAATAAAGTTAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTTCTGTTGACACCAGAAAAACCTTCCTTGAATAAAGTTAATTAA  500

seq1  CATTTTAATTGCTACTTTTTACCATCTATCCAATATTATAACTACAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATTGCTACTTTTTACCATCTATCCAATATTATAACTACAGATG  550

seq1  ATTACACATGCTCATAAATTGAGGTTTTAACTAGGACAACACATGCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACATGCTCATAAATTGAGGTTTTAACTAGGACAACACATGCCTAG  600

seq1  AGTTTTGCATGTTTGATTGTACATTACTAGCACCACCAAATCAAAGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCATGTTTGATTGTACATTACTAGCACCACCAAATCAAAGCCTT  650

seq1  TCCAGAGACTGAAGTTGTGTGACAGGGAAATTTTTAGGAGATTTTAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGACTGAAGTTGTGTGACAGGGAAATTTTTAGGAGATTTTAAATC  700

seq1  TCCTGAAGCAATTCATCTTTGCCACAGAACACTTTACAATGTGTGCTTGT  750
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCTGAAGCAATTCATCTTTGCTACAGAACACTTTACAATGTGTGCTTGT  750

seq1  GCTCCTCAGGGAGATATGTTTACAACACTTATCAAATTCAAAGCAAATCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCAGGGAGATATGTTTACAACACTTATCAAATTCAAAGCAAATCG  800

seq1  GAATA-GTTGCATACAGAACATGTAACTAGCATAAAATTGAACAAGTAAA  849
      ||||| |||||||||||||||||||| |||||| ||||||||||||||||
seq2  GAATATGTTGCATACAGAACATGTAATTAGCAT-AAATTGAACAAGTAAA  849

seq1  GGTTATAAATTAGAAATTTATTTGAAGAAAATAACATTTAGTATGAGTTT  899
      |||||||| |||| ||||||||||||| ||||||||||||||||||||||
seq2  GGTTATAATTTAG-AATTTATTTGAAG-AAATAACATTTAGTATGAGTTT  897

seq1  TACTACTTATTACTAAAAGAAGATAAAAAATACTGGTGAATAGAATCACA  949
      |||||||||||||||||   ||||||||||||||||||||||||||| ||
seq2  TACTACTTATTACTAAA--GAGATAAAAAATACTGGTGAATAGAATCCCA  945

seq1  TACATTGTCTGGCACTTAAAATCCCCACAGTAAACATT-CTCTCAAAAGC  998
      |||| ||||||||||||||||||| ||||||||||||| ||||| |||||
seq2  TACA-TGTCTGGCACTTAAAATCCTCACAGTAAACATTCCTCTC-AAAGC  993

seq1  AAAATAAGAAATTTATTTACTGTAATTCCAAGACATGCATCAAAGTAACA  1048
       |||||||  |||||||||||||||||||| |||||||||||||||| ||
seq2  -AAATAAGGTATTTATTTACTGTAATTCCAGGACATGCATCAAAGTACCA  1042

seq1  TAAAAATATTGAACAGGGCATATATGT-CTTCATGTTTATTAATGTTGTA  1097
      | ||||||||||||||||||||||||| || ||| |||||  ||| ||| 
seq2  T-AAAATATTGAACAGGGCATATATGTCCTCCATTTTTAT--ATG-TGT-  1087

seq1  AGGAACATAAAA-GTC-GGTTCTAATCATGAATAACAAATATA-CTA-CT  1143
      |||||| ||||| ||| |||||||||||||||||   |||||| ||| ||
seq2  AGGAACCTAAAAGGTCGGGTTCTAATCATGAATA--CAATATACCTACCT  1135

seq1  GAGTTGGAAA  1153
      ||| ||||||
seq2  GAG-TGGAAA  1144