BAC Information

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BAC

Clone NameB6Ng01-156M20
Chromosome5 (Build37)
Map Location 19,834,663 - 19,954,264
singlet/doubletdoublet
Overlap geneMagi2
Upstream genenone
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156M20.bB6Ng01-156M20.g
ACCDH951210DH951211
length7481,131
definitionDH951210|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M20, 5' end.DH951211|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,834,663 - 19,835,410)(19,953,156 - 19,954,264)
sequence
gaattcatagatcaaaactggtgtgtgtatgcaggggtcctacatagact
tttccccttgaagtagtgtttgagttcattcaacgttagaattacattaa
tttggggaaatgtccccagtactcactctcagaatggatttttttgtctt
gggtcatatctctcttttctgcacatggacctgtgggagtgcagaagtca
cacttcccaggaaccaaccaacatgccagttgcttgttgatgttggcagc
cattgagcatctgagtgatgaagatgagggaattctgtaagcagagcctg
ggaaagcagccaaaagctgaaggatacaattttctgttaaggttggactt
cagtaagcaaaacacagtgctctctcttgatgtttgagtgcctgtcttgt
ttccactgtcccttctctgttttgttggcatttaacacttaaagggaaaa
aaaatgttttcagttcatggtgtcacaggtcctctctcctctgttttgtc
tttacatttttacatccaacccccatgatgcaagagaaaattgcattaat
ctagaatcatgaatttgtcttatcaaagaaaatatactttgaaactgatg
ggaagttcagcattctgaactttaattcttcttagggtcaaagcttctta
attcttctgaagaactatggcaaaaataaagaagggggaaggaaggaaag
aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaag
gaattctttaaggagtaaatagaaggggaggaattctagaaactgaaaac
caagtatctaatccattaaattaaatgatcctaaaagtgaacagtactta
gctggtgtataggtctgatggttccttcaagtgcacatgagcagtactgg
gcaggttttcctcttgagccaagagagcaaggatttatactgttttgtct
gaactcattatagctatgagagcttcagggcaaaggagtgcttcgggtgt
tgataagtatgggtgtggacacatgcagacacacaaatgcagacacacac
acacacacacacacacatagacacacacggacacacacacatagacacac
acagacaaagacacacacatagacacatacagacacattcacagacatac
acagacatacaaatatatacacacaaatacacatacacacacacacacac
ggacacacatatagacacacacagagacatacacagacatacaaatatat
acacacaaatacacacacacacacacacacaaatacacacacacacacac
acacacacacacacacacacacacacacacacaccagtctgtgatttatt
ttctctccttatacagagatctacacagaatccacagcttaggcgtttcc
aaggccagttcacacctatccattttgttcagctcctacctggctctttc
ctttcctgcttcccatgaaggtgccctaggggcagttaatttaaggatgc
agttcacctacttgctaaagttttatgcctgatgttcaaactggactctt
agcctgacttaatgtacttttaaagaatcagtttctggttcattttggga
catcagaaaacgaaaatgtaggcagttctattaaagaaaaattaataaga
aaacacatgctgcccccttctcggctgtttttaccctggggagcttttag
caaatagtattacatatggactgggtgctgctctgcccagaatccagcca
tggtttaaagctgaaaaaaagaaaaaagccctgttccccaagactactaa
ctgttccctgtctatcagaaggcttggctgggatgtcagccacaggtggt
gtggaatcagtctttaagataaacctctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19834663_19835410
seq2: B6Ng01-156M20.b_46_793

seq1  GAATTCATAGATCAAAACTGGTGTGTGTATGCAGGGGTCCTACATAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATCAAAACTGGTGTGTGTATGCAGGGGTCCTACATAGACT  50

seq1  TTTCCCCTTGAAGTAGTGTTTGAGTTCATTCAACGTTAGAATTACATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTTGAAGTAGTGTTTGAGTTCATTCAACGTTAGAATTACATTAA  100

seq1  TTTGGGGAAATGTCCCCAGTACTCACTCTCAGAATGGATTTTTTTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAAATGTCCCCAGTACTCACTCTCAGAATGGATTTTTTTGTCTT  150

seq1  GGGTCATATCTCTCTTTTCTGCACATGGACCTGTGGGAGTGCAGAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATATCTCTCTTTTCTGCACATGGACCTGTGGGAGTGCAGAAGTCA  200

seq1  CACTTCCCAGGAACCAACCAACATGCCAGTTGCTTGTTGATGTTGGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCAGGAACCAACCAACATGCCAGTTGCTTGTTGATGTTGGCAGC  250

seq1  CATTGAGCATCTGAGTGATGAAGATGAGGGAATTCTGTAAGCAGAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCATCTGAGTGATGAAGATGAGGGAATTCTGTAAGCAGAGCCTG  300

seq1  GGAAAGCAGCCAAAAGCTGAAGGATACAATTTTCTGTTAAGGTTGGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAGCCAAAAGCTGAAGGATACAATTTTCTGTTAAGGTTGGACTT  350

seq1  CAGTAAGCAAAACACAGTGCTCTCTCTTGATGTTTGAGTGCCTGTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCAAAACACAGTGCTCTCTCTTGATGTTTGAGTGCCTGTCTTGT  400

seq1  TTCCACTGTCCCTTCTCTGTTTTGTTGGCATTTAACACTTAAAGGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGTCCCTTCTCTGTTTTGTTGGCATTTAACACTTAAAGGGAAAA  450

seq1  AAAATGTTTTCAGTTCATGGTGTCACAGGTCCTCTCTCCTCTGTTTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTTCAGTTCATGGTGTCACAGGTCCTCTCTCCTCTGTTTTGTC  500

seq1  TTTACATTTTTACATCCAACCCCCATGATGCAAGAGAAAATTGCATTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTTTACATCCAACCCCCATGATGCAAGAGAAAATTGCATTAAT  550

seq1  CTAGAATCATGAATTTGTCTTATCAAAGAAAATATACTTTGAAACTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCATGAATTTGTCTTATCAAAGAAAATATACTTTGAAACTGATG  600

seq1  GGAAGTTCAGCATTCTGAACTTTAATTCTTCTTAGGGTCAAAGCTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCAGCATTCTGAACTTTAATTCTTCTTAGGGTCAAAGCTTCTTA  650

seq1  ATTCTTCTGAAGAACTATGGCAAAAATAAAGAAGGGGGAAGGAAGGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTGAAGAACTATGGCAAAAATAAAGAAGGGGGAAGGAAGGAAAG  700

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  748
      |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAG  748

seq1: chr5_19953156_19954264
seq2: B6Ng01-156M20.g_70_1200 (reverse)

seq1  TTCAGAAG-TTATC-TAAAGACTGA-TCCACAC--ACTGT-GCTGACAT-  43
      |||||| | ||||| |||||||||| |||||||   |||| |||||||| 
seq2  TTCAGAGGTTTATCTTAAAGACTGATTCCACACCACCTGTGGCTGACATC  50

seq1  CCAGCC-AGCC-TCTGA-AGACAAGGAACAG-TAGTAGTCT--GGGGACA  87
      |||||| |||| ||||| ||||| ||||||| |||||||||  ||| |||
seq2  CCAGCCAAGCCTTCTGATAGACAGGGAACAGTTAGTAGTCTTGGGGAACA  100

seq1  GGGCTTGTT--CTTTCTTCAGC-TTAAACCATGGCTGGA-TCTGGGCAGA  133
      |||||| ||   ||| |||||| |||||||||||||||| ||||||||||
seq2  GGGCTTTTTTCTTTTTTTCAGCTTTAAACCATGGCTGGATTCTGGGCAGA  150

seq1  GCAGCACCCAGTCCATAAGTAATACTATATGCT-AAAGCTCCCCAGGGGT  182
      ||||||||||||||||| |||||||||| |||| ||||||||||||||  
seq2  GCAGCACCCAGTCCATATGTAATACTATTTGCTAAAAGCTCCCCAGGGTA  200

seq1  AAAACAGCCGAG-AGGGGGCAGCATGTG-TTTCTAATT-ATTTTTCTTTA  229
      |||||||||||| ||||||||||||||| ||||| ||| |||||||||||
seq2  AAAACAGCCGAGAAGGGGGCAGCATGTGTTTTCTTATTAATTTTTCTTTA  250

seq1  ATAGAACTGCCTACATTTTCGTTTTCTGATGT-CCAAAATGAACCAGAAA  278
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAGAACTGCCTACATTTTCGTTTTCTGATGTCCCAAAATGAACCAGAAA  300

seq1  CTGATTCTTTAAAAGTACATTAAGTCAGGCTAAGAGTCCAGTTTGAACAT  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTTTAAAAGTACATTAAGTCAGGCTAAGAGTCCAGTTTGAACAT  350

seq1  CAGGCATAAAACTTTAGCAAGTAGGTGAACTGCATCCTTAAATTAACTGC  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATAAAACTTTAGCAAGTAGGTGAACTGCATCCTTAAATTAACTGC  400

seq1  CCCTAGGGCACCTTCATGGGAAGCAGGAAAGGAAAGAGCCAGGTAGGAGC  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGGCACCTTCATGGGAAGCAGGAAAGGAAAGAGCCAGGTAGGAGC  450

seq1  TGAACAAAATGGATAGGTGTGAACTGGCCTTGGAAACGCCTAAGCTGTGG  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAATGGATAGGTGTGAACTGGCCTTGGAAACGCCTAAGCTGTGG  500

seq1  ATTCTGTGTAGATCTCTGTATAAGGAGAGAAAATAAATCACAGACTGGTG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTAGATCTCTGTATAAGGAGAGAAAATAAATCACAGACTGGTG  550

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATT  600

seq1  TGTGTGTGTGTGTGTGTGTGTATTTGTGTGTATATATTTGTATGTCTGTG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTATTTGTGTGTATATATTTGTATGTCTGTG  650

seq1  TATGTCTCTGTGTGTGTCTATATGTGTGTCCGTGTGTGTGTGTGTGTATG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCTGTGTGTGTCTATATGTGTGTCCGTGTGTGTGTGTGTGTATG  700

seq1  TGTATTTGTGTGTATATATTTGTATGTCTGTGTATGTCTGTGAATGTGTC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTGTGTATATATTTGTATGTCTGTGTATGTCTGTGAATGTGTC  750

seq1  TGTATGTGTCTATGTGTGTGTCTTTGTCTGTGTGTGTCTATGTGTGTGTG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTCTATGTGTGTGTCTTTGTCTGTGTGTGTCTATGTGTGTGTG  800

seq1  TCCGTGTGTGTCTATGTGTGTGTGTGTGTGTGTGTGTGTCTGCATTTGTG  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGTGTGTCTATGTGTGTGTGTGTGTGTGTGTGTGTCTGCATTTGTG  850

seq1  TGTCTGCATGTGTCCACACCCATACTTATCAACACCCGAAGCACTCCTTT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCATGTGTCCACACCCATACTTATCAACACCCGAAGCACTCCTTT  900

seq1  GCCCTGAAGCTCTCATAGCTATAATGAGTTCAGACAAAACAGTATAAATC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAGCTCTCATAGCTATAATGAGTTCAGACAAAACAGTATAAATC  950

seq1  CTTGCTCTCTTGGCTCAAGAGGAAAACCTGCCCAGTACTGCTCATGTGCA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTCTTGGCTCAAGAGGAAAACCTGCCCAGTACTGCTCATGTGCA  1000

seq1  CTTGAAGGAACCATCAGACCTATACACCAGCTAAGTACTGTTCACTTTTA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGAACCATCAGACCTATACACCAGCTAAGTACTGTTCACTTTTA  1050

seq1  GGATCATTTAATTTAATGGATTAGATACTTGGTTTTCAGTTTCTAGAATT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTTAATTTAATGGATTAGATACTTGGTTTTCAGTTTCTAGAATT  1100

seq1  CCTCCCCTTCTATTTACTCCTTAAAGAATTC  1109
      |||||||||||||||||||||||||||||||
seq2  CCTCCCCTTCTATTTACTCCTTAAAGAATTC  1131