BAC Information

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BAC

Clone NameB6Ng01-157I24
Chromosome5 (Build37)
Map Location 31,111,355 - 31,196,314
singlet/doubletdoublet
Overlap geneMapre3, 1110039B18Rik, 9430057O19Rik
Upstream geneDnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5
Downstream gene2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157I24.bB6Ng01-157I24.g
ACCDH951762DH951763
length1,088105
definitionDH951762|Mus musculus domesticus DNA, BAC clone: B6Ng01-157I24, 5' end.DH951763|Mus musculus domesticus DNA, BAC clone: B6Ng01-157I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,195,217 - 31,196,314)(31,111,355 - 31,111,459)
sequence
gaattcaaggagatgagctttggatatagcatgttttccacctgtgtgtg
gagaaaaaaggggaactcagaaaatgacagagaaagaagggacaaggaca
agaaaaataaggcacagtcgtgttactctgccgcatatgtcacccgcata
caacatcacaaccatcaggagtaaccacgttttcttcacgcgtcactgtt
tagcactgtttcttttaagctcagattcccctccaaattttccttctctg
gttctcagctctatggaagacgggggtgctgggcttgttcttcactcaga
caccatgatgcaatggctaagctctctggccctagtgccttctctccatc
ctttgaagcttgtgctgaggtggtgtgcacaggtcttcctgctcctctag
aaggctcccctgccctggtttgtaactacccctcatctcctaacctgcag
gactgactgccacaggattcagagtcctacctgggtgctctcgtcactaa
agctgttgccatacatgaagcagccccttttggaagcatgtccgtgcaag
tctacatagtaagcaacaccactctcttttggggggatggtgtcaggggc
tggctcctcgagttcaggaattggctgtggcataagccacacagggtcag
tcttctcttctgctggctctgtctcaggccaagtcgcagggttttcccca
tcaggtgactgcccgaggtgagcttcattgtggagattattggctttctc
gaggtcagagagaggggcttccggagggagatggagagtgggttgctggt
tcgtgggactcttggcgttgagcctcgagtgcacgtgatgaaaaagcagc
acagcttttgcgccatagatggccgggtgcaggacggcatcaggcttcaa
gtactgaccggttcagattcactctacggagtcgtgctgtaggaagacag
gactcaacaggctctagatgtctgggccacaaaggagacattatggtagt
gacaggacactgagactttgtaagtgaaaggctaggtatgcttgaaagaa
gacgagctttccttcatgtgcggtcatgccacatagtc
tttccaatttatgtatctgataaaaggttggttagcagaaaacactctta
ctactgaacaacaggaaaaaattcaagatagactgggtgtgggtgggtgg
ggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31195217_31196314
seq2: B6Ng01-157I24.b_46_1133 (reverse)

seq1  GACTATGGTGGCATGACCGCACATGAAGGAAGGCTCTGTCCTTCTTTCCA  50
      |||||| |||||||||||||||||||||||| |||| || |||||||| |
seq2  GACTAT-GTGGCATGACCGCACATGAAGGAAAGCTC-GT-CTTCTTTCAA  47

seq1  GCATGACTTAAGCCTTTCACTTTACAAGTCTTCAGTGTCCTTGTCACCTA  100
      ||||  ||  ||||||||||||   ||||| ||||||||| ||||| |||
seq2  GCATACCT--AGCCTTTCACTTACAAAGTC-TCAGTGTCC-TGTCA-CTA  92

seq1  CCCTAATGTCTCCTTTGGTGGCCCAGACATCTAGAGCCTGTTGAGTCCTG  150
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCATAATGTCTCCTTT-GTGGCCCAGACATCTAGAGCCTGTTGAGTCCTG  141

seq1  TCTTCCTACAGCACGGACTCCCGTGGAGTGAATCTGAACC-GTCAGTACT  199
      |||||||||||||| |||| |||| ||||||||||||||| |||||||||
seq2  TCTTCCTACAGCAC-GACT-CCGTAGAGTGAATCTGAACCGGTCAGTACT  189

seq1  TGAAGCCTGATGCCGTCCTGCACCCGGCCATCTATGGCGCCAAAGCTGTG  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAAGCCTGATGCCGTCCTGCACCCGGCCATCTATGGCGCAAAAGCTGTG  239

seq1  CTGCTTTATCATCACGTGCACTCGAGGCTCAACGCCAAGAGTCCCACGAA  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTCATCACGTGCACTCGAGGCTCAACGCCAAGAGTCCCACGAA  289

seq1  CCAGCAACCCACTCTCCATCTCCCTCCGGAAGCCCCTCTCTCTGACCTCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCCACTCTCCATCTCCCTCCGGAAGCCCCTCTCTCTGACCTCG  339

seq1  AGAAAGCCAATAATCTCCACAATGAAGCTCACCTCGGGCAGTCACCTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCAATAATCTCCACAATGAAGCTCACCTCGGGCAGTCACCTGAT  389

seq1  GGGGAAAACCCTGCGACTTGGCCTGAGACAGAGCCAGCAGAAGAGAAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAACCCTGCGACTTGGCCTGAGACAGAGCCAGCAGAAGAGAAGAC  439

seq1  TGACCCTGTGTGGCTTATGCCACAGCCAATTCCTGAACTCGAGGAGCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGTGTGGCTTATGCCACAGCCAATTCCTGAACTCGAGGAGCCAG  489

seq1  CCCCTGACACCATCCCCCCAAAAGAGAGTGGTGTTGCTTACTATGTAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGACACCATCCCCCCAAAAGAGAGTGGTGTTGCTTACTATGTAGAC  539

seq1  TTGCACGGACATGCTTCCAAAAGGGGCTGCTTCATGTATGGCAACAGCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACGGACATGCTTCCAAAAGGGGCTGCTTCATGTATGGCAACAGCTT  589

seq1  TAGTGACGAGAGCACCCAGGTAGGACTCTGAATCCTGTGGCAGTCAGTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACGAGAGCACCCAGGTAGGACTCTGAATCCTGTGGCAGTCAGTCC  639

seq1  TGCAGGTTAGGAGATGAGGGGTAGTTACAAACCAGGGCAGGGGAGCCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTAGGAGATGAGGGGTAGTTACAAACCAGGGCAGGGGAGCCTTC  689

seq1  TAGAGGAGCAGGAAGACCTGTGCACACCACCTCAGCACAAGCTTCAAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGCAGGAAGACCTGTGCACACCACCTCAGCACAAGCTTCAAAGG  739

seq1  ATGGAGAGAAGGCACTAGGGCCAGAGAGCTTAGCCATTGCATCATGGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAAGGCACTAGGGCCAGAGAGCTTAGCCATTGCATCATGGTGT  789

seq1  CTGAGTGAAGAACAAGCCCAGCACCCCCGTCTTCCATAGAGCTGAGAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGAAGAACAAGCCCAGCACCCCCGTCTTCCATAGAGCTGAGAACC  839

seq1  AGAGAAGGAAAATTTGGAGGGGAATCTGAGCTTAAAAGAAACAGTGCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGAAAATTTGGAGGGGAATCTGAGCTTAAAAGAAACAGTGCTAA  889

seq1  ACAGTGACGCGTGAAGAAAACGTGGTTACTCCTGATGGTTGTGATGTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACGCGTGAAGAAAACGTGGTTACTCCTGATGGTTGTGATGTTGT  939

seq1  ATGCGGGTGACATATGCGGCAGAGTAACACGACTGTGCCTTATTTTTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGGTGACATATGCGGCAGAGTAACACGACTGTGCCTTATTTTTCTT  989

seq1  GTCCTTGTCCCTTCTTTCTCTGTCATTTTCTGAGTTCCCCTTTTTTCTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTCCCTTCTTTCTCTGTCATTTTCTGAGTTCCCCTTTTTTCTCC  1039

seq1  ACACACAGGTGGAAAACATGCTATATCCAAAGCTCATCTCCTTGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGGTGGAAAACATGCTATATCCAAAGCTCATCTCCTTGAATTC  1088

seq1: chr5_31111355_31111459
seq2: B6Ng01-157I24.g_71_175

seq1  TTTCCAATTTATGTATCTGATAAAAGGTTGGTTAGCAGAAAACACTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTTATGTATCTGATAAAAGGTTGGTTAGCAGAAAACACTCTTA  50

seq1  CTACTGAACAACAGGAAAAAATTCAAGATAGACTGGGTGTGGGTGGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAACAACAGGAAAAAATTCAAGATAGACTGGGTGTGGGTGGGTGG  100

seq1  GGAGG  105
      |||||
seq2  GGAGG  105