BAC Information

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BAC

Clone NameB6Ng01-157K12
Chromosome5 (Build37)
Map Location 135,697,084 - 135,736,549
singlet/doubletdoublet
Overlap geneBaz1b, Fzd9
Upstream geneNcf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069
Downstream geneFkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157K12.bB6Ng01-157K12.g
ACCDH951830DH951831
length1,114370
definitionDH951830|Mus musculus domesticus DNA, BAC clone: B6Ng01-157K12, 5' end.DH951831|Mus musculus domesticus DNA, BAC clone: B6Ng01-157K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,697,084 - 135,698,220)(135,736,174 - 135,736,549)
sequence
gaattctaggccagcctggtctaaattgtgagttgaaggatagccagagc
tacacagagaaaccctgttttgagaggtgtgagtggcacagtggtaccac
atttaacatccacactcctgaggtagaaatccatgagttcaggccagctg
ctctttacatattcttacttgattttcttttctctctctcctgtcaatca
cattaaaggagcccagtgtggtggcctatacctttaattgcagcactcag
gaacaaaggcaggcaggccctagttgaaggccagccagatctatatagtg
agaccttgtatgtatgtacatccatttgtgcatgtatacattcatactta
gataagttgtcacaggttcttcttgattgaaataatttttttttctgcac
agactttctctgtgtggtcttggatgtcctagaactcattctgtagaaca
ggctggctttgaattaacagagatccgcctggctctacctccctagtgct
aggatcaaaggcatgcaccacccctccttccatgtgcactcttatctttg
aattattttctttttaattcatcctggtctgtttagggatcctgtggcag
tgaggggtgagacgttgtaagggatgtgggaggatcatagattatcatgt
tctatattacatggcataggaagaaaggaaggcccgggaaacttgtgctc
catacaactcttgtttttttttttttttttttaatcttcaccagtgagat
tggaacgggaagctgaagaggaacgaatgcgggaaacacaaggcctgctg
ccgagaaggcttttcaggaagggattgccaagcaaaacttgtactgcgca
gacaccctattggtacagaccgcaacataacaggtaagttactcacttaa
tttccgtgtcttctgagaggggaagcagctataggtgtagagacaactgc
tttctgttcagttctcagttctgttgtaggatgatttcccaatgtgcacc
aatgactactactggtgtcgaatgtcagggtatgacgtagataggaagtc
tccagctgttgtagctattcgactctgctataccatgggttaattcatga
attaaaaagtctca
tttctgtgacaatgctgggaccctggggacaggggactgagccctcacac
cgctgggcagagctgtcacactgctcccgagactgctccactctgcattg
tcactgagcaagtgtcctgccagcaccaggcccttctcctgtccaacaat
taatgtcctgttggggcccacataaacggctgcaactctgtgtgtgtgtg
cgtgtgcatgtgcatgtgtgtgtgcgtgtgtgttttgagtatgtaaccct
gccctggaactccttatgtagagcaggctggcctccaactcacatacatt
ctcctgcctctacctcctgaatgctgggactaaaggcctgcgccaccaca
cttagctctttcttttttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135697084_135698220
seq2: B6Ng01-157K12.b_46_1159

seq1  GAATTCTAGGCCAGCCTGGTCTAAATTGTGAGTTGAAGGATAGCCAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCAGCCTGGTCTAAATTGTGAGTTGAAGGATAGCCAGAGC  50

seq1  TACACAGAGAAACCCTGTTTTGAGAGGTGTGAGTGGCACAGTGGTACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTTTTGAGAGGTGTGAGTGGCACAGTGGTACCAC  100

seq1  ATTTAACATCCACACTCCTGAGGTAGAAATCCATGAGTTCAGGCCAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACATCCACACTCCTGAGGTAGAAATCCATGAGTTCAGGCCAGCTG  150

seq1  CTCTTTACATATTCTTACTTGATTTTCTTTTCTCTCTCTCCTGTCAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACATATTCTTACTTGATTTTCTTTTCTCTCTCTCCTGTCAATCA  200

seq1  CATTAAAGGAGCCCAGTGTGGTGGCCTATACCTTTAATTGCAGCACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGGAGCCCAGTGTGGTGGCCTATACCTTTAATTGCAGCACTCAG  250

seq1  GAACAAAGGCAGGCAGGCCCTAGTTGAAGGCCAGCCAGATCTATATAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGGCAGGCAGGCCCTAGTTGAAGGCCAGCCAGATCTATATAGTG  300

seq1  AGACCTTGTATGTATGTACATCCATTTGTGCATGTATACATTCATACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGTATGTATGTACATCCATTTGTGCATGTATACATTCATACTTA  350

seq1  GATAAGTTGTCACAGGTTCTTCTTGATTGAAATAATTTTTTTTTCTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTGTCACAGGTTCTTCTTGATTGAAATAATTTTTTTTTCTGCAC  400

seq1  AGACTTTCTCTGTGTGGTCTTGGATGTCCTAGAACTCATTCTGTAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCTCTGTGTGGTCTTGGATGTCCTAGAACTCATTCTGTAGAACA  450

seq1  GGCTGGCTTTGAATTAACAGAGATCCGCCTGGCTCTACCTCCCTAGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTTTGAATTAACAGAGATCCGCCTGGCTCTACCTCCCTAGTGCT  500

seq1  AGGATCAAAGGCATGCACCACCCCTCCTTCCATGTGCACTCTTATCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAGGCATGCACCACCCCTCCTTCCATGTGCACTCTTATCTTTG  550

seq1  AATTATTTTCTTTTTAATTCATCCTGGTCTGTTTAGGGATCCTGTGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTCTTTTTAATTCATCCTGGTCTGTTTAGGGATCCTGTGGCAG  600

seq1  TGAGGGGTGAGACGTTGTAAGGGATGTGGGAGGATCATAGATTATCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGTGAGACGTTGTAAGGGATGTGGGAGGATCATAGATTATCATGT  650

seq1  TCTATATTACATGGCATAGGAAGAAAGGAAGGCCCGGGAAACTTGTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTACATGGCATAGGAAGAAAGGAAGGCCCGGGAAACTTGTGCTC  700

seq1  CATACAACTCTTGTTTTTTTTTTTTTTTTTTTAATCTTCACCAGTGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAACTCTTGTTTTTTTTTTTTTTTTTTTAATCTTCACCAGTGAGAT  750

seq1  TGGAACGGGAAGCTGAAGAGGAACGAATGC-GGAAACACAAGG-CTGCTG  798
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TGGAACGGGAAGCTGAAGAGGAACGAATGCGGGAAACACAAGGCCTGCTG  800

seq1  CCGAGAAGGCTTTCCAGGAAGGGATTGCCAAGGCAAAACTTGTACTGCGC  848
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CCGAGAAGGCTTTTCAGGAAGGGATTGCCAA-GCAAAACTTGTACTGCGC  849

seq1  AGGACA-CCTATTGGTACAGACCGCAACCATAACAGGTAAGTTACTCAAC  897
      | |||| |||||||||||||||||||| ||||||||||||||||||| ||
seq2  A-GACACCCTATTGGTACAGACCGCAA-CATAACAGGTAAGTTACTC-AC  896

seq1  TTAATTTCCGTGTCTTCTGAGA-GGGAAGCTAGCTA-AGGTGCTAGAGAC  945
      |||||||||||||||||||||| ||||||| ||||| ||||| |||||||
seq2  TTAATTTCCGTGTCTTCTGAGAGGGGAAGC-AGCTATAGGTG-TAGAGAC  944

seq1  AAACTGC-TTCTGTTCAGTTCTTCAGTTCTGTTTGTAGCGATGATTTCTC  994
       |||||| ||||||||||||| ||||||||| |||||| ||||||||| |
seq2  -AACTGCTTTCTGTTCAGTTC-TCAGTTCTG-TTGTAG-GATGATTTCCC  990

seq1  ATTGTGCAACTATTGACTACTACTGGTGTCAGATGTCAGGGTTATGACGT  1044
      | ||||| || | |||||||||||||||||  ||||||||| ||||||| 
seq2  AATGTGC-ACCAATGACTACTACTGGTGTCGAATGTCAGGG-TATGACG-  1037

seq1  TAGATAAGACAGTCTCCCAGGCTTGTTGGTAGCTTATATCGGAGCTCTTG  1094
      |||||| || ||||| ||||   |||| |||||   |||  || ||| ||
seq2  TAGATAGGA-AGTCT-CCAG--CTGTT-GTAGC---TATTCGA-CTC-TG  1077

seq1  CATAAACCATGGGTTCTATTCCTATGATTAAGAAAAAGTCTCA  1137
      | || ||||||||||  ||||  ||||  |  |||||||||||
seq2  C-TATACCATGGGTT-AATTC--ATGA--ATTAAAAAGTCTCA  1114

seq1: chr5_135736174_135736549
seq2: B6Ng01-157K12.g_68_443 (reverse)

seq1  TGAAAAAAGAAAGAGCTAGGTGTGGTGGCGCAGGCCTTTAGTCCCAGCAT  50
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAAAAAAGAAAGAGCTAAGTGTGGTGGCGCAGGCCTTTAGTCCCAGCAT  50

seq1  TCAGGAGGTAGAGGCAGGAGAATGTCTGTGAGTTGGAGGCCAGCCTGCTC  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGGAGGTAGAGGCAGGAGAATGTATGTGAGTTGGAGGCCAGCCTGCTC  100

seq1  TACATAAGGAGTTCCAGGGCAGGGTTACATACTCAAAACACACACGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGGAGTTCCAGGGCAGGGTTACATACTCAAAACACACACGCACA  150

seq1  CACACATGCACATGCACACGCACACACACACAGAGTTGCAGCCGTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCACATGCACACGCACACACACACAGAGTTGCAGCCGTTTATG  200

seq1  TGGGCCCCAACAGGACATTAATTGTTGGACAGGAGAAGGGCCTGGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCAACAGGACATTAATTGTTGGACAGGAGAAGGGCCTGGTGCTG  250

seq1  GCAGGACACTTGCTCAGTGACAATGCAGAGTGGAGCAGTCTCGGGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACACTTGCTCAGTGACAATGCAGAGTGGAGCAGTCTCGGGAGCAG  300

seq1  TGTGACAGCTCTGCCCAGCGGTGTGAGGGCTCAGTCCCCTGTCCCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGCTCTGCCCAGCGGTGTGAGGGCTCAGTCCCCTGTCCCCAGGG  350

seq1  TCCCAGCATTGTCACAGAAAGAATTC  376
      ||||||||||||||||||||||||||
seq2  TCCCAGCATTGTCACAGAAAGAATTC  376