BAC Information

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BAC

Clone NameB6Ng01-157P15
Chromosome5 (Build37)
Map Location 123,579,558 - 123,714,056
singlet/doubletdoublet
Overlap geneRhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824
Upstream geneCcdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593
Downstream geneBcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157P15.bB6Ng01-157P15.g
ACCDH952059DH952060
length1,123875
definitionDH952059|Mus musculus domesticus DNA, BAC clone: B6Ng01-157P15, 5' end.DH952060|Mus musculus domesticus DNA, BAC clone: B6Ng01-157P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,712,915 - 123,714,056)(123,579,558 - 123,580,433)
sequence
gaattccgtgaggatggggctagattagtgttgttcacggccacagacag
atctgaagccagcacaggttgcgaaccaacaaccgaggccagtcctcgtg
gtgaactggcatggctaggctcttgtgggttatgccgcacccatctgagt
tgtgtgcccactccagccagcttcctctgtggttcccgaacttggtgatc
tcatcttaacccagtcaacaggacttgctcactgcttttatcagaaaaga
aattccttaggtcgcatcaccggtaccaacgatgagtactacctagtctc
ttgggacatagttggggttccttttgatcctggcactgactgaggaagat
cctgtaacatcacacattcgtgaaacggctacgcagaatgaataaccacg
tcggcagtggatagcggacaccagagacgggacatgtaggcagggaatcc
tgacactgacccgtcagggatgcaagaagccagaggtgtaaggaaggcag
gcctagaggatgtgcacaaggagagggggtgaaacagtaagaaacactgc
agaagcaagggaagaacaggaggagctctggcctcctgagtacttctagg
tcctgagacctagactgcatagcactaataacaattatgatgttattttg
ttatataatatttatataatatatataattatattattagcccagtttgg
gctagtcactgtgacactctgagcctcagtgtcctcttctgtcatgtgtg
tatacgaacacctaccttccaagcacagtaatgagaaactgagtctaagt
ggctgggggtctgagtccccaggaacaggtgccctccataacctctgtgg
ggacatattctatgcatttagttgttttaagaaatctaagctgggcagtg
gtggtgcatgcctttaatttcagcactcagaaggcagaggcaggcggatt
gctgagttcaaggccagcctggtctacagagtgagttccaggatagctag
gctacagaggacgctgtctcaaactaacaacaacaaaatctaacattagt
ggtttaagaaatgccaaatgcaatgttctaactcttgaacggacaagtta
gcatcaactatgtttcccctggg
gaattcatttattccacagaatcttctagagcctcctccggacaaaccct
gtgcacacacgagaggaatgacccagcctcacaagcacactgctctctgg
ccagggaatttcctcctgccattagaatttccctagtcaccgagggacat
tcttgagggcccatctagattctccatcagaaaagtgtgtgtggcccgtc
tagatttcctgcagaaagagatggggccagagccatgtgtggtggtgcat
acctcaggaggctgaggtagcatcagagggcagggtgggctactcaggat
gttttgaggctaggaagaggaacagagaccctgtctcagacagacagact
cactcagatggagggcctggggatgtagctcagggtagaccttagttatg
cataagagcctgatttccagccctagcacaaaacaaagaagtctaaagaa
cggtatatgctgagcagcccaagagccagtccctgcgctgctgtgtgtat
ggaatttgatttaattcccttgactcttagctctgaggaaagatgaaaat
gaggctcagaagccttcagtggcacaaccagtgaactcaagtcagagtct
ctctcggtctgtttccacacacgaagcagaaagtcatagacaagatcatt
acaccaagcaatcctcacaacctcctgatgacggccactgggctctccct
ccatctctccacagcctcctgggacaaactcatccttccacctggtagca
gctctctgagccctcaccctcacaggacaccgctgcccaacatgtctact
gagcatctttttttgttccagaaatgcccaaaatggtctctgctctggtc
tggtgctggggggtaggtggggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123712915_123714056
seq2: B6Ng01-157P15.b_48_1170 (reverse)

seq1  CCCAGGGGGAAACACTAGTTGATGCTAACTTTGTCGTTTCAAGAGTTAGA  50
      |||| ||||||||| |||||||||||||| |||||  |||||||||||| 
seq2  CCCA-GGGGAAACA-TAGTTGATGCTAAC-TTGTCCGTTCAAGAGTTAG-  46

seq1  AACATCTGCATTTTGTGCATTTCTTAAAACAACTAAATGTTAGATTTTTG  100
      ||||| |||||||   ||||||||| |||| ||| |||||||||      
seq2  AACAT-TGCATTT--GGCATTTCTT-AAACCACT-AATGTTAGA------  85

seq1  TTTTGTTTTGTTTTGTTTTGGAGACAGCGGTTCTCTGTAGCCCTGGCTAT  150
      ||||||| |  || ||||  |||||||| || |||||||| ||| |||||
seq2  TTTTGTTGTTGTTAGTTT--GAGACAGC-GTCCTCTGTAG-CCTAGCTAT  131

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGCAATCCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGCAATCCGCC  181

seq1  TGCCTCTGCCTCCTGAGTGCTGGAATTAAAGGCATGCACCACCACTGCCC  250
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TGCCTCTGCCTTCTGAGTGCTGAAATTAAAGGCATGCACCACCACTGCCC  231

seq1  AGCTTAGATTTCTTAAAACAACTAAATGCATAGAATATGTCCCCACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGATTTCTTAAAACAACTAAATGCATAGAATATGTCCCCACAGAG  281

seq1  GTTATGGAGGGCACCTGTTCCTGGGGACTCAGACCCCCAGCCACTTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGAGGGCACCTGTTCCTGGGGACTCAGACCCCCAGCCACTTAGAC  331

seq1  TCAGTTTCTCATTACTGTGCTTGGAAGGTAGGTGTTCGTATACACACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCTCATTACTGTGCTTGGAAGGTAGGTGTTCGTATACACACATG  381

seq1  ACAGAAGAGGACACTGAGGCTCAGAGTGTCACAGTGACTAGCCCAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAGGACACTGAGGCTCAGAGTGTCACAGTGACTAGCCCAAACTG  431

seq1  GGCTAATAATATAATTATATATATTATATAAATATTATATAACAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATAATATAATTATATATATTATATAAATATTATATAACAAAATAA  481

seq1  CATCATAATTGTTATTAGTGCTATGCAGTCTAGGTCTCAGGACCTAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAATTGTTATTAGTGCTATGCAGTCTAGGTCTCAGGACCTAGAAG  531

seq1  TACTCAGGAGGCCAGAGCTCCTCCTGTTCTTCCCTTGCTTCTGCAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGGAGGCCAGAGCTCCTCCTGTTCTTCCCTTGCTTCTGCAGTGTT  581

seq1  TCTTACTGTTTCACCCCCTCTCCTTGTGCACATCCTCTAGGCCTGCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGTTTCACCCCCTCTCCTTGTGCACATCCTCTAGGCCTGCCTTC  631

seq1  CTTACACCTCTGGCTTCTTGCATCCCTGACGGGTCAGTGTCAGGATTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACCTCTGGCTTCTTGCATCCCTGACGGGTCAGTGTCAGGATTCCC  681

seq1  TGCCTACATGTCCCGTCTCTGGTGTCCGCTATCCACTGCCGACGTGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACATGTCCCGTCTCTGGTGTCCGCTATCCACTGCCGACGTGGTTA  731

seq1  TTCATTCTGCGTAGCCGTTTCACGAATGTGTGATGTTACAGGATCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTGCGTAGCCGTTTCACGAATGTGTGATGTTACAGGATCTTCCT  781

seq1  CAGTCAGTGCCAGGATCAAAAGGAACCCCAACTATGTCCCAAGAGACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGCCAGGATCAAAAGGAACCCCAACTATGTCCCAAGAGACTAG  831

seq1  GTAGTACTCATCGTTGGTACCGGTGATGCGACCTAAGGAATTTCTTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACTCATCGTTGGTACCGGTGATGCGACCTAAGGAATTTCTTTTCT  881

seq1  GATAAAAGCAGTGAGCAAGTCCTGTTGACTGGGTTAAGATGAGATCACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGCAGTGAGCAAGTCCTGTTGACTGGGTTAAGATGAGATCACCA  931

seq1  AGTTCGGGAACCACAGAGGAAGCTGGCTGGAGTGGGCACACAACTCAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGGGAACCACAGAGGAAGCTGGCTGGAGTGGGCACACAACTCAGAT  981

seq1  GGGTGCGGCATAACCCACAAGAGCCTAGCCATGCCAGTTCACCACGAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCGGCATAACCCACAAGAGCCTAGCCATGCCAGTTCACCACGAGGA  1031

seq1  CTGGCCTCGGTTGTTGGTTCGCAACCTGTGCTGGCTTCAGATCTGTCTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCGGTTGTTGGTTCGCAACCTGTGCTGGCTTCAGATCTGTCTGT  1081

seq1  GGCCGTGAACAACACTAATCTAGCCCCATCCTCACGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTGAACAACACTAATCTAGCCCCATCCTCACGGAATTC  1123

seq1: chr5_123579558_123580433
seq2: B6Ng01-157P15.g_68_942

seq1  GAATTCATTTATTCCACAGAATCTTCTAGAGCCTCCTCCGGACAAACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATTCCACAGAATCTTCTAGAGCCTCCTCCGGACAAACCCT  50

seq1  GTGCACACACGAGAGGAATGACCCAGCCTCACAAGCACACTGCTCTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACACGAGAGGAATGACCCAGCCTCACAAGCACACTGCTCTCTGG  100

seq1  CCAGGGAATTTCCTCCTGCCATTAGAATTTCCCTAGTCACCGAGGGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAATTTCCTCCTGCCATTAGAATTTCCCTAGTCACCGAGGGACAT  150

seq1  TCTTGAGGGCCCATCTAGATTCTCCATCAGAAAAGTGTGTGTGGCCCGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGGCCCATCTAGATTCTCCATCAGAAAAGTGTGTGTGGCCCGTC  200

seq1  TAGATTTCCTGCAGAAAGAGATGGGGCCAGAGCCATGTGTGGTGGTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCCTGCAGAAAGAGATGGGGCCAGAGCCATGTGTGGTGGTGCAT  250

seq1  ACCTCAGGAGGCTGAGGTAGCATCAGAGGGCAGGGTGGGCTACTCAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGAGGCTGAGGTAGCATCAGAGGGCAGGGTGGGCTACTCAGGAT  300

seq1  GTTTTGAGGCTAGGAAGAGGAACAGAGACCCTGTCTCAGACAGACAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGGCTAGGAAGAGGAACAGAGACCCTGTCTCAGACAGACAGACT  350

seq1  CACTCAGATGGAGGGCCTGGGGATGTAGCTCAGGGTAGACCTTAGTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGATGGAGGGCCTGGGGATGTAGCTCAGGGTAGACCTTAGTTATG  400

seq1  CATAAGAGCCTGATTTCCAGCCCTAGCACAAAACAAAGAAGTCTAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGCCTGATTTCCAGCCCTAGCACAAAACAAAGAAGTCTAAAGAA  450

seq1  CGGTATATGCTGAGCAGCCCAAGAGCCAGTCCCTGCGCTGCTGTGTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTATATGCTGAGCAGCCCAAGAGCCAGTCCCTGCGCTGCTGTGTGTAT  500

seq1  GGAATTTGATTTAATTCCCTTGACTCTTAGCTCTGAGGAAAGATGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGATTTAATTCCCTTGACTCTTAGCTCTGAGGAAAGATGAAAAT  550

seq1  GAGGCTCAGAAGCCTTCAGTGGCACAACCAGTGAACTCAAGTCAGAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGAAGCCTTCAGTGGCACAACCAGTGAACTCAAGTCAGAGTCT  600

seq1  CTCTCGGTCTGTTTCCACACACGAAGCAGAAAGTCATAGACAAGATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGTCTGTTTCCACACACGAAGCAGAAAGTCATAGACAAGATCATT  650

seq1  ACACCAAGCAATCCTCACAACCTCCTGATGACGGCCACTGGGCTCTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGCAATCCTCACAACCTCCTGATGACGGCCACTGGGCTCTCCCT  700

seq1  CCATCTCTCCACAGCCTCCTGGGACAAACTCATCCTTCCACCTGGTAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCACAGCCTCCTGGGACAAACTCATCCTTCCACCTGGTAGCA  750

seq1  GCTCTCTGAGCCCTCACCCTCACAGGACACCGCTGCCCAACATGTCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGAGCCCTCACCCTCACAGGACACCGCTGCCCAACATGTCTACT  800

seq1  GAGCATCTTTTTTTGTTCCAAGAAATGCCCAAAATGGTCTCTGCTCTGGT  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGCATCTTTTTTTGTTCC-AGAAATGCCCAAAATGGTCTCTGCTCTGGT  849

seq1  CTGGTGCTGGGGGGTAGGTGGGGTGC  876
      ||||||||||||||||||||||||||
seq2  CTGGTGCTGGGGGGTAGGTGGGGTGC  875