BAC Information

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BAC

Clone NameB6Ng01-158O10
Chromosome5 (Build37)
Map Location 71,552,060 - 71,553,256
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2
Downstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158O10.bB6Ng01-158O10.g
ACCDH952723DH952724
length1,1761,241
definitionDH952723|Mus musculus domesticus DNA, BAC clone: B6Ng01-158O10, 5' end.DH952724|Mus musculus domesticus DNA, BAC clone: B6Ng01-158O10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tgtttacagaataaacattacgtccatattgtaaaacagcaccagtggct
gggaataaagaccgatggtacgtacctgcgtagcatgcgtgaggccagaa
gatcaatcgccagcaccacagaaataacctcggaaaaatcatgttttaca
gcaatacattttttccatatgtaaaagcccagatagaacgcatcccagcc
atcatttggctagattttagctgtgctactatccaattttgtctaatata
cattctagtggaaataatggtattttcatttgtgtgtgacaaattctaga
agtgtagtttttaagataatgtattattttaaggctcattgctataattt
tcccaagttattcagcatacagtttgggttatttaagattataaatattt
tgctatcataagtcattttgagatttttatatataataaataaggtggca
tttccttgttctacttttcatttttagctaccaatggtcaatacatttca
tggtgtttattagcccttgaatttcctttaaaaaaattaagttttctctt
tctttgctcattgttttattgtttcatactgattaataaaaaattatgtg
taagcaggaatgtgatctactactttgtaccccatctcattcatttatta
ctacatatttcattttcttattttattctatatagtatgcttttcaaata
tatgtaaattttaatactctttgctctcaactttgttcttgacttttatt
ttagttgttctcatgtatgcactcttcttctgcatcctgaatagacacat
tcttccaaatatttctattgttcattgtttccttttttatgaattagagc
atgcagattcctggagctcaagtcgtcagtatctttatccacagaactgg
aaaatctggtatttacatgactatctaagggaatttacatatttggataa
agacatgatagagtgatctcagatttaaggaaatagctctcgtattttta
gatggatgcaggcataggtcaggagaaggatgtcagctaggtatagggtt
tcaggctgtatggaaacatttggggagtcagaggcagatggctgcatatt
aggcactctgggaactggtatggtctagacagctttgtttagggagattt
tttttttcagtgccaaaatagagaag
gaattctctgtttatctctgtactccatttttaattgagttatttggttt
gttgatgtcaaattaattatttatttatatattttcaatattaatccttt
gtcagatgtagggtggatgaatatcttctgtaggctgctgttctgtccta
ttgatagtgtccttatcttagcaaaaactttttagtttcatgaggtccta
tttattaattcttcaccttagtgcctgagccattggtgttctgttcagga
atttgtctcctctgtcaatgtattcagggttgttccccactttctcttct
attagatttagtgtgtctgggtttacgttgaggtctatgattgacttgga
cttgagttttgtgtaaggcaatagatattgccttatttgcattcttctat
atgcagacctccagttagaccaggaccattcgttgaacatgttttaatct
tcccattgtatggtttaggcttctacatcaaatatcatgtgtctataagt
atgtgagtttatttctggctattagattatattccattaatcaacctgtc
tgtctttatgccaatactatgctatttgtattactattgttttatagtac
agcttgaaatcagggatggtgatacctccagaagttcttttgttttactg
ggtttctaactggattaaactgctttggatgacttaactttaagtctgtg
cactaagaactactttaccacagtgatagacatccactgcatatgcaaaa
ttgggctaagctgcagaattgtgtttatatttccaaaaattatttttgaa
attttaaactaatatattttcataaaataatgacgagaaaaggagattgt
taggtaattcgatgttttctataccaaaccttaatcatccagatatctgg
agtattagttcctttttatgtggctgtgacacaattctgataaatgctaa
tgaggaggaggagttaattttatttcattgtttgaggttacaacatcacc
cgggagttctagcatggtaaagaattctagggcaatgtccagtattgtca
gggctaagaagcctgggaactggtactcagctgttttgctttttagggcg
aggaatccaccagggtcctgatagcggtacaatatatagacatccgggac
aatcatagccatttctctggtgccagctaatctccgcccttcctatttcg
agatatgcgtaatcgacacataccttgagccagtcatattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71552060_71553256
seq2: B6Ng01-158O10.b_53_1228

seq1  TGTTTACAGAATAAACATTA-GTCCATATTGTAAAACAGCACCAGTGGCT  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTTTACAGAATAAACATTACGTCCATATTGTAAAACAGCACCAGTGGCT  50

seq1  GGGAATAAAGACCGATGGTACGTACCTGCGTAGCATGCGTGAGGCCAGAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAAAGACCGATGGTACGTACCTGCGTAGCATGCGTGAGGCCAGAA  100

seq1  GATCAATCGCCAGCACCACAGAAATAACCTCGGAAAAATCATGTTTTACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATCGCCAGCACCACAGAAATAACCTCGGAAAAATCATGTTTTACA  150

seq1  GCAATACATTTTTTCCATATGTAAAAGCCCAGATAGAACGCATCCCAGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACATTTTTTCCATATGTAAAAGCCCAGATAGAACGCATCCCAGCC  200

seq1  ATCATTTGGCTAGATTTTAGCTGTGCTACTATCCAATTTTGTCTAATATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGGCTAGATTTTAGCTGTGCTACTATCCAATTTTGTCTAATATA  250

seq1  CATTCTAGTGGAAATAATGGTATTTTCATTTGTGTGTGACAAATTCTAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGTGGAAATAATGGTATTTTCATTTGTGTGTGACAAATTCTAGA  300

seq1  AGTGTAGTTTTTAAGATAATGTATTATTTTAAGGCTCATTGCTATAATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTTTTTAAGATAATGTATTATTTTAAGGCTCATTGCTATAATTT  350

seq1  TCCCAAGTTATTCAGCATACAGTTTGGGTTATTTAAGATTATAAATATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTTATTCAGCATACAGTTTGGGTTATTTAAGATTATAAATATTT  400

seq1  TGCTATCATAAGTCATTTTGAGATTTTTATATATAATAAATAAGGTGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCATAAGTCATTTTGAGATTTTTATATATAATAAATAAGGTGGCA  450

seq1  TTTCCTTGTTCTACTTTTCATTTTTAGCTACCAATGGTCAATACATTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTTCTACTTTTCATTTTTAGCTACCAATGGTCAATACATTTCA  500

seq1  TGGTGTTTATTAGCCCTTGAATTTCCTTTAAAAAAATTAAGTTTTCTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTATTAGCCCTTGAATTTCCTTTAAAAAAATTAAGTTTTCTCTT  550

seq1  TCTTTGCTCATTGTTTTATTGTTTCATACTGATTAATAAAAAATTATGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTCATTGTTTTATTGTTTCATACTGATTAATAAAAAATTATGTG  600

seq1  TAAGCAGGAATGTGATCTACTACTTTGTACCCCATCTCATTCATTTATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGAATGTGATCTACTACTTTGTACCCCATCTCATTCATTTATTA  650

seq1  CTACATATTTCATTTTCTTATTTTATTCTATATAGTATGCTTTTCAAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATTTCATTTTCTTATTTTATTCTATATAGTATGCTTTTCAAATA  700

seq1  TATGTAAATTTTAATACTCTTTGCTCTCAACTTTGTTCTTGACTTTTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAATTTTAATACTCTTTGCTCTCAACTTTGTTCTTGACTTTTATT  750

seq1  TTAGTTGTTCTCATGTATGCACTCTTCTTCTGCATCCTGAAATAGACACA  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTAGTTGTTCTCATGTATGCACTCTTCTTCTGCATCCTG-AATAGACACA  799

seq1  TTCTTCCAAATATTTCTATTGTTCATTGTTTCCTTTTTTATGAATTAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAAATATTTCTATTGTTCATTGTTTCCTTTTTTATGAATTAGAG  849

seq1  CATGCAGACTCCTGGAGCCCAAGTCGTCAGTATCTTTATCCACAGAACTT  899
      |||||||| ||||||||| |||||||||||||||||||||||||||||| 
seq2  CATGCAGATTCCTGGAGCTCAAGTCGTCAGTATCTTTATCCACAGAACTG  899

seq1  GAAAATCTGGTATTTACATGACTATCTAAGGGAATTTACATATTTGAATA  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAAATCTGGTATTTACATGACTATCTAAGGGAATTTACATATTTGGATA  949

seq1  AAGACATGATAGAGTGATCTCAAGATTTAAGGAAATAGCTCTCGTATTTC  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  AAGACATGATAGAGTGATCTC-AGATTTAAGGAAATAGCTCTCGTATTT-  997

seq1  TAAGATGGATGCAGGCATAAGGTCAGGAGAAAGATGTCAGCTAGGTATAG  1049
      | |||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTAGATGGATGCAGGCAT-AGGTCAGGAGAAGGATGTCAGCTAGGTATAG  1046

seq1  TGTATCAGGCCTGTAATGGAAACATTT-GGGAGTCAGAGGCAAGATGGCT  1098
       || ||||| |||| |||||||||||| ||||||||||||| ||||||||
seq2  GGTTTCAGG-CTGT-ATGGAAACATTTGGGGAGTCAGAGGC-AGATGGCT  1093

seq1  GCCATAAATTTAAGGCCATCCTGGGATACTTGGTATGGTCTAGACCAGCT  1148
      ||     || | ||| ||  |||||| || |||||||||||||| |||||
seq2  GC-----ATATTAGG-CACTCTGGGA-AC-TGGTATGGTCTAGA-CAGCT  1134

seq1  TTTGTTAGAGTGAGATTTTTTTTTTCTCAATGCCAAAAAATAAGAGAAG  1197
      ||  ||  || |||||||||||||  ||| ||||||||    |||||||
seq2  TTGTTT--AGGGAGATTTTTTTTT--TCAGTGCCAAAA---TAGAGAAG  1176