BAC Information

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BAC

Clone NameB6Ng01-159B01
Chromosome5 (Build37)
Map Location 105,290,582 - 105,431,029
singlet/doubletdoublet
Overlap geneLOC100041216, Abcg3, LOC626471, EG545790
Upstream geneKlhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik
Downstream gene5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159B01.bB6Ng01-159B01.g
ACCDH952841DH952842
length1,130645
definitionDH952841|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B01, 5' end.DH952842|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,290,582 - 105,291,718)(105,430,386 - 105,431,029)
sequence
gaattcttcaccagcacatctctaagacaacacactcaaaggtaatgtca
aagttaattcaggatatttactgttgcttccatttacaaacatatagtta
aaacacatcatacgagtgtgagacaacacactcaaaggtaatgtcaaagt
taattcaggatatttactgttgcttccatttacaaacatatagttaaaac
atatcattaaacatttcttcttatttaattgatactagtcctcatatgat
tacaattttattatacattattacaatccatcaattgtcttgaatctggt
actttacttaatttaaaaaacaatccaattgtggatagctgcaacatcta
ctcaacagcatattggaagatgtcctaataagcttggcaggttctcagag
caacactgtgatccaactatgtagacacaacaatgccattcatttctaaa
tctataatgctgctctctacaaaggggaaaagtatggatcaagtattgct
actcctgtagaagaaaaccccggcttcctaatgacacagatgtttcaagg
tatcgcttctcggccttttggctaagatcaagtgcagatgtttcaaggag
ataaacgtggtgtcagcattttgcttactcagtagacactcatgtacaag
aacagaagcaatgaattctagacctggaaccagaggagaacaagaacttc
attcagccaggagacagtgaattcctgtctcctcctatacaaagtctgaa
gtgactgtagcttgtgtcaagttgacaataaggtacccagcataaatccc
acacaattataacttatgtattgcaccacccatacatagccccaggtcca
cagttgaattcctgtaagtgtaggatggttagagtttattcttttcgata
ctctccatgggcttcttttaaaacagaccatttaccagaaggggtctcat
tgtcatgcatctaaactgacctaggaagacaaaacactgcatgtcctctc
tgaacatatgtccttttgctgtagatttcaagtttgtaagaaatcgatag
cttttcagtctggtcatcaactcctgtggcacgtgcagaatgaagctcga
catttaaatggatgttggctgttttatttt
gaattccagtaacattgcacctttcattgtgcttgaactgccaaaaaact
ctccctctgtgttaaaaatttatctatgttctgccaagtctgataatgtg
acctgtttgggacttatgatgggaagagagaggtaaattctgcatgaatt
gtaattctactctgaactgcatagcacacctacacacaccacctggccca
gaacgaatagaaacctgtataaagtttttacttactgaatgtacagttag
agagctactcaaacacaagcagggttaggagcactgagattgaactctcc
tataaccagctttggacctcctatctctaatattaaggaagggtttgaat
gcctcctgctcccacatgtctgtttagaatttgaaataccatgagaactg
agggaaagtatcacagtttttcccccataagaacatcaaacaccagggca
gggagggaaggagcatcatgattaaccttacatatgatgaaattatctta
ggaaagggaggcatgtggaagggacgtgtggaggaggcaggtctggagtt
ggcaggtttgaaggaggcaggtgtggaagtggcaggtgtggaagtggcag
gtgtggaggaaacaggtatggagaaagacaggtgtggaggtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105290582_105291718
seq2: B6Ng01-159B01.b_46_1175

seq1  GAATTCTTCACCAGCACATCTCTAAGACAACACACTCAAAGGTAATGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACCAGCACATCTCTAAGACAACACACTCAAAGGTAATGTCA  50

seq1  AAGTTAATTCAGGATATTTACTGTTGCTTCCATTTACAAACATATAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATTCAGGATATTTACTGTTGCTTCCATTTACAAACATATAGTTA  100

seq1  AAACACATCATACGAGTGTGAGACAACACACTCAAAGGTAATGTCAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATCATACGAGTGTGAGACAACACACTCAAAGGTAATGTCAAAGT  150

seq1  TAATTCAGGATATTTACTGTTGCTTCCATTTACAAACATATAGTTAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGGATATTTACTGTTGCTTCCATTTACAAACATATAGTTAAAAC  200

seq1  ATATCATTAAACATTTCTTCTTATTTAATTGATACTAGTCCTCATATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTAAACATTTCTTCTTATTTAATTGATACTAGTCCTCATATGAT  250

seq1  TACAATTTTATTATACATTATTACAATCCATCAATTGTCTTGAATCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTTATTATACATTATTACAATCCATCAATTGTCTTGAATCTGGT  300

seq1  ACTTTACTTAATTTAAAAAACAATCCAATTGTGGATAGCTGCAACATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTTAATTTAAAAAACAATCCAATTGTGGATAGCTGCAACATCTA  350

seq1  CTCAACAGCATATTGGAAGATGTCCTAATAAGCTTGGCAGGTTCTCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGCATATTGGAAGATGTCCTAATAAGCTTGGCAGGTTCTCAGAG  400

seq1  CAACACTGTGATCCAACTATGTAGACACAACAATGCCATTCATTTCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGTGATCCAACTATGTAGACACAACAATGCCATTCATTTCTAAA  450

seq1  TCTATAATGCTGCTCTCTACAAAGGGGAAAAGTATGGATCAAGTATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATGCTGCTCTCTACAAAGGGGAAAAGTATGGATCAAGTATTGCT  500

seq1  ACTCCTGTAGAAGAAAACCCCGGCTTCCTAATGACACAGATGTTTCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTAGAAGAAAACCCCGGCTTCCTAATGACACAGATGTTTCAAGG  550

seq1  TATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGCAGATGTTTCAAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGCAGATGTTTCAAGGAG  600

seq1  ATAAACGTGGTGTCAGCATTTTGCTTACTCAGTAGACACTCATGTACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGTGGTGTCAGCATTTTGCTTACTCAGTAGACACTCATGTACAAG  650

seq1  AACAGAAGCAATGAATTCTAGACCTGGAACCAGAGGAGAACAAGAACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGCAATGAATTCTAGACCTGGAACCAGAGGAGAACAAGAACTTC  700

seq1  ATTCAGCCAGGAGACAGTGAATTCCTGTCTCCTCCTATACAAAGTCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCCAGGAGACAGTGAATTCCTGTCTCCTCCTATACAAAGTCTGAA  750

seq1  GTGACTGTAGCTTGTGTCAAGTTGACAATAAGGTACCCAGCATAAATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTAGCTTGTGTCAAGTTGACAATAAGGTACCCAGCATAAATCCC  800

seq1  ACACAATTATAACTTATGTATTGCACCACCCATACATAGCCCCAGGTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTATAACTTATGTATTGCACCACCCATACATAGCCCCAGGTCCA  850

seq1  CAGTTGAATTCCTGTAAAGTGTAGGATGGTTAGAGTTTATTC-TCTCGAT  899
      ||||||||||||||| |||||||||||||||||||||||||| | |||||
seq2  CAGTTGAATTCCTGT-AAGTGTAGGATGGTTAGAGTTTATTCTTTTCGAT  899

seq1  ACTCTCCATGGCCT--CTCTAAAACAGACCATTTACCAG-AGGGGTCTCA  946
      ||||||||||| ||   | |||||||||||||||||||| ||||||||||
seq2  ACTCTCCATGGGCTTCTTTTAAAACAGACCATTTACCAGAAGGGGTCTCA  949

seq1  TTGTCATGCATCTTAACTGACCTAGGAAGACAAAACACTGCATGTCCTCT  996
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGCATCTAAACTGACCTAGGAAGACAAAACACTGCATGTCCTCT  999

seq1  CTGAACATTATGTCCTTTTTGCTGTAGATTTCAAGGTTTGTTAGAAATAC  1046
      ||||||| ||||||| |||||||||||||||||| |||||| |||||| |
seq2  CTGAACA-TATGTCC-TTTTGCTGTAGATTTCAA-GTTTGTAAGAAAT-C  1045

seq1  GATAGCTTTTCCAGTCTTGTCACTCAAACTCTGTGCAACGTGCAG-ATGA  1095
      |||||||||| |||||| |||| ||||   |||||  |||||||| ||||
seq2  GATAGCTTTT-CAGTCTGGTCA-TCAACTCCTGTGGCACGTGCAGAATGA  1093

seq1  AGCTCAGACATTTTAAAATGGATGTTGGGCTGTTTTTATTTT  1137
      ||||| |||||||  ||||||||||| ||||| |||||||||
seq2  AGCTC-GACATTT--AAATGGATGTT-GGCTG-TTTTATTTT  1130

seq1: chr5_105430386_105431029
seq2: B6Ng01-159B01.g_67_711 (reverse)

seq1  TACCACCTCCACACCTGTC-TTCTCCATACCTGTTTCCTCCACACCTGCC  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACCACCTCCACACCTGTCTTTCTCCATACCTGTTTCCTCCACACCTGCC  50

seq1  ACTTCCACACCTGCCACTTCCACACCTGCCTCCTTCAAACCTGCCAACTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACACCTGCCACTTCCACACCTGCCTCCTTCAAACCTGCCAACTC  100

seq1  CAGACCTGCCTCCTCCACACGTCCCTTCCACATGCCTCCCTTTCCTAAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGCCTCCTCCACACGTCCCTTCCACATGCCTCCCTTTCCTAAGA  150

seq1  TAATTTCATCATATGTAAGGTTAATCATGATGCTCCTTCCCTCCCTGCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATCATATGTAAGGTTAATCATGATGCTCCTTCCCTCCCTGCCC  200

seq1  TGGTGTTTGATGTTCTTATGGGGGAAAAACTGTGATACTTTCCCTCAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTGATGTTCTTATGGGGGAAAAACTGTGATACTTTCCCTCAGTT  250

seq1  CTCATGGTATTTCAAATTCTAAACAGACATGTGGGAGCAGGAGGCATTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTATTTCAAATTCTAAACAGACATGTGGGAGCAGGAGGCATTCA  300

seq1  AACCCTTCCTTAATATTAGAGATAGGAGGTCCAAAGCTGGTTATAGGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCCTTAATATTAGAGATAGGAGGTCCAAAGCTGGTTATAGGAGA  350

seq1  GTTCAATCTCAGTGCTCCTAACCCTGCTTGTGTTTGAGTAGCTCTCTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATCTCAGTGCTCCTAACCCTGCTTGTGTTTGAGTAGCTCTCTAAC  400

seq1  TGTACATTCAGTAAGTAAAAACTTTATACAGGTTTCTATTCGTTCTGGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTCAGTAAGTAAAAACTTTATACAGGTTTCTATTCGTTCTGGGC  450

seq1  CAGGTGGTGTGTGTAGGTGTGCTATGCAGTTCAGAGTAGAATTACAATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTGTGTGTAGGTGTGCTATGCAGTTCAGAGTAGAATTACAATTC  500

seq1  ATGCAGAATTTACCTCTCTCTTCCCATCATAAGTCCCAAACAGGTCACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAATTTACCTCTCTCTTCCCATCATAAGTCCCAAACAGGTCACAT  550

seq1  TATCAGACTTGGCAGAACATAGATAAATTTTTAACACAGAGGGAGAGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACTTGGCAGAACATAGATAAATTTTTAACACAGAGGGAGAGTTT  600

seq1  TTTGGCAGTTCAAGCACAATGAAAGGTGCAATGTTACTGGAATTC  644
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAGTTCAAGCACAATGAAAGGTGCAATGTTACTGGAATTC  645