BAC Information

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BAC

Clone NameB6Ng01-159E15
Chromosome5 (Build37)
Map Location 49,418,705 - 49,552,693
singlet/doubletdoublet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159E15.bB6Ng01-159E15.g
ACCDH952995DH952996
length1,112927
definitionDH952995|Mus musculus domesticus DNA, BAC clone: B6Ng01-159E15, 5' end.DH952996|Mus musculus domesticus DNA, BAC clone: B6Ng01-159E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,551,574 - 49,552,693)(49,418,705 - 49,419,606)
sequence
gaattccaaattgtctaaatatgttccactacaaataccaagacaaaaat
ttggcgattaaatttctaacacctgaaccattggggaatcacaatctatt
catattacatttcattctttgatttttaaaagacccatcataagaaaact
tcattcagaacatacagaccaaacaaagtaaataactcttccacagagag
atgatggactgacttaagatgcatcaaaatacccaattatgaccaaagtc
agtgcttactgataatgttctgtgtaaaactttgtgacccagtctgcgat
gtaagcattttaaatgtttgtgcacacgtaataagtactatttactacct
cattctcctgtggagttgaaacgctttcacaacacttgtttgttacaggt
atggcagtttgaagtctgaaatcaaaatattggcaagaactctatatctt
tgaagattttcgggggaagtctatcttttctgtttctgttggatgctcat
tgtgctggtttgaaggcgaatagcccttattgtctcatatatttgactgt
tagatcccagttagtggaactgtatgagaggaattaggagatgtggcttt
gttgaaatagttctggctttattgaaggagatctatcatcttgaaggaag
tatgtcactgatggcaggctttgagtttttaaaaggtcattctatacatt
tctgtccttatctctgttgctttaaagctaagtttagaacaaataatctc
taacaagatcctgtatttggaaaaagcatcagttgaatgaattattcttt
cagtttggctgagacattccaaaagacttcctcattgcaaatgagaagtt
gtgatcaacttgttattagctgaatattgtttcatccgtttgtcaagtat
tcataatacttgcagtaaatgagaatctacagatttgaattatctatcag
aaatattcatttgaaatctcaagtatctcatgtaattacactaagcatcc
tttacttattttatcgctgctagtgatggctaatgcattgttcattatca
gaaacttgtttcatcatttaaaaaattgggtgctccaaatttatatctag
tctcagagaatg
gaattccatgccaaacacaaggaaggtttcgtgtaaacatttgttgagtg
acagaataaataagcaactgctttgttaatttaggttaaaaaaaaaaaaa
aacaaaaccaaaaaacaaatcagagatgagcttcaaccccatgagtccct
gttgtgaactcttcccatctctgctctcaattcacagctcatcctcatcg
actcatgagatttttttcattgcctctttgtttttaagccagtggtacta
tattttcataaatccatagggaaggaacatgccctttgtttgaatgtatg
gcatccagcatttgagtcatgggagttttctatcactaggactaaaggat
gtacatactatcggctatatgtgttttacactgtaccaccggtcagtaca
gttccctggaatgaagctgtgactgtaaagagtcactaagtagaactgca
gagatgaggagaggttggactgttgcagatcatgaggctaattaccttat
gtgagctggctttagccccttgactagccagatagtctttgcctgactct
gttttggacatcttatgactaatggataaaatggacctattttattaagt
gggcagactactagtcttcaccaaaccaaaatttaagcatgtcaccaatt
gccatctgaggcccatagaaggctcttgctggaaccaactgacttttttt
tttccagtttttcgagacagggtttctctgtgtagctctggctgtcctgg
aactcactctatagaccaagctggcctcaaactcagaaatctgcctgcct
ctgcctccaagtgctgggattaaaggtgagtgccaccactgcccggccag
gattgactttcaagtgtacttagcagtatattttgaaattgtttgattta
tgaagtttctttgtttataaactatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49551574_49552693
seq2: B6Ng01-159E15.b_49_1160 (reverse)

seq1  CATTCTCTGAGACTAGAATAATAAATTTGGAGCACACAATTTTTTAAATG  50
      |||||||||||||||||   ||||||||||||||| ||||||||||||||
seq2  CATTCTCTGAGACTAGA--TATAAATTTGGAGCACCCAATTTTTTAAATG  48

seq1  ATGAAACAAGTTTTCTGATTAATGAACAATGCAATAGCCATCACATAGCA  100
      |||||||||| ||||||| |||||||||||||| |||||||||| |||| 
seq2  ATGAAACAAG-TTTCTGA-TAATGAACAATGCATTAGCCATCAC-TAGC-  94

seq1  AGCGATAAAAATAAGTAAAGGATTGCTTAGTGTTAATTACATGAGATACT  150
      |||||| ||||||||||||||| ||||||||| |||||||||||||||||
seq2  AGCGAT-AAAATAAGTAAAGGA-TGCTTAGTG-TAATTACATGAGATACT  141

seq1  TGAGATTT-GAATGAATATTTCTGATAGATAATTCAAATCTGTAGATTCT  199
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTCAAATGAATATTTCTGATAGATAATTCAAATCTGTAGATTCT  191

seq1  CATTTACTGCAAGTATTATGAATACTTGACAAACGGATGAAACAATATTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTGCAAGTATTATGAATACTTGACAAACGGATGAAACAATATTC  241

seq1  AGCTAATAACAAGTTGATCACAACTTCTCATTTGCAATGAGGAAGTCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATAACAAGTTGATCACAACTTCTCATTTGCAATGAGGAAGTCTTT  291

seq1  TGGAATGTCTCAGCCAAACTGAAAGAATAATTCATTCAACTGATGCTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTCTCAGCCAAACTGAAAGAATAATTCATTCAACTGATGCTTTT  341

seq1  TCCAAATACAGGATCTTGTTAGAGATTATTTGTTCTAAACTTAGCTTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATACAGGATCTTGTTAGAGATTATTTGTTCTAAACTTAGCTTTAA  391

seq1  AGCAACAGAGATAAGGACAGAAATGTATAGAATGACCTTTTAAAAACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGAGATAAGGACAGAAATGTATAGAATGACCTTTTAAAAACTCA  441

seq1  AAGCCTGCCATCAGTGACATACTTCCTTCAAGATGATAGATCTCCTTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCCATCAGTGACATACTTCCTTCAAGATGATAGATCTCCTTCAA  491

seq1  TAAAGCCAGAACTATTTCAACAAAGCCACATCTCCTAATTCCTCTCATAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAGAACTATTTCAACAAAGCCACATCTCCTAATTCCTCTCATAC  541

seq1  AGTTCCACTAACTGGGATCTAACAGTCAAATATATGAGACAATAAGGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACTAACTGGGATCTAACAGTCAAATATATGAGACAATAAGGGCT  591

seq1  ATTCGCCTTCAAACCAGCACAATGAGCATCCAACAGAAACAGAAAAGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCCTTCAAACCAGCACAATGAGCATCCAACAGAAACAGAAAAGATA  641

seq1  GACTTCCCCCGAAAATCTTCAAAGATATAGAGTTCTTGCCAATATTTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCCCCGAAAATCTTCAAAGATATAGAGTTCTTGCCAATATTTTGA  691

seq1  TTTCAGACTTCAAACTGCCATACCTGTAACAAACAAGTGTTGTGAAAGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTTCAAACTGCCATACCTGTAACAAACAAGTGTTGTGAAAGCG  741

seq1  TTTCAACTCCACAGGAGAATGAGGTAGTAAATAGTACTTATTACGTGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTCCACAGGAGAATGAGGTAGTAAATAGTACTTATTACGTGTGC  791

seq1  ACAAACATTTAAAATGCTTACATCGCAGACTGGGTCACAAAGTTTTACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATTTAAAATGCTTACATCGCAGACTGGGTCACAAAGTTTTACAC  841

seq1  AGAACATTATCAGTAAGCACTGACTTTGGTCATAATTGGGTATTTTGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTATCAGTAAGCACTGACTTTGGTCATAATTGGGTATTTTGATG  891

seq1  CATCTTAAGTCAGTCCATCATCTCTCTGTGGAAGAGTTATTTACTTTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAAGTCAGTCCATCATCTCTCTGTGGAAGAGTTATTTACTTTGTT  941

seq1  TGGTCTGTATGTTCTGAATGAAGTTTTCTTATGATGGGTCTTTTAAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTATGTTCTGAATGAAGTTTTCTTATGATGGGTCTTTTAAAAAT  991

seq1  CAAAGAATGAAATGTAATATGAATAGATTGTGATTCCCCAATGGTTCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATGAAATGTAATATGAATAGATTGTGATTCCCCAATGGTTCAGG  1041

seq1  TGTTAGAAATTTAATCGCCAAATTTTTGTCTTGGTATTTGTAGTGGAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAATTTAATCGCCAAATTTTTGTCTTGGTATTTGTAGTGGAACA  1091

seq1  TATTTAGACAATTTGGAATTC  1120
      |||||||||||||||||||||
seq2  TATTTAGACAATTTGGAATTC  1112

seq1: chr5_49418705_49419606
seq2: B6Ng01-159E15.g_66_965

seq1  GAATTCCATGCCAAACACAAGGAAGGTTTCGTGTAAACATTTGTTGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCAAACACAAGGAAGGTTTCGTGTAAACATTTGTTGAGTG  50

seq1  ACAGAATAAATAAGCAACTGCTTTGTTAATTTAGGTTAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAAATAAGCAACTGCTTTGTTAATTTAGGTTAAAAAAAAAAAAA  100

seq1  AACAAAACCAAAAAACAAATCAGAGATGAGCTTCAACCCCATGAGTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACCAAAAAACAAATCAGAGATGAGCTTCAACCCCATGAGTCCCT  150

seq1  GTTGTGAACTCTTCCCATCTCTGCTCTCAATTCACAGCTCATCCTCATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAACTCTTCCCATCTCTGCTCTCAATTCACAGCTCATCCTCATCG  200

seq1  ACTCATGAGATTTTTTTCATTGCCTCTTTGTTTTTAAGCCAGTGGTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAGATTTTTTTCATTGCCTCTTTGTTTTTAAGCCAGTGGTACTA  250

seq1  TATTTTCATAAATCCATAGGGAAGGAACATGCCCTTTGTTTGAATGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATAAATCCATAGGGAAGGAACATGCCCTTTGTTTGAATGTATG  300

seq1  GCATCCAGCATTTGAGTCATGGGAGTTTTCTATCACTAGGACTAAAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAGCATTTGAGTCATGGGAGTTTTCTATCACTAGGACTAAAGGAT  350

seq1  GTACATACTATCGGCTATATGTGTTTTACACTGTACCACCGGTCAGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATACTATCGGCTATATGTGTTTTACACTGTACCACCGGTCAGTACA  400

seq1  GTTCCCTGGAATGAAGCTGTGACTGTAAAGAGTCACTAAGTAGAACTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGGAATGAAGCTGTGACTGTAAAGAGTCACTAAGTAGAACTGCA  450

seq1  GAGATGAGGAGAGGTTGGACTGTTGCAGATCATGAGGCTAATTACCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGGAGAGGTTGGACTGTTGCAGATCATGAGGCTAATTACCTTAT  500

seq1  GTGAGCTGGCTTTAGCCCCTTGACTAGCCAGATAGTCTTTGCCTGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGGCTTTAGCCCCTTGACTAGCCAGATAGTCTTTGCCTGACTCT  550

seq1  GTTTTGGACATCTTATGACTAATGGATAAAATGGACCTATTTTATTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGACATCTTATGACTAATGGATAAAATGGACCTATTTTATTAAGT  600

seq1  GGGCAGACTACTAGTCTTCACCAAACCAAAATTTAAGCATGTCACCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGACTACTAGTCTTCACCAAACCAAAATTTAAGCATGTCACCAATT  650

seq1  GCCATCTGAGGCCCATAGAAGGCTCTTGCTGGAACCAACTGACTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGAGGCCCATAGAAGGCTCTTGCTGGAACCAACTGACTTTTTTT  700

seq1  TTTCCAGTTTTTCGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTTTTTCGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGG  750

seq1  AACTCACTCTATAGACCAAGCTGGCCTCAAACTCAGAAATCTGCCTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCTATAGACCAAGCTGGCCTCAAACTCAGAAATCTGCCTGCCT  800

seq1  CTGCCTCCCAAGTGCTGGGATTAAAGGTGAGTGCCACCACTGCCCGGCCA  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCT-CCAAGTGCTGGGATTAAAGGTGAGTGCCACCACTGCCCGGCCA  849

seq1  GGAATTGACTTTCAAGTGTACTTAGCAGTATATTTTGAAATTGTTTGATT  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-ATTGACTTTCAAGTGTACTTAGCAGTATATTTTGAAATTGTTTGATT  898

seq1  TA  902
      ||
seq2  TA  900