BAC Information

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BAC

Clone NameB6Ng01-159N09
Chromosome5 (Build37)
Map Location 87,684,121 - 87,840,981
singlet/doubletdoublet
Overlap geneLOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38
Upstream geneTmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37
Downstream geneUgt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159N09.bB6Ng01-159N09.g
ACCDH953383DH953384
length9451,047
definitionDH953383|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N09, 5' end.DH953384|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,684,121 - 87,684,666)(87,839,924 - 87,840,981)
sequence
gaattctcctctatatggccttgaaagcttattaatttacatagttgaat
gtcatgatgactcttccctttcctttaatgtgaccaattattctgactaa
atcatggactgttctaataatcaatccaatattagaaataacagacttca
tttaaaaggctggttctagacagttttagagacatatttgaaagttagct
acagttttctatgatgatatgttaacaatagatggggacaggttatagca
aatattaaggttaggttagctactaaaggtcgtgcttcatttcaatatat
atgtgtcatgccattaacttataatgcaaccattaattggggaaagacta
aggctcatttgcagggagtgtggaaaaatacagatatttcacatattata
cagcaattaaagatagaaatttcagatattaacagaagtcctttggataa
atagaacattgagaaattagccagagatttaaaaaataatctatttgtat
taaatcccttagattgggttaagtatataatcttgcatgctattataatt
gacattattttattagtaatcattgtgtttccacttatctttagagttct
tctgagattgaggtgggacattctgaaacttcatctaaaagatataaagt
gggaaatgctatacacacaccagtgaagactgcatggcagccccaaaaac
ttcgatgagtcccaaggcagaaaagttttatggaaacttagggccctgga
gccttggcatcctgtaacacaaatgttccaacttgtccctgcattagttg
gtgaatggatctgtgtactttctttcagtattgttttattataggtacct
ctgagaaataatgtgtcaaatacctaagctagactgaactttgcttcctg
gccttcaccaatgtcctcggagtcctggagtcaaccctgggcttg
gaattcatcttcttctaggtcatccaaaaacaaaagcctttgtaactcat
ggtggggccaatggtgtctatgaggtgatctatcatggaatccctatgat
tggcattcctttgtttggagaacaacatgataatattgcccatatggtgg
ccaaaggagcagctgttacattgaatatcagaacaatgtcaagatcagat
gtactcaatgcactggaggaagtcatagacaatcctttgtgagtataaac
ttttaaaatgtggttcactcatttattcattattcatttattcattcatt
cacaaattcatacatttattgtcttcttactgaaagccaaacaaacaaga
attatcctgaaggtaatggtaataataggagcagagatacattagggcat
gattcagtacatatattattctctctcttactttttgttttctaattcct
tcttatgctttatatttctttcttattgtcctaaatatgtaacccttctg
cttcttcctccacactgcttggccaagaatgatcttgatagtcctgtcca
acacttcaaaagaaggctttcatatctgttgtgggactttttggtaggaa
gtccttggctattagaagaaggaatgtcagtttagatgagagaagttcat
taaaactatatatgtatgtttatgcatagaagagatgtaaggcataaata
gttaagaatataattattttttcagaattcttcttgttattttctccttt
tctctcctcttctcccccttgcctttcctctcttcccatttcccttatta
gatcacttaaattctgccatctaccttcacattcttcatgcctgttttgt
attaacctctcccccatccctaaggagcatctactcttcctcttcctcta
tcagatagttgatcctaagtgtacatgactgtcatagcatactaaaaatg
agttgtttatttatttttttatatttttattacatattcctcaattacat
ttccaatgctaatcccaaagtcccccataccctccccccctccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87684121_87684666
seq2: B6Ng01-159N09.b_48_593

seq1  GAATTCTCCTCTATATGGCCTTGAAAGCTTATTAATTTACATAGTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTATATGGCCTTGAAAGCTTATTAATTTACATAGTTGAAT  50

seq1  GTCATGATGACTCTTCCCTTTCCTTTAATGTGACCAATTATTCTGACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGATGACTCTTCCCTTTCCTTTAATGTGACCAATTATTCTGACTAA  100

seq1  ATCATGGACTGTTCTAATAATCAATCCAATATTAGAAATAACAGACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGACTGTTCTAATAATCAATCCAATATTAGAAATAACAGACTTCA  150

seq1  TTTAAAAGGCTGGTTCTAGACAGTTTTAGAGACATATTTGAAAGTTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGCTGGTTCTAGACAGTTTTAGAGACATATTTGAAAGTTAGCT  200

seq1  ACAGTTTTCTATGATGATATGTTAACAATAGATGGGGACAGGTTATAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTCTATGATGATATGTTAACAATAGATGGGGACAGGTTATAGCA  250

seq1  AATATTAAGGTTAGGTTAGCTACTAAAGGTCGTGCTTCATTTCAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGGTTAGGTTAGCTACTAAAGGTCGTGCTTCATTTCAATATAT  300

seq1  ATGTGTCATGCCATTAACTTATAATGCAACCATTAATTGGGGAAAGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATGCCATTAACTTATAATGCAACCATTAATTGGGGAAAGACTA  350

seq1  AGGCTCATTTGCAGGGAGTGTGGAAAAATACAGATATTTCACATATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCATTTGCAGGGAGTGTGGAAAAATACAGATATTTCACATATTATA  400

seq1  CAGCAATTAAAGATAGAAATTTCAGATATTAACAGAAGTCCTTTGGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTAAAGATAGAAATTTCAGATATTAACAGAAGTCCTTTGGATAA  450

seq1  ATAGAACATTGAGAAATTAGCCAGAGATTTAAAAAATAATCTATTTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACATTGAGAAATTAGCCAGAGATTTAAAAAATAATCTATTTGTAT  500

seq1  TAAATCCCTTAGATTGGGTTAAGTATATAATCTTGCATGCTATTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCCTTAGATTGGGTTAAGTATATAATCTTGCATGCTATTAT  546

seq1: chr5_87839924_87840981
seq2: B6Ng01-159N09.g_69_1115 (reverse)

seq1  AAGTGGGGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATG  50
      |||||| |||||||||||||||||||||||| ||  ||||||||||||||
seq2  AAGTGGAGGGGGGGAGGGTATGGGGGACTTTGGGATTAGCATTGGAAATG  50

seq1  TAATTGAGGAAAATATGTAATAAAAAATATTAAAAAAATAAAATAAAACA  100
      |||||||||  |||||||||| ||||||| ||||||||||||   |||||
seq2  TAATTGAGG--AATATGTAAT-AAAAATA-TAAAAAAATAAA--TAAACA  94

seq1  ACCTCATTTTTTAGTATGCTATGACAGTCATGTACAACTTAGGATTCAAC  150
      | |||| |||||||||||||||||||||||||||| |||||||| |||||
seq2  A-CTCA-TTTTTAGTATGCTATGACAGTCATGTAC-ACTTAGGA-TCAAC  140

seq1  TTATCTGATAGAGGAAGAGGAAGAGTAGATGCTCCTTAGGGATGGGGGAG  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TATCTGATAGAGGAAGAGGAAGAGTAGATGCTCCTTAGGGATGGGGGAG  189

seq1  AGGTTAATACAAAACAGGCATGAAGAATGTGAAGGTAGATGGCAGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATACAAAACAGGCATGAAGAATGTGAAGGTAGATGGCAGAATTT  239

seq1  AAGTGATCTAATAAGGGAAATGGGAAGAGAGGAAAGGCAAGGGGGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCTAATAAGGGAAATGGGAAGAGAGGAAAGGCAAGGGGGAGAAG  289

seq1  AGGAGAGAAAAGGAGAAAATAACAAGAAGAATTCTGAAAAAATAATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAAAGGAGAAAATAACAAGAAGAATTCTGAAAAAATAATTATA  339

seq1  TTCTTAACTATTTATGCCTTACATCTCTTCTATGCATAAACATACATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACTATTTATGCCTTACATCTCTTCTATGCATAAACATACATATA  389

seq1  TAGTTTTAATGAACTTCTCTCATCTAAACTGACATTCCTTCTTCTAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAATGAACTTCTCTCATCTAAACTGACATTCCTTCTTCTAATAG  439

seq1  CCAAGGACTTCCTACCAAAAAGTCCCACAACAGATATGAAAGCCTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACTTCCTACCAAAAAGTCCCACAACAGATATGAAAGCCTTCTTT  489

seq1  TGAAGTGTTGGACAGGACTATCAAGATCATTCTTGGCCAAGCAGTGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTTGGACAGGACTATCAAGATCATTCTTGGCCAAGCAGTGTGGA  539

seq1  GGAAGAAGCAGAAGGGTTACATATTTAGGACAATAAGAAAGAAATATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGCAGAAGGGTTACATATTTAGGACAATAAGAAAGAAATATAAA  589

seq1  GCATAAGAAGGAATTAGAAAACAAAAAGTAAGAGAGAGAATAATATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAAGGAATTAGAAAACAAAAAGTAAGAGAGAGAATAATATATGT  639

seq1  ACTGAATCATGCCCTAATGTATCTCTGCTCCTATTATTACCATTACCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCATGCCCTAATGTATCTCTGCTCCTATTATTACCATTACCTTC  689

seq1  AGGATAATTCTTGTTTGTTTGGCTTTCAGTAAGAAGACAATAAATGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATTCTTGTTTGTTTGGCTTTCAGTAAGAAGACAATAAATGTATG  739

seq1  AATTTGTGAATGAATGAATAAATGAATAATGAATAAATGAGTGAACCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGAATGAATGAATAAATGAATAATGAATAAATGAGTGAACCACA  789

seq1  TTTTAAAAGTTTATACTCACAAAGGATTGTCTATGACTTCCTCCAGTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTTTATACTCACAAAGGATTGTCTATGACTTCCTCCAGTGCA  839

seq1  TTGAGTACATCTGATCTTGACATTGTTCTGATATTCAATGTAACAGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTACATCTGATCTTGACATTGTTCTGATATTCAATGTAACAGCTGC  889

seq1  TCCTTTGGCCACCATATGGGCAATATTATCATGTTGTTCTCCAAACAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGCCACCATATGGGCAATATTATCATGTTGTTCTCCAAACAAAG  939

seq1  GAATGCCAATCATAGGGATTCCATGATAGATCACCTCATAGACACCATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCAATCATAGGGATTCCATGATAGATCACCTCATAGACACCATTG  989

seq1  GCCCCACCATGAGTTACAAAGGCTTTTGTTTTTGGATGACCTAGAAGAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCATGAGTTACAAAGGCTTTTGTTTTTGGATGACCTAGAAGAAG  1039

seq1  ATGAATTC  1058
      ||||||||
seq2  ATGAATTC  1047