BAC Information

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BAC

Clone NameB6Ng01-159P13
Chromosome6 (Build37)5 (Build37)
Map Location 142,304,314 - 142,304,65698,585,199 - 98,586,261
singlet/doubletsingletsinglet
Overlap geneBC027061
Upstream genePde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp
Downstream geneRecql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159P13.bB6Ng01-159P13.g
ACCDH953480DH953481
length1,1361,064
definitionDH953480|Mus musculus domesticus DNA, BAC clone: B6Ng01-159P13, 5' end.DH953481|Mus musculus domesticus DNA, BAC clone: B6Ng01-159P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,304,314 - 142,304,656)(98,585,199 - 98,586,261)
sequence
gaattctcttagtgtggttttaggatttatccctgtgggctgaagatgta
agtgatcagttaagagcaagagccctggctgctcttcccaaggccccgtg
ttcaaatcccagcccccacagggcagttcacaactgtctgcaattccaga
tccagggatctgacaccctcatacagacatacgtagaggcagaacaccaa
tgtaaatacaaactccgtctgtgccacagcaaatcttcaacacttcatac
ctattctggttgcatagtattccgttatatacacaacccgaattctgctg
atttaccaggtggtaggcacttggcttatttttatattttgctttttatg
gatatcactgctatgatgttggatgagattttgtgcggatattggtccac
ttttcttgacagactcccaagagtagaaattctctgtcagatggtccttc
gagtggagctaccacacagctttctaaactcagtgcggtgatccacactc
ttaccaggtaaatgatacagtttagatttcgtctcctttctgttcagcta
ctgacaggcactttgactatggcatctctagtgaactgaaggggtgcctc
tgtggtcttaaattgcatgtcctgggtgaataaaaaagtgagctttttgt
gtttctgtttgtaatgtgtgaatctttttaattctgtgttcattttaact
gcatttgtaagtcttggtaattaaattgtaggattctcccatattctaca
tacaatctctttaacagatgtatgtacaaataaattaagtcattctgaga
gtcatcgttttcatttccctccagtatcttctggcgagggggtagggggt
tagcaaaagtctgaaattgaggccgggtgtggtggcgcacgccgttaatc
ccagcactcgggaggcagaggcagtggatttctgagtttgaggccagcct
ggtctacaagtgagttccaggacagccaggactataaagaagaaccctgt
ctcgaaaccaaataataatataataattaatataataatataaataaagt
cctttggggttttatgacactcagttggatggatctgtggcacacctgta
gatagagcatctagagcgtgaaaatgaattttctaa
gaattcctaacagtcctggagtatatgcagtccatgggccacacacctat
aagcgactgtaatatcaaagtctttattattattattactactttctagt
tctcctttcatttacctatttttatgcatgatgtatttttgttactctca
tattaagtaatatatatatacatatatatgtatacatatgcatatatatg
tatatatttgtgtgtatatatgaacacatataggtacacctttataagga
gtttagctttcttgaaggattgacctatttataattagaaagactcctct
ttatgactagtaactttttgttctcaaaactgctttgcccagttcccagc
tgtgcctgtctttctagttggtgactggtgctcttacattcttggacttt
aaatctatctgcatctttgtatctaaagtgtctttattttgtacaaggaa
tggctggatcatgttttctttaaaactctggcctacacatctcagttccg
atttagttgctgagttcactctctctggaagtttctattgtgtatatttt
atccagtgtgtgtgtcatacttcctatttcctttgtatgcttcatgatgt
tcttgccggaaaatggatacttttgataatatacttaagtaattctggga
acttgtcctgacttaaggcttgttactataattttcttgtttacatgttt
agcaaatggtggatcatttctgttaagtctcttctgcatccttcttgtaa
agtgtagtcagcctctaatgctgtcctatccaggatacacagctttgact
ctattacatggggccctgagatacccataatgctgcagtttctcttcagc
ctttactggtctcctgccagactcttgctaagtaagttctgggcacattg
cttcttggcaacattgtttctgtcagagccataaagttgtaagctcctcg
aagcagtgctcatctctgtcctttaatgtaaagaacgaccctgatttaaa
agatcacatgtaagtggttttattttacagtacattttggctggtgcccc
ttttggaagatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142304314_142304656
seq2: B6Ng01-159P13.b_943_1184

seq1  TTAATCCCAGCACTCGGGAGGCAGAGACAGGCGGATTTCTGAGTTCGAGG  50
      |||||||||||||||||||||||||| || | ||||||||||||| ||||
seq2  TTAATCCCAGCACTCGGGAGGCAGAGGCA-GTGGATTTCTGAGTTTGAGG  49

seq1  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGGGA  100
      |||||||||||||| ||||||||||||||||||||||| ||||| ||   
seq2  CCAGCCTGGTCTAC-AAGTGAGTTCCAGGACAGCCAGGACTATAAAGAAG  98

seq1  AACCCTGTCTCGAAAAACCAAAAAAAAA---AATAATGTGTGTGTGTGTG  147
      ||||||||||||  |||||||| || ||   ||||||   | |     | 
seq2  AACCCTGTCTCG--AAACCAAATAATAATATAATAATTAATATAATAATA  146

seq1  TGTGT---GT-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATTTTAA  193
      |   |   ||  | || |  | | ||    |  || ||  || || |   
seq2  TAAATAAAGTCCTTTGGGGTTTTATGACACTCAGT-TGGATGGATCT---  192

seq1  ATAATTGGCCCATTTGCA-AAACCGTTGCTACAATTGAGCATTGTCCATG  242
           |||| ||  || | | |  |   |||     ||||  ||   |||
seq2  ----GTGGCACACCTGTAGATAGAGCATCTA-----GAGC-GTGAAAATG  232

seq1  ACTATTTTCTACAAAATCCACTAAGGACAATACTTAGTAATTTAATTTTA  292
      |  ||||||||                                       
seq2  A--ATTTTCTAA--------------------------------------  242

seq1  ATAATCTTCCAAGAAGTTTTTGGCTTATAAAATTCAAAATGAATTTTCTA  342
                                                        
seq2  --------------------------------------------------  242

seq1  A  343
       
seq2  -  242

seq1: chr5_98585199_98586261
seq2: B6Ng01-159P13.g_70_1133

seq1  GAATTCCTAACTGTCCTGGAGTATATGCAGTCCATGGGCCACACACCTAT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACAGTCCTGGAGTATATGCAGTCCATGGGCCACACACCTAT  50

seq1  AAGCGACTGTAATATCAAAGTCTTTATTATTATTATTACTACTTTCTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGACTGTAATATCAAAGTCTTTATTATTATTATTACTACTTTCTAGT  100

seq1  TCTCCTTTCATTTACCTATTTTTATGCATGATGTATTTTTGTTACTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCATTTACCTATTTTTATGCATGATGTATTTTTGTTACTCTCA  150

seq1  TATTAAGTAATATATATATACATATATATGTATACATATGCATATATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTAATATATATATACATATATATGTATACATATGCATATATATG  200

seq1  TATATATTTGTGTGTATATATGAACACATATAGGTACACCTTTATAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTGTGTGTATATATGAACACATATAGGTACACCTTTATAAGGA  250

seq1  GTTTAGCTTTCTTGAAGGATTGACCTATTTATAATTAGAAAGACTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCTTTCTTGAAGGATTGACCTATTTATAATTAGAAAGACTCCTCT  300

seq1  TTATGACTAGTAACTTTTTGTTCTCAAAACTGCTTTGCCCAGTTCCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTAGTAACTTTTTGTTCTCAAAACTGCTTTGCCCAGTTCCCAGC  350

seq1  TGTGCCTGTCTTTCTAGTTGGTGACTGGTGCTCTTACATTCTTGGACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTCTTTCTAGTTGGTGACTGGTGCTCTTACATTCTTGGACTTT  400

seq1  AAATCTATCTGCATCTTTGTATCTAAAGTGTCTTTATTTTGTACAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATCTGCATCTTTGTATCTAAAGTGTCTTTATTTTGTACAAGGAA  450

seq1  TGGCTGGATCATGTTTTCTTTAAAACTCTGGCCTACACATCTCAGTTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGATCATGTTTTCTTTAAAACTCTGGCCTACACATCTCAGTTCCG  500

seq1  ATTTAGTTGCTGAGTTCACTCTCTCTGGAAGTTTCTATTGTGTATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTGCTGAGTTCACTCTCTCTGGAAGTTTCTATTGTGTATATTTT  550

seq1  ATCCAGTGTGTGTGTCATACTTCCTATTTCCTTTGTATGCTTCATGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGTGTGTGTCATACTTCCTATTTCCTTTGTATGCTTCATGATGT  600

seq1  TCTTGCCGGAAAATGGATACTTTTGATAATATACTTAAGTAATTCTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCGGAAAATGGATACTTTTGATAATATACTTAAGTAATTCTGGGA  650

seq1  ACTTGTCCTGACTTAAGGCTTGTTACTATAATTTTCTTGTTTACATGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCCTGACTTAAGGCTTGTTACTATAATTTTCTTGTTTACATGTTT  700

seq1  AGCAAATGGTGGATCATTTCTGTTAAGTCTCTTCTGCATCCTTCTTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGGTGGATCATTTCTGTTAAGTCTCTTCTGCATCCTTCTTGTAA  750

seq1  AGTGTAGTCAGCCTCTAATGCTGTCCTATCCAGGATACACAGCTTTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTCAGCCTCTAATGCTGTCCTATCCAGGATACACAGCTTTGACT  800

seq1  CTATTACATGGGGCCCTGAGATACCCATAATGCTGCAGGTTTCTCTTCAG  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTATTACATGGGGCCCTGAGATACCCATAATGCTGCA-GTTTCTCTTCAG  849

seq1  CCTTTACTGGTCTCCTGCCAGACTCTTGCTAAGTAAGTTCTGGGCAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTTTACTGGTCTCCTGCCAGACTCTTGCTAAGTAAGTTCTGGGC-ACAT  898

seq1  TGCTTCTTGGCAACATTGTTTCTTGTCAGAGCCATAAAG-TGTAAGCTCC  949
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  TGCTTCTTGGCAACATTGTTTC-TGTCAGAGCCATAAAGTTGTAAGCTCC  947

seq1  TCGAAGGCAGTGCTCATCTCTGTCCTTT-ATGTAAAGAACGACCCTGAAT  998
      ||||| |||||||||||||||||||||| ||||||||||||||||||| |
seq2  TCGAA-GCAGTGCTCATCTCTGTCCTTTAATGTAAAGAACGACCCTGATT  996

seq1  TTAAAGATCACATGTAGGTG--TGTATTTTACAGTACATTTTTGCTTGTG  1046
      | |||||||||||||| |||  | |||||||||||||||||| ||| |||
seq2  TAAAAGATCACATGTAAGTGGTTTTATTTTACAGTACATTTTGGCTGGTG  1046

seq1  CCCCTTTT-GAAGATCAC  1063
      |||||||| |||||||||
seq2  CCCCTTTTGGAAGATCAC  1064