BAC Information

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BAC

Clone NameB6Ng01-160B01
Chromosome5 (Build37)
Map Location 46,528,989 - 46,746,230
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160B01.bB6Ng01-160B01.g
ACCDH953542DH953543
length766624
definitionDH953542|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B01, 5' end.DH953543|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,528,989 - 46,529,748)(46,745,600 - 46,746,230)
sequence
gaattctttcccatccccctccttctcccaggacacattttcctttgttt
ccaagccaagacaaaaatgttggctatgggaaatatttattgggtgccat
ttagacaaatacgagaatctgattgaatactctccatgactgccggttga
aactaaatacgaagttgccatggatactggttgcttggcctctgctctaa
tacattagagcctttttagttcaacagtgtgcaaaccacagatgttgcca
tgcattgtattaataatcagtgtggatctcttagcaaaagaatagcccag
gtttgttttagtggagaggggtggaaatcctcagatgcaaaccaaaatgc
cctgaacttgaggggttgcttccatatatatacctttacagatataaatt
ttagttttcagtctgctttcgtttaacctggaccctctttgtttgttatt
tatttagaataaattattattactattattatttggaaaaattccacagg
gatatatgttaggaaaattgtacacatttggttacagaatttaaagccac
aaattcaacacagtaatggaggatgaaacaagaaaccccaggttacatca
gaggctaaacatgaagtcacagcagagagatctcagattttatataaaat
attttgctttccacacatcatctgcatgtttttggggcaaatgaagcaac
acaaaacctcgttttcttatttccatgggttcttaacactttgttaaaaa
caaaacataacaaaac
gaattccagagtctaatttgaatccttcctcattctgtgaatgaaacaag
cccagtctcagacacagcggcactccagctttaatgctgactttaatatg
atgcaacctagaccttatttcagtttaaatccttctatgttgacatcata
tattcctgtctctgaaataaatgatttttaagtctgttttaaggctgtta
tagaggacatctggaaaaaattgaaccatggttaaatatgcataataaca
acagctatttttactagcttttaaataaatgcacagcatgataatgagcc
ctttgcataaattatttcattatacaattttaaatttttatctgttagct
gaagaaggaagggagggacagggagaaaggaaagatgagtaaggccaagt
tcctatacccttataacaatgaagacattatgctctaagtcttcccatct
aagagaacagtgtctataaacagaaagatgagaatgagaaagttagtttc
tagaagaaacacattccaatggggggggggatctcagaagttgataatgg
gattttcctaattctggataccatgcgactagaaaacattgtgtgtgtgt
gtgtgtgtgtgtgtgtgttgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46528989_46529748
seq2: B6Ng01-160B01.b_45_810

seq1  GAATTCTTTCCCATCCCCCTCCTTCTCCCAGGACACATTTTCCTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCATCCCCCTCCTTCTCCCAGGACACATTTTCCTTTGTTT  50

seq1  CCAAGCCAAGACAAAAATGTTGGCTATGGGAAATATTTATTGGGTGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCAAGACAAAAATGTTGGCTATGGGAAATATTTATTGGGTGCCAT  100

seq1  TTAGACAAATACGAGAATCTGATTGAATACTCTCCATGACTGCCGGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAATACGAGAATCTGATTGAATACTCTCCATGACTGCCGGTTGA  150

seq1  AACTAAATACGAAGTTGCCATGGATACTGGTTGCTTGGCCTCTGCTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATACGAAGTTGCCATGGATACTGGTTGCTTGGCCTCTGCTCTAA  200

seq1  TACATTAGAGCCTTTTTAGTTCAACAGTGTGCAAACCACAGATGTTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAGAGCCTTTTTAGTTCAACAGTGTGCAAACCACAGATGTTGCCA  250

seq1  TGCATTGTATTAATAATCAGTGTGGATCTCTTAGCAAAAGAATAGCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTATTAATAATCAGTGTGGATCTCTTAGCAAAAGAATAGCCCAG  300

seq1  GTTTGTTTTAGTGGAGAGGGGTGGAAATCCTCAGATGCAAACCAAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTAGTGGAGAGGGGTGGAAATCCTCAGATGCAAACCAAAATGC  350

seq1  CCTGAACTTGAGGGGTTGCTTCCATATATATACCTTTACAGATATAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTTGAGGGGTTGCTTCCATATATATACCTTTACAGATATAAATT  400

seq1  TTAGTTTTCAGTCTGCTTTCGTTTAACCTGGACCCTCTTTGTTTGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCAGTCTGCTTTCGTTTAACCTGGACCCTCTTTGTTTGTTATT  450

seq1  TATTTAGAATAAATTATTATTACTATTATTATTTGGAAAAATTCCACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAATAAATTATTATTACTATTATTATTTGGAAAAATTCCACAGG  500

seq1  GATATATGTTAGGAAAATTGTACACATTTGGTTACAGAATTTAAAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGTTAGGAAAATTGTACACATTTGGTTACAGAATTTAAAGCCAC  550

seq1  AAATTCAACACAGTAATGGAGGATGAAACAAGAAACCCCAGGTTACATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAACACAGTAATGGAGGATGAAACAAGAAACCCCAGGTTACATCA  600

seq1  GAGGCTAAACATGAAGTCACAGCAGAGAGATCTCAGA-TTTATATAAAAT  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGGCTAAACATGAAGTCACAGCAGAGAGATCTCAGATTTTATATAAAAT  650

seq1  ATTTTGCTTTCCACACATCATCTGCATG-TTTTGGGGCAAATGAAGCAAC  698
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTTGCTTTCCACACATCATCTGCATGTTTTTGGGGCAAATGAAGCAAC  700

seq1  ACAAAACCTCG-TTTCTTATTTCCAT-GGTTCTTAACACTT--GTAAAAA  744
      ||||||||||| |||||||||||||| ||||||||||||||   ||||||
seq2  ACAAAACCTCGTTTTCTTATTTCCATGGGTTCTTAACACTTTGTTAAAAA  750

seq1  CAAAACAAAACAAAAC  760
      ||||||| ||||||||
seq2  CAAAACATAACAAAAC  766

seq1: chr5_46745600_46746230
seq2: B6Ng01-160B01.g_66_689 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACAATGTTTTC  50
            |||||| |||||||||||||||||||||||||||||||||||||
seq2  ------CACACA-ACACACACACACACACACACACACACACAATGTTTTC  43

seq1  TAGTCGCATGGTATCCAGAATTAGGAAAATCCCATTATCAACTTCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGCATGGTATCCAGAATTAGGAAAATCCCATTATCAACTTCTGAGA  93

seq1  TCCCCCCCCCCATTGGAATGTGTTTCTTCTAGAAACTAACTTTCTCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCATTGGAATGTGTTTCTTCTAGAAACTAACTTTCTCATTC  143

seq1  TCATCTTTCTGTTTATAGACACTGTTCTCTTAGATGGGAAGACTTAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCTGTTTATAGACACTGTTCTCTTAGATGGGAAGACTTAGAGC  193

seq1  ATAATGTCTTCATTGTTATAAGGGTATAGGAACTTGGCCTTACTCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCTTCATTGTTATAAGGGTATAGGAACTTGGCCTTACTCATCTT  243

seq1  TCCTTTCTCCCTGTCCCTCCCTTCCTTCTTCAGCTAACAGATAAAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCCCTGTCCCTCCCTTCCTTCTTCAGCTAACAGATAAAAATTT  293

seq1  AAAATTGTATAATGAAATAATTTATGCAAAGGGCTCATTATCATGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTATAATGAAATAATTTATGCAAAGGGCTCATTATCATGCTGTG  343

seq1  CATTTATTTAAAAGCTAGTAAAAATAGCTGTTGTTATTATGCATATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTAAAAGCTAGTAAAAATAGCTGTTGTTATTATGCATATTTAA  393

seq1  CCATGGTTCAATTTTTTCCAGATGTCCTCTATAACAGCCTTAAAACAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTCAATTTTTTCCAGATGTCCTCTATAACAGCCTTAAAACAGAC  443

seq1  TTAAAAATCATTTATTTCAGAGACAGGAATATATGATGTCAACATAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCATTTATTTCAGAGACAGGAATATATGATGTCAACATAGAAG  493

seq1  GATTTAAACTGAAATAAGGTCTAGGTTGCATCATATTAAAGTCAGCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAACTGAAATAAGGTCTAGGTTGCATCATATTAAAGTCAGCATTA  543

seq1  AAGCTGGAGTGCCGCTGTGTCTGAGACTGGGCTTGTTTCATTCACAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAGTGCCGCTGTGTCTGAGACTGGGCTTGTTTCATTCACAGAAT  593

seq1  GAGGAAGGATTCAAATTAGACTCTGGAATTC  631
      |||||||||||||||||||||||||||||||
seq2  GAGGAAGGATTCAAATTAGACTCTGGAATTC  624