BAC Information

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BAC

Clone NameB6Ng01-160C23
Chromosome5 (Build37)5 (Build37)
Map Location 18,084,511 - 18,084,577101,630,612 - 101,631,718
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160C23.bB6Ng01-160C23.g
ACCDH953630DH953631
length9111,076
definitionDH953630|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C23, 5' end.DH953631|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,577)(101,630,612 - 101,631,718)
sequence
gaattctcactgaggaatactgaatgactgagaatcacctaaaaaaaatg
ttcaacatccataatcatcaaggaaatgcaaatcaaaacaaccctgagat
tccacctcattccagtcagaatggctaagattaaacactcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgctggtg
gaattgcaagttggtacaaccactctggaaatcagtttggtggttcctca
gaaaattggacatagtactactggaagatccagcaatacctctcctgggc
atatacccagatgatgttccaacttgtaataaggacacatgctccactat
gttcatagcagccttatttataataaccaggagctggaaagaacccagat
gtccctcaacataggattggatacagagaatgtggtacatttacacaatg
ggatactactcagctattaaaaacaatgaattcatgaaattcttacacaa
atggatggatctggaggatatcctcctaagtgaggtaacccaatcacaaa
agaacacacctgatatgtactcactgataagtgagcccagaagctcagaa
tacccaagatacagtttgcaaaacacatgaaattcaagaaggaagaccaa
agtgtggatacttccatccttcttagaagggggaacaaaatacccaggga
aggagttacagagacaaagttcagagcagagactgaaggaatgatcatcc
agaaactgccccacctggagatccatcccataagcaaccaccaaacccat
actctattgcagatgccaacaagagcttgctgacagagcatgatatagct
gtctcctgtgaggctctgccagttcctgacaatacagaagtggatgctca
catcatccata
gaattcccaacttaaagcttttgctccatggagctgtagaaatgcacctt
agcccagtgctaccttgggccttggagtttctccagcagttgtcaacttt
gcagggcagttgtcaactttgcagggctctcattcctcttcctggtgcct
cagactttggggagaatatgggtctgtcctgagccttgaaaagagatcct
atggctttctaagaagatgaactggtcaccagaatagccttgacaaacat
ggttttgccttctgcgtgcctgtgactttactggttgttaaccacaccag
agagtaagagaaaagatttgggaggaagaaaagcgagtgtggaggaggat
caaagccaagtgtgaaagcctggacagtgtgaacattgttctaatattta
caaaatgatggttcaccttcatgggtcaatcaagcatggaacacatgact
gaagactaaccctgagtccaaactggtactgagagagatcaattcaaaca
atgttaattgtattaaactaacaggaaattgcagaaatatttgaattacc
aatgacttagacttaaaaaatttaaaaaatatctttcagatgattcagac
tgatcccttcttttctagatgggaaaatgtgagtcagagaataaaggact
tgttcgaggtcctacagaaagagttgcatccttacccttcctcagtgctg
cacacacacccccatagtgcttggtgctcaatgctgcatgcacatccaca
gtgcttggtgttcagtactcctgggtaactgtagaactaaaaactaaagt
tagaaaatatttctcaacatatttaatgaaggttgacctggtataactat
agatgatgcacagatagtacacattcccaatctgtgttagctctagttct
atagccttactcacaagggagcagacactcttgtatgaggttgtacgagc
ttgcagtcagatatactaatctcattttatataggtctaacttaagcttt
agctatcatgatagatccattaagacagcactagccagatgaaagttgat
ctccatgagctcagagaactgtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084577
seq2: B6Ng01-160C23.b_358_424 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGAA  67
      ||| |||| ||||||||
seq2  CTTATTACAAGTTGGAA  67

seq1: chr5_101630612_101631718
seq2: B6Ng01-160C23.g_66_1141

seq1  GAATTCAAAACTTAGAGCTTTTGCTCCATGGAGCTGTAGAAATGCACCTT  50
      ||||||  |||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACTTAAAGCTTTTGCTCCATGGAGCTGTAGAAATGCACCTT  50

seq1  AGCCCAGTGCTACCTTGGGCCTTGGAGTTTCTCCAGCAGTTGTCAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGCTACCTTGGGCCTTGGAGTTTCTCCAGCAGTTGTCAACTTT  100

seq1  GCAGGGCAGTTGTCAACTTTGCAGGGCTCTCATTCCTCTTCCTGGTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAGTTGTCAACTTTGCAGGGCTCTCATTCCTCTTCCTGGTGCCT  150

seq1  CAGACTTTGGGGAGAATATGGGTCTGTCCTGAGCCTTGAAAAGAGATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTGGGGAGAATATGGGTCTGTCCTGAGCCTTGAAAAGAGATCCT  200

seq1  ATGGCTTTCTAAGAAGATGAACTGGTCACCAGAATAGCCTTGACAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTCTAAGAAGATGAACTGGTCACCAGAATAGCCTTGACAAACAT  250

seq1  GGTTTTGCCTTCTGCGTGCCTGTGACTTTACTGGTTGTTAACCACACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCCTTCTGCGTGCCTGTGACTTTACTGGTTGTTAACCACACCAG  300

seq1  AGAGTAAGAGAAAAGATTTGGGAGGAAGAAAAGCGAGTGTGGAGGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGAGAAAAGATTTGGGAGGAAGAAAAGCGAGTGTGGAGGAGGAT  350

seq1  CAAAGCCAAGTGTGAAAGCCTGGACAGTGTGAACATTGTTCTAATATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAAGTGTGAAAGCCTGGACAGTGTGAACATTGTTCTAATATTTA  400

seq1  CAAAATGATGGTTCACCTTCATGGGTCAATCAAGCATGGAACACATGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGATGGTTCACCTTCATGGGTCAATCAAGCATGGAACACATGACT  450

seq1  GAAGACTAACCCTGAGTCCAAACTGGTACTGAGAGAGATCAATTCAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTAACCCTGAGTCCAAACTGGTACTGAGAGAGATCAATTCAAACA  500

seq1  ATGTTAATTGTATTAAACTAACAGGAAATTGCAGAAATATTTGAATTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTGTATTAAACTAACAGGAAATTGCAGAAATATTTGAATTACC  550

seq1  AATGACTTAGACTTAAAAAATTTAAAAAATATCTTTCAGATGATTCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTAGACTTAAAAAATTTAAAAAATATCTTTCAGATGATTCAGAC  600

seq1  TGATCCCTTCTTTTCTAGATGGGAAAATGTGAGTCAGAGAATAAAGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTTCTTTTCTAGATGGGAAAATGTGAGTCAGAGAATAAAGGACT  650

seq1  TGTTCGAGGTCCTACAGAAAGAGTTGCATCCTTACCCTTCCTCAGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGAGGTCCTACAGAAAGAGTTGCATCCTTACCCTTCCTCAGTGCTG  700

seq1  CACACACACCCCCATAGTGCTTGGTGCTCAATGCTGCATGCACATCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACCCCCATAGTGCTTGGTGCTCAATGCTGCATGCACATCCACA  750

seq1  GTGCTTGGTGTTCAGTACTCCTGGGTAACTGTAGAACTAAAAACTAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGTGTTCAGTACTCCTGGGTAACTGTAGAACTAAAAACTAAAGT  800

seq1  TAGAAAATATTTCTCAACATATTTAATGAAGGTTGACCTGGTATTAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGAAAATATTTCTCAACATATTTAATGAAGGTTGACCTGGTA-TAACTA  849

seq1  TAGATGATGCACAGATAGGTACAACATTCCCAATCTGTGTTAGCTCTAGT  900
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  TAGATGATGCACAGATA-GTAC-ACATTCCCAATCTGTGTTAGCTCTAGT  897

seq1  TCTATAAGCCTTACTCACCAAGGGAGGCAAGAACACTCTTGTAATGAAGG  950
      ||||| ||||||||||| ||||||| |||   |||||||||| ||| |||
seq2  TCTAT-AGCCTTACTCA-CAAGGGA-GCA--GACACTCTTGT-ATG-AGG  940

seq1  GTGTACCGAGGCTTGCCAAGTCCAGATTATACTAAATCTCATTTTATATA  1000
       |||| ||| ||||||  ||| |||| |||||| ||||||||||||||||
seq2  TTGTA-CGA-GCTTGC--AGT-CAGA-TATACT-AATCTCATTTTATATA  983

seq1  GGTCTAAAACTTGTAGCTTTAGCTAATCATGATAGTATCCATTTTAAGAC  1050
      |||||  |||||  |||||||||| |||||||||| |||||  |||||| 
seq2  GGTCT--AACTT-AAGCTTTAGCT-ATCATGATAG-ATCCA--TTAAGA-  1025

seq1  CAGCACTAGGCAGATAGAAAAGTAGATCTCTATGAGCTCAAGGAGAACCT  1100
      ||||||||| |||||   ||||| |||||| |||||||||  ||||||  
seq2  CAGCACTAGCCAGAT--GAAAGTTGATCTCCATGAGCTCA--GAGAAC--  1069

seq1  GGTCTGC  1107
       ||||||
seq2  TGTCTGC  1076