BAC Information

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BAC

Clone NameB6Ng01-160E15
Chromosome5 (Build37)
Map Location 96,589,986 - 96,751,995
singlet/doubletdoublet
Overlap geneCnot6l, LOC100040559, Mrpl1
Upstream geneLOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160E15.bB6Ng01-160E15.g
ACCDH953705DH953706
length1,137871
definitionDH953705|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E15, 5' end.DH953706|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,750,850 - 96,751,995)(96,589,986 - 96,590,852)
sequence
gaattcctttctgctgacatcctctttagctatctgccattgtgttttgg
tttcaacaatgtcactgagtatctgctattgtgccttagtttctacaatg
tcacttagtatctgcgattgtgttttggtttcaccgatgtcacttagggt
gtaactaaggctttgtgctataatcgagatcttctgcaactgagatttcc
ttcatatctgtggcaagagggaatgagtcattctcctcttcacctttttt
tattttttattttatttttgcttttgtgttactactggttttgtgccttt
gaaatgagattctaaaaagtgtatgcctttaattcattgaggtggacaca
taggcaaaaaactcaacaaaaataggaataaacatgtagctgaggcttat
atatgtgaagtagactctaaagactctgcacattagggttctccagggaa
acaggaaaataaaatattgtggatatatgagatgaaatttaacatgacaa
ttgactcacccaattatagaagccaagaaagcctaccaccagctgtccac
aagctggagaaccaggacagctgtcagtgtgatgctgtccaagtttgaag
tctgaggaccagaggagagagcaggggaacaccggagcaccaaggcctaa
tgaccaggagctccagtctctggggctagggagatggatattccagctca
gaagacaaactaatgtgctattgtgtaaccagcctggtggaaatgaacac
agtctaaggagacactttgtgtctctgaatctgacaatcagactgttagc
acaacacatccccaccatgagaacttccctcccaacatcttgtgctggga
aaaaggaaaggtgctatggaaagggggccttgtctccccaaagagaactc
acacagtcctaacaatttgtcaacgcacctatagatgagactgaagctaa
atatgatgggttgaggtagggcacacatctttctgtgactgctacatata
gaatgtgtgtgtgtggtgtatacctgggatctttttgtcctctccccacg
tggctacattgacaatctccatattttggctttctacattatttgggcct
tcaacctagcttactgatgccaggccttaagcctggt
gaattccgagatttcctgttttgattcactttccctcgggttccccacgc
cagcctgggaaggcctgcagttagaacgccaaaatatgccttcctctccc
cttgggagacgcggaggcggcacaggcgaccacgatccgcgtgtcccgcc
cccgaccctcacctggccaggcccggggcagcgcccggggcccgcgcgag
gacggagtcccaggagcgtctggggaggccaccgggcgcgaagacggtta
ggccgcgctgcaggccggcgcgcttcctgccgcggccccggcctcgggaa
ccgcggcccgagcccccgctgcccgccgcccgccgccgtgggggccgcac
tgcctcccgcgtccacggcgtgggttcccgccgagccgttctcacctgtg
aggctctgagccccggcctcgaagcggaaggacctcgacgctctggggtc
cccgactccgtccccctccccacacgcacacggcctggaacccgcgcccc
ctgaggcgacgcgggccggctcccgccgcccgacacacacacacgcagac
acacacacacgcgacacacacgcacacccactcgccgcggggccgcctcc
cgccccgccaaagtcccaactcacacacccacacacgttcgtccctcgcc
cacctcacttccccgggggagacgcgctccccctcgctccactcccggtc
cgactccgaggcacggaaacactcttacctcattctcctccgcgggccct
gaaacgagcaccagcagccatttccccgcgggctggggaaacacacacac
acaaacactcgcgcgcgcaccagggccccacagatgctccctccagaact
cagacgcaaacgcgaacaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96750850_96751995
seq2: B6Ng01-160E15.b_46_1182 (reverse)

seq1  ACCAGGCTTAGTGGCTGACCATCAGTAAGCTA-GTTGAGAGCCAAAATAA  49
      ||||||||||  | |||  ||||||||||||| |||||  ||| ||||||
seq2  ACCAGGCTTAAGGCCTG-GCATCAGTAAGCTAGGTTGAAGGCCCAAATAA  49

seq1  TAGTAGAAAG-CAAAATATGGAGATTGTTCAATGTAGCCACGTTGAGGAG  98
      | |||||||| |||||||||||||||| |||||||||||||| || ||||
seq2  T-GTAGAAAGCCAAAATATGGAGATTG-TCAATGTAGCCACG-TGGGGAG  96

seq1  AGGGACAAAAAGAT-CCAGGTATACA-CACACACACACATTCTATATGTA  146
      | |||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  A-GGACAAAAAGATCCCAGGTATACACCACACACACACATTCTATATGTA  145

seq1  GCAGTTCACAGAAAAGATGTGGTGCCCTACCTTCAACCCATCATTATTTA  196
      |||| |||||| |||||||| |||||||||| ||||||||||| ||||||
seq2  GCAG-TCACAG-AAAGATGT-GTGCCCTACC-TCAACCCATCA-TATTTA  190

seq1  GGCTTCAGTCTCATTCTATAAGGTGCGTTGACAAATTGTTAGGACTGTGT  246
       |||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  -GCTTCAGTCTCA-TCTAT-AGGTGCGTTGACAAATTGTTAGGACTGTGT  237

seq1  GAGTTCTCTTTGGGGAGACAAGGCCCCCTTTCCATAGCACCTTTCCTTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCTTTGGGGAGACAAGGCCCCCTTTCCATAGCACCTTTCCTTTT  287

seq1  TCCCAGCACAAGATGTTGGGAGGGAAGTTCTCATGGTGGGGATGTGTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACAAGATGTTGGGAGGGAAGTTCTCATGGTGGGGATGTGTTGT  337

seq1  GCTAACAGTCTGATTGTCAGATTCAGAGACACAAAGTGTCTCCTTAGACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGTCTGATTGTCAGATTCAGAGACACAAAGTGTCTCCTTAGACT  387

seq1  GTGTTCATTTCCACCAGGCTGGTTACACAATAGCACATTAGTTTGTCTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATTTCCACCAGGCTGGTTACACAATAGCACATTAGTTTGTCTTC  437

seq1  TGAGCTGGAATATCCATCTCCCTAGCCCCAGAGACTGGAGCTCCTGGTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGAATATCCATCTCCCTAGCCCCAGAGACTGGAGCTCCTGGTCA  487

seq1  TTAGGCCTTGGTGCTCCGGTGTTCCCCTGCTCTCTCCTCTGGTCCTCAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCTTGGTGCTCCGGTGTTCCCCTGCTCTCTCCTCTGGTCCTCAGA  537

seq1  CTTCAAACTTGGACAGCATCACACTGACAGCTGTCCTGGTTCTCCAGCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACTTGGACAGCATCACACTGACAGCTGTCCTGGTTCTCCAGCTT  587

seq1  GTGGACAGCTGGTGGTAGGCTTTCTTGGCTTCTATAATTGGGTGAGTCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAGCTGGTGGTAGGCTTTCTTGGCTTCTATAATTGGGTGAGTCAA  637

seq1  TTGTCATGTTAAATTTCATCTCATATATCCACAATATTTTATTTTCCTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGTTAAATTTCATCTCATATATCCACAATATTTTATTTTCCTGT  687

seq1  TTCCCTGGAGAACCCTAATGTGCAGAGTCTTTAGAGTCTACTTCACATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGAGAACCCTAATGTGCAGAGTCTTTAGAGTCTACTTCACATAT  737

seq1  ATAAGCCTCAGCTACATGTTTATTCCTATTTTTGTTGAGTTTTTTGCCTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTCAGCTACATGTTTATTCCTATTTTTGTTGAGTTTTTTGCCTA  787

seq1  TGTGTCCACCTCAATGAATTAAAGGCATACACTTTTTAGAATCTCATTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCACCTCAATGAATTAAAGGCATACACTTTTTAGAATCTCATTTC  837

seq1  AAAGGCACAAAACCAGTAGTAACACAAAAGCAAAAATAAAATAAAAAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACAAAACCAGTAGTAACACAAAAGCAAAAATAAAATAAAAAATA  887

seq1  AAAAAAGGTGAAGAGGAGAATGACTCATTCCCTCTTGCCACAGATATGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTGAAGAGGAGAATGACTCATTCCCTCTTGCCACAGATATGAA  937

seq1  GGAAATCTCAGTTGCAGAAGATCTCGATTATAGCACAAAGCCTTAGTTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTCAGTTGCAGAAGATCTCGATTATAGCACAAAGCCTTAGTTAC  987

seq1  ACCCTAAGTGACATCGGTGAAACCAAAACACAATCGCAGATACTAAGTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAGTGACATCGGTGAAACCAAAACACAATCGCAGATACTAAGTGA  1037

seq1  CATTGTAGAAACTAAGGCACAATAGCAGATACTCAGTGACATTGTTGAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAGAAACTAAGGCACAATAGCAGATACTCAGTGACATTGTTGAAA  1087

seq1  CCAAAACACAATGGCAGATAGCTAAAGAGGATGTCAGCAGAAAGGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACACAATGGCAGATAGCTAAAGAGGATGTCAGCAGAAAGGAATTC  1137

seq1: chr5_96589986_96590852
seq2: B6Ng01-160E15.g_68_938

seq1  GAATTCCGAGATTTCCTGTTTTGATTCACTTTCCCTCGGGTTCCCCACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGAGATTTCCTGTTTTGATTCACTTTCCCTCGGGTTCCCCACGC  50

seq1  CAGCCTGGGAAGGCCTGCAGTTAGAACGCCAAAATATGCCTTCCTCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGAAGGCCTGCAGTTAGAACGCCAAAATATGCCTTCCTCTCCC  100

seq1  CTTGGGAGACGCGGAGGCGGCACAGGCGACCACGATCCGCGTGTCCCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGACGCGGAGGCGGCACAGGCGACCACGATCCGCGTGTCCCGCC  150

seq1  CCCGACCCTCACCTGGCCAGGCCCGGGGCAGCGCCCGGGGCCCGCGCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACCCTCACCTGGCCAGGCCCGGGGCAGCGCCCGGGGCCCGCGCGAG  200

seq1  GACGGAGTCCCAGGAGCGTCTGGGGAGGCCACCGGGCGCGAAGACGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAGTCCCAGGAGCGTCTGGGGAGGCCACCGGGCGCGAAGACGGTTA  250

seq1  GGCCGCGCTGCAGGCCGGCGCGCTTCCTGCCGCGGCCCCGGCCTCGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCGCTGCAGGCCGGCGCGCTTCCTGCCGCGGCCCCGGCCTCGGGAA  300

seq1  CCGCGGCCCGAGCCCCCGCTGCCCGCCGCCCGCCGCCGTGGGGGCCGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGCCCGAGCCCCCGCTGCCCGCCGCCCGCCGCCGTGGGGGCCGCAC  350

seq1  TGCCTCCCGCGTCCACGGCGTGGGTTCCCGCCGAGCCGTTCTCACCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCGCGTCCACGGCGTGGGTTCCCGCCGAGCCGTTCTCACCTGTG  400

seq1  AGGCTCTGAGCCCCGGCCTCGAAGCGGAAGGACCTCGACGCTCTGGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGAGCCCCGGCCTCGAAGCGGAAGGACCTCGACGCTCTGGGGTC  450

seq1  CCCGACTCCGTCCCCCTCCCCACACGCACACGGCCTGGAACCCGCGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTCCGTCCCCCTCCCCACACGCACACGGCCTGGAACCCGCGCCCC  500

seq1  CTGAGGCGACGCGGGCCGGCTCCCGCCGCCCGACACACACACACGCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCGACGCGGGCCGGCTCCCGCCGCCCGACACACACACACGCAGAC  550

seq1  ACACACACACGCGACACACACGCACACCCACTCGCCGCGGGGCCGCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGCGACACACACGCACACCCACTCGCCGCGGGGCCGCCTCC  600

seq1  CG-CCCGCCAAAGTCCCAACTCACACACCCACACACGTTCGTCCCTCGCC  649
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCGCCAAAGTCCCAACTCACACACCCACACACGTTCGTCCCTCGCC  650

seq1  CACCTCACTTCCCC-GGGGAGACGCGCTCCCCCTCGCTCCACTCCCGGTC  698
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACCTCACTTCCCCGGGGGAGACGCGCTCCCCCTCGCTCCACTCCCGGTC  700

seq1  CGACTCCGAGGCACGGAAACACTC-TACCTCATTCTCCTCCGCGGGCCCT  747
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CGACTCCGAGGCACGGAAACACTCTTACCTCATTCTCCTCCGCGGGCCCT  750

seq1  G-AACGAGCACCAGCAGCCATTTCCCCGC-GGCTGGGGAAACACACACAC  795
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAACGAGCACCAGCAGCCATTTCCCCGCGGGCTGGGGAAACACACACAC  800

seq1  ACAAACACGCGCGCGCGCACCAGGGCCCCACAGATGCTCCCCTCCAGACC  845
      |||||||| ||||||||||||||||||||||||||||| ||||||||| |
seq2  ACAAACACTCGCGCGCGCACCAGGGCCCCACAGATGCT-CCCTCCAGAAC  849

seq1  TCAGACGCAAACACAAACACCC  867
      |||||||||||| | |||||||
seq2  TCAGACGCAAACGCGAACACCC  871