BAC Information

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BAC

Clone NameB6Ng01-160J17
Chromosome5 (Build37)
Map Location 74,048,542 - 74,201,856
singlet/doubletdoublet
Overlap geneSpata18
Upstream geneNpal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160J17.bB6Ng01-160J17.g
ACCDH953937DH953938
length3581,074
definitionDH953937|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J17, 5' end.DH953938|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,048,542 - 74,048,899)(74,200,789 - 74,201,856)
sequence
agttctaaagctgcatgggccacacagttcaatcctggtcacgtgtccag
ggcactatattttggtggtacccagcagtctctgtcagagcctatcagaa
cttggtagcccctggatcacacaggctcttgcctatttgcagtgggttct
ggaaaccatgctgtactgatatcttctgtttcgacgttacagtcaaactc
ctgtgatcaaaatctaaattattgcatcgaactcatcgaacaagttgcta
aagtgcaggcacagctctttgggatcctcacagtgacagcccaagaaggt
gagagcagcttctgcttcccccacccttatcctcttcgtgtgtgtgtgtg
tgtgtgtg
gaattcctcctcccaaaagactctagctgtggtgagttgacagaaaaata
gccaatatgattcccaaggggtgggggggggcaatgtccatctcctcccc
aggcagaagaataggactgcacctatcaattcttctttcattatatattt
taatacctgtagtctttcctcagcttaaaggctagagactgagggtcact
tgaaggaaattctggtgacaagttctgccccgatggttttacatctcttt
ttggaatgtgtaatctctgactctagacttcagtccaactcagttgaaga
aagtccgattgattttaatacattgttgtttttggtcgggtgaactacta
gatgctgaatggttgatacatttggttgactatgtgaatactgttattca
atcaatgtttattttgtaactgtgttttggctctacaattacgttttaac
cttctctagggcagacattatatctacccaggagaagaactcagctaggc
tgcttttctcgaggtgtgctttttggtactagatgatatgaatgcttgtt
tagagtgcagccaggatctaggctatatcaatggaactgaggaaaacaca
ctttgactgtttaagccccttccagggaatgttgtctagtgaagcctgtg
cctaaacctgggaaactaaactatctgcgaatctgaaaagtctcagccat
attctcatcagaagttgtagcaacagttatattctcaatgtatgtttaca
aagttttgtttatgtgtatatgtctctgtaagtatatggctccatgtgtg
gcaggtaccacctgagaacagaaaagggatcaagtccccaggagctggga
gtcatattgtgctggtaaccagactcaggtctctggaagagtggacatct
cctctaaaccacctgagcaacttcttccatccttttctatagcatgtttc
attgagtgcagattatagttgtcataccaacgtgcaacggtattttctct
attctgtctcaatggccaataccgtcaaggttttgttttttgtttttggt
ttttgttttttcgagacagggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_74048542_74048899
seq2: B6Ng01-160J17.b_47_404

seq1  AGTTCTAAAGCTGCATGGGCCACACAGTTCAATCCTGGTCACGTGTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAAGCTGCATGGGCCACACAGTTCAATCCTGGTCACGTGTCCAG  50

seq1  GGCACTATATTTTGGTGGTACCCAGCAGTCTCTGTCAGAGCCTATCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTATATTTTGGTGGTACCCAGCAGTCTCTGTCAGAGCCTATCAGAA  100

seq1  CTTGGTAGCCCCTGGATCACACAGGCTCTTGCCTATTTGCAGTGGGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGCCCCTGGATCACACAGGCTCTTGCCTATTTGCAGTGGGTTCT  150

seq1  GGAAACCATGCTGTACTGATATCTTCTGTTTCGACGTTACAGTCAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCATGCTGTACTGATATCTTCTGTTTCGACGTTACAGTCAAACTC  200

seq1  CTGTGATCAAAATCTAAATTATTGCATCGAACTCATCGAACAAGTTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCAAAATCTAAATTATTGCATCGAACTCATCGAACAAGTTGCTA  250

seq1  AAGTGCAGGCACAGCTCTTTGGGATCCTCACAGTGACAGCCCAAGAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAGGCACAGCTCTTTGGGATCCTCACAGTGACAGCCCAAGAAGGT  300

seq1  GAGAGCAGCTTCTGCTTCCCCCACCCTTATCCTCTTCGTGTGTGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGCTTCTGCTTCCCCCACCCTTATCCTCTTCGTGTGTGTGTGTG  350

seq1  TGTGTGTG  358
      ||||||||
seq2  TGTGTGTG  358

seq1: chr5_74200789_74201856
seq2: B6Ng01-160J17.g_67_1140 (reverse)

seq1  AAACCCTGTCTCGAAAAAACAAAAA-CAAAAAC-AAAAACAAAAACATGA  48
      ||||||||||||||||||||||||| ||||||| |||||||||| | |||
seq2  AAACCCTGTCTCGAAAAAACAAAAACCAAAAACAAAAAACAAAACCTTGA  50

seq1  C-GTATTGGCCATGGAGACAGAATGAGGAAAATACAGTTGCACGTTGGTA  97
      | ||||||||||| ||||||||||   |||||||| ||||||||||||||
seq2  CGGTATTGGCCATTGAGACAGAATAGAGAAAATACCGTTGCACGTTGGTA  100

seq1  TGACAACTAATAATCCTGCATCTATTGAAACATGCTATGAAAAGGGATGG  147
      |||||||| ||||| |||||   | |||||||||||||  ||| ||||||
seq2  TGACAACT-ATAAT-CTGCACTCAATGAAACATGCTATAGAAAAGGATGG  148

seq1  -AGAAGTGGCTCA-GTGGTTAAGA-GAGATGTCCACTCTTCCAGAGGACC  194
       |||||| ||||| |||||| ||| |||||||||||||||||||| ||||
seq2  AAGAAGTTGCTCAGGTGGTTTAGAGGAGATGTCCACTCTTCCAGA-GACC  197

seq1  TGAGTCTGGTTACCAGCACAATATGACT-CCAGCTCCTGGGGACTTGATG  243
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TGAGTCTGGTTACCAGCACAATATGACTCCCAGCTCCTGGGGACTTGAT-  246

seq1  CCTTTTTCTGGTCTCAGGTGGTACCTG-CACACATGGAG-CATATACTTA  291
      || ||||||| |||||||||||||||| ||||||||||| ||||||||||
seq2  CCCTTTTCTGTTCTCAGGTGGTACCTGCCACACATGGAGCCATATACTTA  296

seq1  CAGAGACATATACACATAAACAAAACTTTGTAAACATACATTGAGAATAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACATATACACATAAACAAAACTTTGTAAACATACATTGAGAATAT  346

seq1  AACTGTTGCTACAACTTCTGATGAGAATATGGCTGAGACTTTTCAGATTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGCTACAACTTCTGATGAGAATATGGCTGAGACTTTTCAGATTC  396

seq1  GCAGATAGTTTAGTTTCCCAGGTTTAGGCACAGGCTTCACTAGACAACAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGTTTAGTTTCCCAGGTTTAGGCACAGGCTTCACTAGACAACAT  446

seq1  T-CCTGGAA-GGGCTTAAACAGTCAAAGTGTGTTTTCCTCAGTTCCATTG  489
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAAGGGGCTTAAACAGTCAAAGTGTGTTTTCCTCAGTTCCATTG  496

seq1  ATATAGCCTAGATCCTGGCTGCACTCTAAACAAGCATTCATATCATCTAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCCTAGATCCTGGCTGCACTCTAAACAAGCATTCATATCATCTAG  546

seq1  TACCAAAAAGCACACCTCGAGAAAAGCAGCCTAGCTGAGTTCTTCTCCTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAAGCACACCTCGAGAAAAGCAGCCTAGCTGAGTTCTTCTCCTG  596

seq1  GGTAGATATAATGTCTGCCCTAGAGAAGGTTAAAACGTAATTGTAGAGCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATATAATGTCTGCCCTAGAGAAGGTTAAAACGTAATTGTAGAGCC  646

seq1  AAAACACAGTTACAAAATAAACATTGATTGAATAACAGTATTCACATAGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAGTTACAAAATAAACATTGATTGAATAACAGTATTCACATAGT  696

seq1  CAACCAAATGTATCAACCATTCAGCATCTAGTAGTTCACCCGACCAAAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAATGTATCAACCATTCAGCATCTAGTAGTTCACCCGACCAAAAA  746

seq1  CAACAATGTATTAAAATCAATCGGACTTTCTTCAACTGAGTTGGACTGAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGTATTAAAATCAATCGGACTTTCTTCAACTGAGTTGGACTGAA  796

seq1  GTCTAGAGTCAGAGATTACACATTCCAAAAAGAGATGTAAAACCATCGGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAGTCAGAGATTACACATTCCAAAAAGAGATGTAAAACCATCGGG  846

seq1  GCAGAACTTGTCACCAGAATTTCCTTCAAGTGACCCTCAGTCTCTAGCCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTTGTCACCAGAATTTCCTTCAAGTGACCCTCAGTCTCTAGCCT  896

seq1  TTAAGCTGAGGAAAGACTACAGGTATTAAAATATATAATGAAAGAAGAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGAGGAAAGACTACAGGTATTAAAATATATAATGAAAGAAGAAT  946

seq1  TGATAGGTGCAGTCCTATTCTTCTGCCTGGGGAGGAGATGGACATTGCCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGATAGGTGCAGTCCTATTCTTCTGCCTGGGGAGGAGATGGACATTG-CC  995

seq1  CCCCCCCACCCCTTGGGAATCATATTGGCTATTTTTCTGTCAACTCACCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCACCCCTTGGGAATCATATTGGCTATTTTTCTGTCAACTCACCA  1045

seq1  CAGCTAGAGTCTTTTGGGAGGAGGAATTC  1068
      |||||||||||||||||||||||||||||
seq2  CAGCTAGAGTCTTTTGGGAGGAGGAATTC  1074