BAC Information

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BAC

Clone NameB6Ng01-160M08
Chromosome5 (Build37)
Map Location 140,616,535 - 140,803,966
singlet/doubletdoublet
Overlap geneMad1l1, Ftsj2
Upstream geneHeatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270
Downstream geneNudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160M08.bB6Ng01-160M08.g
ACCDH954059DH954060
length687327
definitionDH954059|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M08, 5' end.DH954060|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,803,282 - 140,803,966)(140,616,535 - 140,616,850)
sequence
gaattcctccatcggctcacaggctgagccagggagacattgatgagtga
ctgacgtggcagggcccagccctgtgcgggtgctgccatcccttggcagg
tagcctgagttgtatgagaaagcggggtgagcaggactgaggaacaagcc
agtcatccataccccactccccgtctccagttgctgctgcctccaggttc
ccaccccgagaacccactttgatttccttcagtgatggactgtggttggg
atgagtgaggcaaagaaaccctttccttccaaggcttttaaatgctgaaa
acaaagcagtcttctctatcatgattttatttttctggcttttgtttact
tgtctgtttgtgaggttgagtgtcactataacccaggctggctatgagcc
cacagtcctcctgccttgcttcccaagtgctgggatggcaagtgtacact
gccacacctggctcacgccatgtttgaagagaatgttaggagagtgaagg
atataaaaggaaaaacaaaaaacagacaaactaggcagtggtggcacacg
cctttaatcccagcagaggctggaggagctctgtgacttgtgacttaaga
ggccagcctgggctacagagcgagttccaggacagccagggctacactaa
ataaataaaataaataaatgaaggagggagggagggt
tgtgattgactgggcacaactgtctctcagtgactcctgtgaaaatgcgg
caagtgtctgaatacatggccactctagacagcaaaggttgcatacccag
cataaatagcagagccacaggctgaggagaaaagccactagggctctgct
cacaggagcctaactcaccacagccatgataccagcacacctaggcccaa
aggaggaaggtcactgagggccagcctgcttcaagaggccagagtgccca
tgcataggaggaccaactgtaacaggaatctccaaggtgtgtatgttggg
gaggggggctgccttatcctgccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_140803282_140803966
seq2: B6Ng01-160M08.b_46_731 (reverse)

seq1  CCCTCCCTCCCTCCTTCATTTATTTA-TTTATTTATTTAGTGTAGCCCTG  49
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCTCCCTCCCTCCTTCATTTATTTATTTTATTTATTTAGTGTAGCCCTG  50

seq1  GCTGTCCTGGAACTCGCTCTGTAGCCCAGGCTGGCCTCTTAAGTCACAAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCGCTCTGTAGCCCAGGCTGGCCTCTTAAGTCACAAG  100

seq1  TCACAGAGCTCCTCCAGCCTCTGCTGGGATTAAAGGCGTGTGCCACCACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGCTCCTCCAGCCTCTGCTGGGATTAAAGGCGTGTGCCACCACT  150

seq1  GCCTAGTTTGTCTGTTTTTTGTTTTTCCTTTTATATCCTTCACTCTCCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTTGTCTGTTTTTTGTTTTTCCTTTTATATCCTTCACTCTCCTA  200

seq1  ACATTCTCTTCAAACATGGCGTGAGCCAGGTGTGGCAGTGTACACTTGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTTCAAACATGGCGTGAGCCAGGTGTGGCAGTGTACACTTGCC  250

seq1  ATCCCAGCACTTGGGAAGCAAGGCAGGAGGACTGTGGGCTCATAGCCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGGAAGCAAGGCAGGAGGACTGTGGGCTCATAGCCAGC  300

seq1  CTGGGTTATAGTGACACTCAACCTCACAAACAGACAAGTAAACAAAAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTATAGTGACACTCAACCTCACAAACAGACAAGTAAACAAAAGCC  350

seq1  AGAAAAATAAAATCATGATAGAGAAGACTGCTTTGTTTTCAGCATTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAAAATCATGATAGAGAAGACTGCTTTGTTTTCAGCATTTAAA  400

seq1  AGCCTTGGAAGGAAAGGGTTTCTTTGCCTCACTCATCCCAACCACAGTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGAAGGAAAGGGTTTCTTTGCCTCACTCATCCCAACCACAGTCC  450

seq1  ATCACTGAAGGAAATCAAAGTGGGTTCTCGGGGTGGGAACCTGGAGGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGAAGGAAATCAAAGTGGGTTCTCGGGGTGGGAACCTGGAGGCAG  500

seq1  CAGCAACTGGAGACGGGGAGTGGGGTATGGATGACTGGCTTGTTCCTCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACTGGAGACGGGGAGTGGGGTATGGATGACTGGCTTGTTCCTCAG  550

seq1  TCCTGCTCACCCCGCTTTCTCATACAACTCAGGCTACCTGCCAAGGGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCACCCCGCTTTCTCATACAACTCAGGCTACCTGCCAAGGGATG  600

seq1  GCAGCACCCGCACAGGGCTGGGCCCTGCCACGTCAGTCACTCATCAATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACCCGCACAGGGCTGGGCCCTGCCACGTCAGTCACTCATCAATGT  650

seq1  CTCCCTGGCTCAGCCTGTGAGCCGATGGAGGAATTC  685
      ||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGCTCAGCCTGTGAGCCGATGGAGGAATTC  686

seq1: chr5_140616535_140616850
seq2: B6Ng01-160M08.g_68_383

seq1  GAATTCTGTGATTGACTGGGCACAACTGTCTCTCAGTGACTCCTGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGATTGACTGGGCACAACTGTCTCTCAGTGACTCCTGTGAAA  50

seq1  ATGCGGCAAGTGTCTGAATACATGGCCACTCTAGACAGCAAAGGTTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGCAAGTGTCTGAATACATGGCCACTCTAGACAGCAAAGGTTGCAT  100

seq1  ACCCAGCATAAATAGCAGAGCCACAGGCTGAGGAGAAAAGCCACTAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCATAAATAGCAGAGCCACAGGCTGAGGAGAAAAGCCACTAGGGC  150

seq1  TCTGCTCACAGGAGCCTAACTCACCACAGCCATGATACCAGCACACCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCACAGGAGCCTAACTCACCACAGCCATGATACCAGCACACCTAG  200

seq1  GCCCAAAGGAGGAAGGTCACTGAGGGCCAGCCTGCTTCAAGAGGCCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGGAGGAAGGTCACTGAGGGCCAGCCTGCTTCAAGAGGCCAGAG  250

seq1  TGCCCATGCATAGGAGGACCAACTGTAACAGGAATCTCCAAGGTGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGCATAGGAGGACCAACTGTAACAGGAATCTCCAAGGTGTGTAT  300

seq1  GTTGGGGAGGGGGGCT  316
      ||||||||||||||||
seq2  GTTGGGGAGGGGGGCT  316