BAC Information

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BAC

Clone NameB6Ng01-160N06
Chromosome5 (Build37)
Map Location 42,990,138 - 43,114,478
singlet/doubletdoublet
Overlap genenone
Upstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588, EG636612
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160N06.bB6Ng01-160N06.g
ACCDH954100DH954101
length2541,078
definitionDH954100|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N06, 5' end.DH954101|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,990,138 - 42,990,391)(43,113,381 - 43,114,478)
sequence
gaattcttttcttctggtatagagtcaaataaacatcactcaaaatgaag
taagtgaggacaaaattaatataaaatatagttcatcactgattcatcca
ttcacacattcatttgcctatctacccattgaagaatacttctagacatt
agtgcagtttcctgaagagaattgtaataagatgtaaggcatttctacat
agtctacctaagcctatggattatatgttatatgaagtgttgggggaggg
tgaa
gaattcaaggttaaataatttttccaagatcaaacatctgtgttttgaga
aagaatctttatagtaatcttgttagttgctaacactgataatatttatt
tacttccaattgcatggtataattattagcattctgtctaaactctaccc
ccacaggtaggcctggcctataaaaggggctgcttgtcccccttttgtct
ctcttacactcttgctctcttgcctcttgcccctttactccccctctctt
tccattcccttccccctctctccacatggccatggccagtctccacatct
ctattctctcctcctctctctctgattttctctctctctctgctaccctc
ttaactcccctccccatgccctgaataaactctgttctatactacacctc
ccatgtgtatctggtccctcaggggaaagggatgcctgggcctgggccca
ctgaggcaccccctcccctcacaccccgccagaacatattcttatagctc
tttctctttttatgatcacaacaataattgttcattgaacgttttacttt
cacctggcaatgtaccatgaaatgtatatatttgtgttcttagctgtaaa
taagttccacttttcttttagcaagtgttcagagtatgtgtagtgttaca
cacacatactgttcatataagtatcagataactccagatatgctgttttc
tttttcaatttgggaaaaattcaaaggatatgaaattaattaaatacatc
tttgccataaccttttgggagaacttctgcctttcaaagctaaatgtttt
gataagaataaggcaaaagagttcaaaaacataataaactataagaatga
ctgaaattagtgatgaattttaccatccattagattcaagtgggtctgtc
actgccaaactacattttccacacgaaccttctatcatctagtacattat
tagaaactgttttttcttgctggcttatctccttctactttctactccct
tagccaggaacaaatataacattctcctacatcggttgcatctgacactg
acatgaatgtaagactactgtcatactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_42990138_42990391
seq2: B6Ng01-160N06.b_41_294

seq1  GAATTCTTTTCTTCTGGTATAGAGTCAAATAAACATCACTCAAAATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTTCTGGTATAGAGTCAAATAAACATCACTCAAAATGAAG  50

seq1  TAAGTGAGGACAAAATTAATATAAAATATAGTTCATCACTGATTCATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGGACAAAATTAATATAAAATATAGTTCATCACTGATTCATCCA  100

seq1  TTCACACATTCATTTGCCTATCTACCCATTGAAGAATACTTCTAGACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACATTCATTTGCCTATCTACCCATTGAAGAATACTTCTAGACATT  150

seq1  AGTGCAGTTTCCTGAAGAGAATTGTAATAAGATGTAAGGCATTTCTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGTTTCCTGAAGAGAATTGTAATAAGATGTAAGGCATTTCTACAT  200

seq1  AGTCTACCTAAGCCTATGGATTATATGTTATATGAAGTGTTGGGGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACCTAAGCCTATGGATTATATGTTATATGAAGTGTTGGGGGAGGG  250

seq1  TGAA  254
      ||||
seq2  TGAA  254

seq1: chr5_43113381_43114478
seq2: B6Ng01-160N06.g_66_1143 (reverse)

seq1  CAGTATGACAGGTAGTCCTTTACATATCATGTCAGTGCTCAGATGCACAC  50
      |||||||||| ||||||  |||||| ||||||||||| |||||||||  |
seq2  CAGTATGACA-GTAGTC--TTACAT-TCATGTCAGTG-TCAGATGCAACC  45

seq1  GATGTAAGGAGAAATGTTATAATTTTGTTCCTTGGCTAAGGGAAGTAGGA  100
      ||||| ||||| |||||||||  |||||||| |||||||||| |||||  
seq2  GATGT-AGGAG-AATGTTATA--TTTGTTCC-TGGCTAAGGG-AGTAG--  87

seq1  AAAGTAGGAAAGGAAGATAAGCCAGCAAGAAAAAAACAAGTGTCTAATTA  150
      |||||||  |||| |||||||||||||||||||||   ||| ||||| ||
seq2  AAAGTAG--AAGG-AGATAAGCCAGCAAGAAAAAA--CAGTTTCTAA-TA  131

seq1  ATGTACTAGATGATAGAAGGTTCGTGTGGAAAATGTAGTTTGGCAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTAGATGATAGAAGGTTCGTGTGGAAAATGTAGTTTGGCAGTGAC  181

seq1  AGACCCACTTGAATCTAATGGATGGTAAAATTCATCACTAATTTCAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACTTGAATCTAATGGATGGTAAAATTCATCACTAATTTCAGTCA  231

seq1  TTCTTATAGTTTATTTATGTTTTTGAACTCTTTTGCCTTATTCTTATCAA  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAGTTTA-TTATGTTTTTGAACTCTTTTGCCTTATTCTTATCAA  280

seq1  AACATTTAGCTTTGAAAGGCAGAAGTTCTCCCAAAAGGTTATGGCAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAGCTTTGAAAGGCAGAAGTTCTCCCAAAAGGTTATGGCAAAGA  330

seq1  TGTATTTAATTAATTTCATATCCTTTGAATTTTTCCCAAATTGAAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAATTAATTTCATATCCTTTGAATTTTTCCCAAATTGAAAAAGA  380

seq1  AAACAGCATATCTGGAGTTATCTGATACTTATATGAACAGTATGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATATCTGGAGTTATCTGATACTTATATGAACAGTATGTGTGTG  430

seq1  TAACACTACACATACTCTGAACACTTGCTAAAAGAAAAGTGGAACTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTACACATACTCTGAACACTTGCTAAAAGAAAAGTGGAACTTATT  480

seq1  TACAGCTAAGAACACAAATATATACATTTCATGGTACATTGCCAGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTAAGAACACAAATATATACATTTCATGGTACATTGCCAGGTGAA  530

seq1  AGTAAAACGTTCAATGAACAATTATTGTTGTGATCATAAAAAGAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACGTTCAATGAACAATTATTGTTGTGATCATAAAAAGAGAAAGA  580

seq1  GCTATAAGAATATGTTCTGGCGGGGTGTGAGGGGAGGGGGTGCCTCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAGAATATGTTCTGGCGGGGTGTGAGGGGAGGGGGTGCCTCAGTG  630

seq1  GGCCCAGGCCCAGGCATCCCTTTCCCCTGAGGGACCAGATACACATGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGCCCAGGCATCCCTTTCCCCTGAGGGACCAGATACACATGGGA  680

seq1  GGTGTAGTATAGAACAGAGTTTATTCAGGGCATGGGGAGGGGAGTTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGTATAGAACAGAGTTTATTCAGGGCATGGGGAGGGGAGTTAAGA  730

seq1  GGGTAGCAGAGAGAGAGAGAAAATCAGAGAGAGAGGAGGAGAGAATAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCAGAGAGAGAGAGAAAATCAGAGAGAGAGGAGGAGAGAATAGAG  780

seq1  ATGTGGAGACTGGCCATGGCCATGTGGAGAGAGGGGGAAGGGAATGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGACTGGCCATGGCCATGTGGAGAGAGGGGGAAGGGAATGGAAA  830

seq1  GAGAGGGGGAGTAAAGGGGCAAGAGGCAAGAGAGCAAGAGTGTAAGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGGAGTAAAGGGGCAAGAGGCAAGAGAGCAAGAGTGTAAGAGAG  880

seq1  ACAAAAGGGGGACAAGCAGCCCCTTTTATAGGCCAGGCCTACCTGTGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGGGGACAAGCAGCCCCTTTTATAGGCCAGGCCTACCTGTGGGG  930

seq1  GTAGAGTTTAGACAGAATGCTAATAATTATACCATGCAATTGGAAGTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTTAGACAGAATGCTAATAATTATACCATGCAATTGGAAGTAAA  980

seq1  TAAATATTATCAGTGTTAGCAACTAACAAGATTACTATAAAGATTCTTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTATCAGTGTTAGCAACTAACAAGATTACTATAAAGATTCTTTC  1030

seq1  TCAAAACACAGATGTTTGATCTTGGAAAAATTATTTAACCTTGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACACAGATGTTTGATCTTGGAAAAATTATTTAACCTTGAATTC  1078