BAC Information

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BAC

Clone NameB6Ng01-160P01
Chromosome5 (Build37)
Map Location 50,817,241 - 51,015,087
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P01.bB6Ng01-160P01.g
ACCDH954186DH954187
length1,090565
definitionDH954186|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P01, 5' end.DH954187|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,013,988 - 51,015,087)(50,817,241 - 50,817,811)
sequence
gaattcaaattatccatagttattgttctgtttagatcaatagctttaca
gtcaggaagaaaaatagccagggtgttaaatgacagctgagtcttgatat
tcatgttccttagcatctttctaggcctctgtagtttctaagaagtcagg
tcttggtaggagatcttgagcaaaagccaaagagaggcaagaacaaggca
gaagaacactgagcccttaattacaagttggagaacaggagagaaacagg
ctagaagcatggcctggcaaacaactgacgctgccttttatttccaaaca
cacatccctctcacatataccttttgagccctttatgattattttctatt
gttttatcattttctgaagacataataagtggcttaagaaaaaaagtagt
ttgggactcatatattattaaatactttataaagatgttaatataattgt
taataatatccatgttatataaagacaaatttttacttttcccatttaac
aagtgatgcataccgtttcatttactttaaattaattatgtaataaaagc
atgagttgtcaacaaataaattcaagaatgacacatactggttttgtttg
gagaactaatgggttttaaaatgtaaattaaaatttaactgtgccttgtc
attgcacacaaaacaaaaacaaccttgtggtgatttaatttggaactcag
gaaactgcatttcagagaaacaacggatttattttttaacgtaaatttat
tttttaatgtgtttataattttattttctaccttattaaaagtaaatgtt
gtaggttgccctatgccaatagcttgcatatataagattaagaacatgcc
agtgttaatccatattccatataataatggccaaattgtattcagttgtc
actttgttttgactaccaagtatgttatgacataaagctagactatattc
gaccacacttgtccctgatggaagccacagttttaaaaagaaagaaattt
aaaactcacaagccaaaatctaattaagtacttctcgatccctgtagacc
ttcctcattcctgataagggaatgcttttccagagtggac
agattcttcaagagaccctatctcaataaaaaaggtgaacagtaatggaa
taaagactccatgacaactttgggggtccacaggcatgtataaatagcag
tatgtgctcctgtatgcaccacacacccaaacttgtgttcacacatacac
atataattcatatgaaaatttttctaggttcagtgaatgacaagttggaa
gaaagaaggaaaggaaggggagaattaaggaaaggattgaacgtggatat
gaaggggtgtaagaggaagagagataggtagaaagtcagaatttttcaaa
tttccttgtatttcctcaccttgtatttccccaggctttcattgtttact
ctgcatttgtggtctaatttctcagatcttattaaagtttcagtttgttt
caaactacttactcttatttttactagccttgctttatctcatttctgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtcctacccctgtatgaaaatgact
cttactaattaggctacaaacttcctgtgttagcagtttataagccctca
gtactgatagggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51013988_51015087
seq2: B6Ng01-160P01.b_45_1134 (reverse)

seq1  GTCCACTTCTGGAAATGCATTCCCTTTATCAGGATTTGAGAAAGTCTTAC  50
      |||||| |||||||| |||||||| |||||||||  |||| |||   |||
seq2  GTCCAC-TCTGGAAAAGCATTCCC-TTATCAGGA-ATGAGGAAGGTCTAC  47

seq1  AGAGATCGAGAAGTACTTAATTAGGATTTTGCTTTGTGAGTTTTAAATGT  100
      || |||||||||||||||||||| |||||||  ||||||||||||||| |
seq2  AGGGATCGAGAAGTACTTAATTA-GATTTTGGCTTGTGAGTTTTAAATTT  96

seq1  CTTTCTTTTTAAAACTGTGGCTTTCCATCCAGGGACAAGGTGTGTGTCTG  150
      ||||||||||||||||||||| |||||| ||||||||| ||||| ||| |
seq2  CTTTCTTTTTAAAACTGTGGC-TTCCAT-CAGGGACAA-GTGTG-GTC-G  141

seq1  AATATAGTCTAGCTTTATGTCATAACATACTTGGTAGTCAAAAACAAAGT  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATATAGTCTAGCTTTATGTCATAACATACTTGGTAGTC-AAAACAAAGT  190

seq1  GACAACTGAATACAATTTGGCCA-TATTATATGGAATATGGATTAAACAC  249
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  GACAACTGAATACAATTTGGCCATTATTATATGGAATATGGATT-AACAC  239

seq1  TGGCATGTTCTTAATCTTATATATGCAAGCTATTGGCATAGGGCAACCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTTCTTAATCTTATATATGCAAGCTATTGGCATAGGGCAACCTA  289

seq1  CAACATTTACTTTTAATAAGGTAGAAAATAAAATTATAAACACATTAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTACTTTTAATAAGGTAGAAAATAAAATTATAAACACATTAAAA  339

seq1  AATAAATTTACGTTAAAAAATAAATCCGTTGTTTCTCTGAAATGCAGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTACGTTAAAAAATAAATCCGTTGTTTCTCTGAAATGCAGTTT  389

seq1  CCTGAGTTCCAAATTAAATCACCACAAGGTTGTTTTTGTTTTGTGTGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCCAAATTAAATCACCACAAGGTTGTTTTTGTTTTGTGTGCAA  439

seq1  TGACAAGGCACAGTTAAATTTTAATTTACATTTTAAAACCCATTAGTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGCACAGTTAAATTTTAATTTACATTTTAAAACCCATTAGTTCT  489

seq1  CCAAACAAAACCAGTATGTGTCATTCTTGAATTTATTTGTTGACAACTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAACCAGTATGTGTCATTCTTGAATTTATTTGTTGACAACTCA  539

seq1  TGCTTTTATTACATAATTAATTTAAAGTAAATGAAACGGTATGCATCACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATTACATAATTAATTTAAAGTAAATGAAACGGTATGCATCACT  589

seq1  TGTTAAATGGGAAAAGTAAAAATTTGTCTTTATATAACATGGATATTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATGGGAAAAGTAAAAATTTGTCTTTATATAACATGGATATTATT  639

seq1  AACAATTATATTAACATCTTTATAAAGTATTTAATAATATATGAGTCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTATATTAACATCTTTATAAAGTATTTAATAATATATGAGTCCCA  689

seq1  AACTACTTTTTTTCTTAAGCCACTTATTATGTCTTCAGAAAATGATAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTTTTTCTTAAGCCACTTATTATGTCTTCAGAAAATGATAAAA  739

seq1  CAATAGAAAATAATCATAAAGGGCTCAAAAGGTATATGTGAGAGGGATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAAAATAATCATAAAGGGCTCAAAAGGTATATGTGAGAGGGATGT  789

seq1  GTGTTTGGAAATAAAAGGCAGCGTCAGTTGTTTGCCAGGCCATGCTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGAAATAAAAGGCAGCGTCAGTTGTTTGCCAGGCCATGCTTCTA  839

seq1  GCCTGTTTCTCTCCTGTTCTCCAACTTGTAATTAAGGGCTCAGTGTTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTCTCTCCTGTTCTCCAACTTGTAATTAAGGGCTCAGTGTTCTT  889

seq1  CTGCCTTGTTCTTGCCTCTCTTTGGCTTTTGCTCAAGATCTCCTACCAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGTTCTTGCCTCTCTTTGGCTTTTGCTCAAGATCTCCTACCAAG  939

seq1  ACCTGACTTCTTAGAAACTACAGAGGCCTAGAAAGATGCTAAGGAACATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTTCTTAGAAACTACAGAGGCCTAGAAAGATGCTAAGGAACATG  989

seq1  AATATCAAGACTCAGCTGTCATTTAACACCCTGGCTATTTTTCTTCCTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAGACTCAGCTGTCATTTAACACCCTGGCTATTTTTCTTCCTGA  1039

seq1  CTGTAAAGCTATTGATCTAAACAGAACAATAACTATGGATAATTTGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGCTATTGATCTAAACAGAACAATAACTATGGATAATTTGAATT  1089

seq1  C  1100
      |
seq2  C  1090

seq1: chr5_50817241_50817811
seq2: B6Ng01-160P01.g_66_636

seq1  GAATTCAGATTCTTCAAGAGACCCTATCTCAATAAAAAAGGTGAACAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCTTCAAGAGACCCTATCTCAATAAAAAAGGTGAACAGTA  50

seq1  ATGGAATAAAGACTCCATGACAACTTTGGGGGTCCACAGGCATGTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAAAGACTCCATGACAACTTTGGGGGTCCACAGGCATGTATAAA  100

seq1  TAGCAGTATGTGCTCCTGTATGCACCACACACCCAAACTTGTGTTCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTATGTGCTCCTGTATGCACCACACACCCAAACTTGTGTTCACAC  150

seq1  ATACACATATAATTCATATGAAAATTTTTCTAGGTTCAGTGAATGACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATATAATTCATATGAAAATTTTTCTAGGTTCAGTGAATGACAAG  200

seq1  TTGGAAGAAAGAAGGAAAGGAAGGGGAGAATTAAGGAAAGGATTGAACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAAAGAAGGAAAGGAAGGGGAGAATTAAGGAAAGGATTGAACGT  250

seq1  GGATATGAAGGGGTGTAAGAGGAAGAGAGATAGGTAGAAAGTCAGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGAAGGGGTGTAAGAGGAAGAGAGATAGGTAGAAAGTCAGAATTT  300

seq1  TTCAAATTTCCTTGTATTTCCTCACCTTGTATTTCCCCAGGCTTTCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTCCTTGTATTTCCTCACCTTGTATTTCCCCAGGCTTTCATTG  350

seq1  TTTACTCTGCATTTGTGGTCTAATTTCTCAGATCTTATTAAAGTTTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTGCATTTGTGGTCTAATTTCTCAGATCTTATTAAAGTTTCAGT  400

seq1  TTGTTTCAAACTACTTACTCTTATTTTTACTAGCCTTGCTTTATCTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCAAACTACTTACTCTTATTTTTACTAGCCTTGCTTTATCTCATT  450

seq1  TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTACCCCTGTATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTACCCCTGTATGAAA  500

seq1  ATGACTCTTACTAATTAGGCTACAAACTTCCTGTGTTAGCAGTTTATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTTACTAATTAGGCTACAAACTTCCTGTGTTAGCAGTTTATAAG  550

seq1  CCCTCAGTACTGAGAGGGACT  571
      ||||||||||||| |||||||
seq2  CCCTCAGTACTGATAGGGACT  571