BAC Information

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BAC

Clone NameB6Ng01-160P12
Chromosome5 (Build37)
Map Location 149,738,139 - 149,890,718
singlet/doubletdoublet
Overlap geneKatnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1
Upstream geneC130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869
Downstream geneEG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P12.bB6Ng01-160P12.g
ACCDH954208DH954209
length1,1661,160
definitionDH954208|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P12, 5' end.DH954209|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,738,139 - 149,739,318)(149,889,547 - 149,890,718)
sequence
gaattctaagtggcatctcgaaatcacacagaacccagtcctcccaatgt
ctgtggtaactttgtgatagaatgtctgtggtaactctgtagtaatggaa
gtggtgagaagaggtgcaggaatggctgctgacgtctctgcctgtgactc
cagagatacagaatgagacatcacatcaatggattaagaccagaagagat
ccaggccctgtccaaggaggaactccaaggacagatgcctgtcacctgag
gggacttggagttggctcttaagaaaatcgccaagtctgtctcagcagca
gacctggagaagcacgaaaagtggatggttgagtttgggtctgcgtgatt
ggtcagctcttccatctctgggagttttctttatgaaatataaagacatt
cctgaaattataaaaccatctagaggtacagagaactatagttgagaagc
aaggtatgctcgtacagtctgctggcttcaggctaccaaacctcatacgt
gtggtacagagtaagcaagccagtggctggggtcgaagggcctcaccagg
actacttcctactgattaggggtgtcaagtttcttggggcaagttccatc
tttgccatcaggatatctaatttcttgttgttgtttcttctttacgtagg
aacaattacttaacaagtggtgatcaagaaccaaccccacctcttggagt
cttagcatttatatgccctctgaaaagtccccagaattccaaacatcaca
cagtcacggaaactatctggctgttggcaaaaatcacatcccttgtacag
catgaggcaaatcgcagtcaaccgctgtggacaatctgaagcagcccaat
atcccaaacctgggattaaacaaaacaatttttatattttctatgtaaat
ccatgtttaaaaaaaacaccaaaattctcactacacataataaaaagagg
aaatcatcctgagccatgcttatatcagcatcctgagacagacaggtgag
ctcaggacagcctggtttacacagtggagttctagctagccaaactacac
agttgagcctgtctcttaaacagaaaaatggtgataaatcaatcagtatt
ttaaaatagaacgagaatatccgacccctcaattaagtcaacgggagatt
gttcgaagttcataaa
gaattccatggccctcagcattcctcgagtgactggaactggcctgaatc
gtcagtgtggaaggaatgtggcaaatgaggctggccatgagtcacttgag
ttccaagggactagacggtctgaggaagaaacccaaatgagttcgtgtag
gcaggtcttcgggccagcaccctgcttgcctctcaccggctattcagcgc
cagaccatggttgctttacaagtcagtctcaagctttccaagttatagga
cacaatgctactggcttaccctgactgtacattatttagggcctggggaa
attcaaagcgccaactgctcttgcagagaacccgagttctggtcccaacc
cccacatcaggcagatgctggctgcctgcatcttctgcagaacaaacatt
agctttctctctgacagaacgctggacctgtgtcccgaagttccacagag
ttcttaaaccactactcaatggtgtaagaaagagcaaagagtgctttttc
ttttaaaaaattattatatttattctcagttatgtgtgcatgtgtctctg
cacgtacctgaggtatcggatctcctagaactgagattacaggccacctg
acacaggtgctgaagggcaggttgtgtgtttaactgctgagcaatcttcc
cagcctccccgggtggttttttaaatgttagtgtagctcaatacagagca
tctgcctggcttctctctccaatccttaaacaaacaaacaaacaaacaaa
caaacacctattgtaagagtagaccaggttctaaggaattctgctatatt
ctgtatagttctaggttcgtaggcttgccctacctgtgctttccatgact
gaataatccatcacagccctcctcctcctccccttcctcctccccccctt
tcagtgtgacccactgcaggctctctgtcctttctctgttactttgactt
cactagagatctctagggagactgtctctgagaatggtggtatgtgggac
aactggagcctcctgtcattgcctggagatacctccaccacgtagtgact
tcagatgaccgcagcagcccgggattgctgtacccaacacatctctcaag
ggtcctatgcatcctaagaaggaatcaatagtgcatttatgtttgacgag
catccagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_149738139_149739318
seq2: B6Ng01-160P12.b_48_1213

seq1  GAATTCTAAGTGGCATCTCGAAATCACACAGAACCCAGTCCTCCCAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTGGCATCTCGAAATCACACAGAACCCAGTCCTCCCAATGT  50

seq1  CTGTGGTAACTTTGTGATAGAATGTCTGTGGTAACTCTGTAGTAATGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTAACTTTGTGATAGAATGTCTGTGGTAACTCTGTAGTAATGGAA  100

seq1  GTGGTGAGAAGAGGTGCAGGAATGGCTGCTGACGTCTCTGCCTGTGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGAAGAGGTGCAGGAATGGCTGCTGACGTCTCTGCCTGTGACTC  150

seq1  CAGAGATACAGAATGAGACATCACATCAATGGATTAAGACCAGAAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATACAGAATGAGACATCACATCAATGGATTAAGACCAGAAGAGAT  200

seq1  CCAGGCCCTGTCCAAGGAGGAACTCCAAGGACAGATGCCTGTCACCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCTGTCCAAGGAGGAACTCCAAGGACAGATGCCTGTCACCTGAG  250

seq1  GGGACTTGGAGTTGGCTCTTAAGAAAATCGCCAAGTCTGTCTCAGCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGGAGTTGGCTCTTAAGAAAATCGCCAAGTCTGTCTCAGCAGCA  300

seq1  GACCTGGAGAAGCACGAAAAGTGGATGGTTGAGTTTGGGTCTGCGTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAGAAGCACGAAAAGTGGATGGTTGAGTTTGGGTCTGCGTGATT  350

seq1  GGTCAGCTCTTCCATCTCTGGGAGTTTTCTTTATGAAATATAAAGACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCTCTTCCATCTCTGGGAGTTTTCTTTATGAAATATAAAGACATT  400

seq1  CCTGAAATTATAAAACCATCTAGAGGTACAGAGAACTATAGTTGAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATTATAAAACCATCTAGAGGTACAGAGAACTATAGTTGAGAAGC  450

seq1  AAGGTATGCTCGTACAGTCTGCTGGCTTCAGGCTACCAAACCTCATACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGCTCGTACAGTCTGCTGGCTTCAGGCTACCAAACCTCATACGT  500

seq1  GTGGTACAGAGTAAGCAAGCCAGTGGCTGGGGTCGAAGGGCCTCACCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACAGAGTAAGCAAGCCAGTGGCTGGGGTCGAAGGGCCTCACCAGG  550

seq1  ACTACTTCCTACTGATTAGGGGTGTCAAGTTTCTTGGGGCAAGTTCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCCTACTGATTAGGGGTGTCAAGTTTCTTGGGGCAAGTTCCATC  600

seq1  TTTGCCATCAGGATATCTAATTTCTTGTTGTTGTTTCTTCTTTACGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATCAGGATATCTAATTTCTTGTTGTTGTTTCTTCTTTACGTAGG  650

seq1  AACAATTACTTAACAAGTGGTGATCAAGAACCAACCCCACCTCTTGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTACTTAACAAGTGGTGATCAAGAACCAACCCCACCTCTTGGAGT  700

seq1  CTTAGCATTTATATGCCCTCTGAAAAGTCCCCAGAATTCCAAACATCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATTTATATGCCCTCTGAAAAGTCCCCAGAATTCCAAACATCACA  750

seq1  CAGTCACGGAAACTATCTGGCTGTTGGCAAAAATCACATCCCTTGTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACGGAAACTATCTGGCTGTTGGCAAAAATCACATCCCTTGTACAG  800

seq1  CATGAGGCAAATCGCAGTCAACCGCTGTGGACAATCTGAAGCAGCCCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGCAAATCGCAGTCAACCGCTGTGGACAATCTGAAGCAGCCCAAT  850

seq1  ATCCCAAACCTGGGATTAAAACAAAAACAATTTTTATA-TTTCTATGTAA  899
      ||||||||||||||||||||   ||||||||||||||| |||||||||||
seq2  ATCCCAAACCTGGGATTAAA--CAAAACAATTTTTATATTTTCTATGTAA  898

seq1  ATTCCATGTTTAAAAAAAACACCAAAATTCTCACTACACATAATAAAAAG  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TCCATGTTTAAAAAAAACACCAAAATTCTCACTACACATAATAAAAAG  947

seq1  AGGAAATCATCCTGAGCCATGCTTAATATCAGCATCCTGAGACAGACAGG  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGAAATCATCCTGAGCCATGCTT-ATATCAGCATCCTGAGACAGACAGG  996

seq1  TGAGCTCCAGGACAGCCTGGTTTACACAGT-GAGTTCTAGCTAGCCAAAA  1048
      |||||| ||||||||||||||||||||||| ||||||||||||||| |||
seq2  TGAGCT-CAGGACAGCCTGGTTTACACAGTGGAGTTCTAGCTAGCC-AAA  1044

seq1  CTACACAGTGAAGCCTGGTCTCTAAAACAAAGAAAAATGTGCATAAATCA  1098
      |||||||||  ||||| |||||| ||||  |||||||||   ||||||||
seq2  CTACACAGTTGAGCCT-GTCTCTTAAAC--AGAAAAATGGTGATAAATCA  1091

seq1  ATCAGGTATTTTTAAAAAATAGAAACAGAATACAGAACACTTCAGTGTAG  1148
      |||| |||||||   |||||||||  ||||||    || | ||| |  ||
seq2  ATCA-GTATTTT---AAAATAGAACGAGAATATCCGACCCCTCAATTAAG  1137

seq1  TCAAAAGGAGATTGTTCAGAAAGTTCAATAAA  1180
      ||||  |||||||||||   |||||| |||||
seq2  TCAACGGGAGATTGTTC--GAAGTTC-ATAAA  1166

seq1: chr5_149889547_149890718
seq2: B6Ng01-160P12.g_69_1228 (reverse)

seq1  GGACTGGATGCCCTGTCAAAAACATTAAAATGCACTTATTTGAACTCCTT  50
      ||||||||||| | |||  ||||||  |||||||| ||||   | |||||
seq2  GGACTGGATGCTC-GTC--AAACAT--AAATGCAC-TATT--GATTCCTT  42

seq1  CTTAGGATGCATAAGGGGCCTTCTGAGATGTGTTGGGTACAGCAAT-CCG  99
      |||||||||||| |||  ||||  |||||||||||||||||||||| |||
seq2  CTTAGGATGCAT-AGGACCCTTGAGAGATGTGTTGGGTACAGCAATCCCG  91

seq1  GGCTGCTGCTGTCATCTGAGGTCCACTACGTGGTGGAGGTATCTTCAGGC  149
      ||||||||| ||||||||| || ||||||||||||||||||||| |||||
seq2  GGCTGCTGCGGTCATCTGAAGT-CACTACGTGGTGGAGGTATCTCCAGGC  140

seq1  AATGAACAGGAGGCTCCAG-TGTCCCACATACCACCATTCTCAGAGACAG  198
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATG-ACAGGAGGCTCCAGTTGTCCCACATACCACCATTCTCAGAGACAG  189

seq1  TCTCCCTAGAGATTCTCTAAGTGAAGTCAAAGTAACAGAGGAAAGGACAG  248
      |||||||||||| ||||| |||||||||||||||||||| ||||||||||
seq2  TCTCCCTAGAGA-TCTCT-AGTGAAGTCAAAGTAACAGA-GAAAGGACAG  236

seq1  AGAGCCTGCAGTGGGTCACACTGGAAGGGGGGGAGGAGGAAGGGGAGGAG  298
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAGCCTGCAGTGGGTCACACTGAAAGGGGGGGAGGAGGAAGGGGAGGAG  286

seq1  GAGGAGGGCTGTGATGGATTATTCAGTCATGGAAAGCACAGGTAGGGCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGCTGTGATGGATTATTCAGTCATGGAAAGCACAGGTAGGGCAA  336

seq1  GCCTACGAACCTAGAACTATAACAGAATATAGCAGAATTCCTTAGAACCT  398
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCTACGAACCTAGAACTAT-ACAGAATATAGCAGAATTCCTTAGAACCT  385

seq1  GGTCTACTCTTACAATAGGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTCTTACAATAGGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAA  435

seq1  GGATTGGAGAGAGAAGCCAGGCAGATGCTCTGTATTGAGCTACACTAACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGAGAGAGAAGCCAGGCAGATGCTCTGTATTGAGCTACACTAACA  485

seq1  TTTAAAAAACCA-CCGGGGAGGCTGGGAAGATTGCTCAGCAGTTAAACAC  547
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAACCACCCGGGGAGGCTGGGAAGATTGCTCAGCAGTTAAACAC  535

seq1  ACAACCTGCCCTTCAGCACCTGTGTCAGGTGGCCTGTAATCTCAGTTCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTGCCCTTCAGCACCTGTGTCAGGTGGCCTGTAATCTCAGTTCTA  585

seq1  GGAGATCCGATACCTCAGGTACGTGCAGAGACACATGCACACATAACTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCCGATACCTCAGGTACGTGCAGAGACACATGCACACATAACTGA  635

seq1  GAATAAATATAATAATTTTTTAAAAGAAAAAGCACTCTTTGCTCTTTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATATAATAATTTTTTAAAAGAAAAAGCACTCTTTGCTCTTTCTT  685

seq1  ACACCATTGAGTAGTGGTTTAAGAACTCTGTGGAACTTCGGGACACAGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTGAGTAGTGGTTTAAGAACTCTGTGGAACTTCGGGACACAGGT  735

seq1  CCAGCGTTCTGTCAGAGAGAAAGCTAATGTTTGTTCTGCAGAAGATGCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGTTCTGTCAGAGAGAAAGCTAATGTTTGTTCTGCAGAAGATGCAG  785

seq1  GCAGCCAGCATCTGCCTGATGTGGGGGTTGGGACCAGAACTCGGGTTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGCATCTGCCTGATGTGGGGGTTGGGACCAGAACTCGGGTTCTC  835

seq1  TGCAAGAGCAGTTGGCGCTTTGAATTTCCCCAGGCCCTAAATAATGTACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGCAGTTGGCGCTTTGAATTTCCCCAGGCCCTAAATAATGTACA  885

seq1  GTCAGGGTAAGCCAGTAGCATTGTGTCCTATAACTTGGAAAGCTTGAGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGTAAGCCAGTAGCATTGTGTCCTATAACTTGGAAAGCTTGAGAC  935

seq1  TGACTTGTAAAGCAACCATGGTCTGGCGCTGAATAGCCGGTGAGAGGCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTAAAGCAACCATGGTCTGGCGCTGAATAGCCGGTGAGAGGCAA  985

seq1  GCAGGGTGCTGGCCCGAAGACCTGCCTACACGAACTCATTTGGGTTTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTGCTGGCCCGAAGACCTGCCTACACGAACTCATTTGGGTTTCTT  1035

seq1  CCTCAGACCGTCTAGTCCCTTGGAACTCAAGTGACTCATGGCCAGCCTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACCGTCTAGTCCCTTGGAACTCAAGTGACTCATGGCCAGCCTCA  1085

seq1  TTTGCCACATTCCTTCCACACTGACGATTCAGGCCAGTTCCAGTCACTCG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACATTCCTTCCACACTGACGATTCAGGCCAGTTCCAGTCACTCG  1135

seq1  AGGAATGCTGAGGGCCATGGAATTC  1172
      |||||||||||||||||||||||||
seq2  AGGAATGCTGAGGGCCATGGAATTC  1160