BAC Information

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BAC

Clone NameB6Ng01-160P20
Chromosome5 (Build37)X (Build37)
Map Location 108,581,226 - 108,582,285105,554,603 - 105,555,090
singlet/doubletsingletsinglet
Overlap geneCcdc18
Upstream geneTgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, EG633606
Downstream geneLOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P20.bB6Ng01-160P20.g
ACCDH954224DH954225
length1,062914
definitionDH954224|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P20, 5' end.DH954225|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,581,226 - 108,582,285)(105,554,603 - 105,555,090)
sequence
gaattcaccttcagccttgacagcccagggagctcgtcttttaaaataaa
gtaattcaaagagtgctggtgatatacctcagaacatcgttaggatgtac
agctaggttcagtcctcagtgccacaaacaaactaatacatgaataggca
gcattgtcttcagtaggtaagtctctgcttcatatgcacttaccctccta
cacactactgtgatcatggaagttacgttttcacgtaagtccatttgtaa
gagcatttatacagaaacatttgttatttgttaggcagtattttatagtg
gaaaatgtttagatttgggagtcagattttacctctcgtctttattatct
tggaaaaccatctaatttttaaaacttcagcttttttatctattaagttg
ctattgccttggtatgcacaagaaaaagaaacatgtaaaataacgttatg
tagtaaagtacttacaaattttaattattatgtaaaatttgtggtttagt
accctaaaattcacactcactcagataatctttgtatttgggtatttaaa
gagataacaatatgggaaaaccagattttagaatataacagctaaaaact
ataaaaggagagctgctagtttccctctgcagtacttagataagagatgg
gtaactaaccctaattctttccttttgtctacttttcccttcccttcctt
cccctccttgccttccctttctttcttcttttcttttctttcttcctttt
gggaagggaaataaatggggcacatacagatgatgacacatactttgaac
ttaaaaagtaaaattaataaatattaaaaaaggagaaaaaactaaaaaaa
aaaaaattacagcttgaagagttgaacattcacaagtaaaaatgtttatg
cagagccaggcaccggggccacatctttaattctagcacttgggaatgca
aaggcagaaaatctctgttccagccagtctgttgtacctatatatagaag
ttcaggaacagcatgactacatgaagggacattgctccacaaaacaaaca
aaccaaaccaaa
gaattcctgatctttccaaaacttatcatgaatagtgttggattttgtca
aatgctttctcagcatctaacgagatgatcatgtggtttttgtctttgaa
tttgtttttataatggattacgttgatggatttccgtatattaaaccatc
cctgcatccctgggatgaagcctatttggacaggatggattatcgttttg
atgtgttctcggattgggttagcaataactttattgagtatttttgcgtc
gatattcataagggaaattggtctgaagttctcttctttgttgggtcttt
ctgtggtttaggtatcagagtaattgtggcttcatagattgaatagggta
gagtcccttctgtttctattttgtggaatagtttgaggagagttggaatt
aggttttctttgaaggtctgatagaactctgcactaaacccatctgtcct
gggcttcttttggttgggagactattaatgactaatagctaggtttttaa
ctccatttcatttgtcaaaataatgggaggcatgaaaggtgtacctaata
ttccctaaattaatgttgataggatccaaatttatatatttttcagttta
ttatttttttaattactaaaaagcagaggttaaacttttctactatggtt
gtggactttctttctttctttctttctaattctgctaaagtctggtgttt
gagatgtatacatttaagagaatatcttcaggtacaattaggaaacatcc
tttgtctatgatgacaacacatcttttgggtgtacactttgtctgatact
aacatagcccctgaagttttcttatgcttattgtttgatcaatcctactg
tttgcagcataatagtttttcttctatttaaatacatcaaattgggctgg
gtgtggtggcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108581226_108582285
seq2: B6Ng01-160P20.b_45_1106

seq1  GAATTCACCTTCAGCCTTGACAGCCCAGGGAGCTCGTCTTTTAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTCAGCCTTGACAGCCCAGGGAGCTCGTCTTTTAAAATAAA  50

seq1  GTAATTCAAAGAGTGCTGGTGATATACCTCAGAACATCGTTAGGATGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCAAAGAGTGCTGGTGATATACCTCAGAACATCGTTAGGATGTAC  100

seq1  AGCTAGGTTCAGTCCTCAGTGCCACAAACAAACTAATACATGAATAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGTTCAGTCCTCAGTGCCACAAACAAACTAATACATGAATAGGCA  150

seq1  GCATTGTCTTCAGTAGGTAAGTCTCTGCTTCATATGCACTTACCCTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTCTTCAGTAGGTAAGTCTCTGCTTCATATGCACTTACCCTCCTA  200

seq1  CACACTACTGTGATCATGGAAGTTACGTTTTCACGTAAGTCCATTTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTACTGTGATCATGGAAGTTACGTTTTCACGTAAGTCCATTTGTAA  250

seq1  GAGCATTTATACAGAAACATTTGTTATTTGTTAGGCAGTATTTTATAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTATACAGAAACATTTGTTATTTGTTAGGCAGTATTTTATAGTG  300

seq1  GAAAATGTTTAGATTTGGGAGTCAGATTTTACCTCTCGTCTTTATTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTTAGATTTGGGAGTCAGATTTTACCTCTCGTCTTTATTATCT  350

seq1  TGGAAAACCATCTAATTTTTAAAACTTCAGCTTTTTTATCTATTAAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACCATCTAATTTTTAAAACTTCAGCTTTTTTATCTATTAAGTTG  400

seq1  CTATTGCCTTGGTATGCACAAGAAAAAGAAACATGTAAAATAACGTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCCTTGGTATGCACAAGAAAAAGAAACATGTAAAATAACGTTATG  450

seq1  TAGTAAAGTACTTACAAATTTTAATTATTATGTAAAATTTGTGGTTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGTACTTACAAATTTTAATTATTATGTAAAATTTGTGGTTTAGT  500

seq1  ACCCTAAAATTCACACTCACTCAGATAATCTTTGTATTTGGGTATTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAAATTCACACTCACTCAGATAATCTTTGTATTTGGGTATTTAAA  550

seq1  GAGATAACAATATGGGAAAACCAGA-TTTAGAATATAACAGCTAAAAACT  599
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGATAACAATATGGGAAAACCAGATTTTAGAATATAACAGCTAAAAACT  600

seq1  ATAAAAGGAGAGCTGCTAGTTTCCCTCTGCAGTACTTAGATAAGAGAT-G  648
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATAAAAGGAGAGCTGCTAGTTTCCCTCTGCAGTACTTAGATAAGAGATGG  650

seq1  GTAACTAACCCTAATTCTTTCCTTTTGTCTACTTTTCCCTTCCCTTCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAACCCTAATTCTTTCCTTTTGTCTACTTTTCCCTTCCCTTCCTT  700

seq1  CCCCTCCTTGCCTTCCCTTCTTTCCTTCTTTTCTTTTCTTTCTTCCTTTT  748
      |||||||||||||||||||  || ||||||||||||||||||||||||||
seq2  CCCCTCCTTGCCTTCCCTTTCTTTCTTCTTTTCTTTTCTTTCTTCCTTTT  750

seq1  -GGAAGGGAAATAAATGGGGCACATACAGATGATGACACATAC-TTGAAC  796
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGAAGGGAAATAAATGGGGCACATACAGATGATGACACATACTTTGAAC  800

seq1  TT-AAAAGTAAAATTAAATAAATATTAAAAAAGGAGAAAAAACT-AAAAA  844
      || |||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TTAAAAAGTAAAATT-AATAAATATTAAAAAAGGAGAAAAAACTAAAAAA  849

seq1  AAAAAAATAACAGCTTGAAGAGTTGAACA-TCACAAGTAAAAATGTTTAT  893
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAAAATTACAGCTTGAAGAGTTGAACATTCACAAGTAAAAATGTTTAT  899

seq1  GCAGAGCCAGGCACAGTGGCACACATCTTTAATTCCAGCACTT-GGAATG  942
      |||||||||||||| | ||| |||||||||||||| ||||||| ||||||
seq2  GCAGAGCCAGGCACCGGGGC-CACATCTTTAATTCTAGCACTTGGGAATG  948

seq1  CAGAGGCAGGAAAATCTCTGTTCCAGGCCAGCCTGTTGTACCTATATATA  992
      || ||||| |||||||||||||||| ||||| ||||||||||||||||||
seq2  CAAAGGCA-GAAAATCTCTGTTCCA-GCCAGTCTGTTGTACCTATATATA  996

seq1  G-AGTTCCAGGACAGCCATGACTACATAGAGGGACACTGTCTCACAAAAC  1041
      | |||||  | |||| |||||||||||  ||||||| ||   ||||||||
seq2  GAAGTTCAGGAACAG-CATGACTACATGAAGGGACATTGCTCCACAAAAC  1045

seq1  CAAACCAAACCAAACCAAA  1060
        || ||||||||||||||
seq2  --AAACAAACCAAACCAAA  1062

seq1: chrX_105554603_105555090
seq2: B6Ng01-160P20.g_69_551 (reverse)

seq1  AGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTA  50
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  AGTCATTAATAGTCTCCCAACCAAAAGAAGCCCAGGA-CAGATGGGTTTA  49

seq1  GTGCAGAGTTCTGTCAGACCTTCAAAGAAGACCTAATTCCAGTTCTTCAC  100
      |||||||||||| |||||||||||||||| |||||||||||  ||| | |
seq2  GTGCAGAGTTCTATCAGACCTTCAAAGAAAACCTAATTCCAACTCTCCTC  99

seq1  AAACTATTCCACAAAATAGAAACGGAAGGTACTCTACCCAACTCATTCTA  150
      ||||||||||||||||||||||| ||||| ||||||||| | ||| ||||
seq2  AAACTATTCCACAAAATAGAAACAGAAGGGACTCTACCCTATTCAATCTA  149

seq1  TGAAGCCACAATTACTCTGATACCTAAACCACAAAAAGACCCCACAAAGA  200
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  TGAAGCCACAATTACTCTGATACCTAAACCACAGAAAGACCCAACAAAGA  199

seq1  TAGAGAACATCAGACCAATTTCAATTATGAATATCGATGCAAAAATCCTC  250
       ||||||| |||||||||||||  ||||||||||||| |||||||| |||
seq2  -AGAGAACTTCAGACCAATTTCCCTTATGAATATCGACGCAAAAATACTC  248

seq1  AATAAAGTTCTTGCTAACCGAATCCAAGAACACATCAAAACAATCATCCA  300
      ||||||||| ||||||||| ||||| ||||||||||||||| || |||||
seq2  AATAAAGTTATTGCTAACCCAATCCGAGAACACATCAAAACGATAATCCA  298

seq1  TCCTGACCAAGTAGGTTTCATCCCAGGGATGCAGGGATGGTTCAATATAC  350
      ||||| |||| |||| |||||||||||||||||||||||||| |||||||
seq2  TCCTGTCCAAATAGGCTTCATCCCAGGGATGCAGGGATGGTTTAATATAC  348

seq1  GGAAATCCATCAACGTAATCCAGTATATAAACAAACTCAAAGACAAAAAC  400
      |||||||||||||||||||||| |||| ||||||| ||||||||||||||
seq2  GGAAATCCATCAACGTAATCCATTATAAAAACAAATTCAAAGACAAAAAC  398

seq1  CACATGATCATCTCCTTAGATGCTGAGAAAGCATTTGACAAAATCCAAAA  450
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  CACATGATCATCTCGTTAGATGCTGAGAAAGCATTTGACAAAATCCAACA  448

seq1  CCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  488
       | |||||||||  |||| |||||||||||||||||||
seq2  -CTATTCATGAT--AAGTTTTGGAAAGATCAGGAATTC  483