BAC Information

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BAC

Clone NameB6Ng01-160P24
Chromosome5 (Build37)
Map Location 98,571,001 - 98,690,903
singlet/doubletdoublet
Overlap geneLOC666326, Prdm8, Fgf5
Upstream geneLOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320
Downstream gene1700007G11Rik, Bmp3, Prkg2, LOC100041680, Rasgef1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P24.bB6Ng01-160P24.g
ACCDH954232DH954233
length1,1391,124
definitionDH954232|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P24, 5' end.DH954233|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,571,001 - 98,571,923)(98,689,744 - 98,690,903)
sequence
gaattcttcacagagctcttctggatcaccacatctctgttccaggtatc
tatccagaccactgagtagttctttaactcaaaaacttaattgtttgagt
aaaagttttttttttttcagctgaacactcacctgattatgaatttgttc
atcttaggacactttgcagtctggaataggcaagagtctctcaaaccacc
aagtaaaaatgatttcatttttgctgagagtttgttcattaaattctggc
tttcctacagtacaggaatgagagaaggaaaggaggaagaggaccacgcc
ttccatgcctccctggagacaatgacatcacttcctgttctccccattag
cttagaacataaatcagccaagtttactgctgcacataacaattatccca
agtgtataaatccattccgtcttcaacattctccccattccagtctgagt
tcttttcagaccatcccttggcacctgtatctctacttggtccctttaaa
gcaacaggcttttctgctatgtatttaaatttcttgcagcctctactaat
tgcctaatttgtcatataaataagtcagaagcgacctcactgtattagct
cccaggttgtttactttcccattaactaaaaagcctggcagcatcaaatt
cagacattcacatattcagttgtttttaagaagaacccaaagaggcagac
cattggctccttggaaactgtctcctttgcataatcccatgaaattatct
gcagcaccgatagactcattgctagctgaggataaagaaggtctgaaacc
atgaagactggaagttgctggtagcttctaggactgtctgctcgaaatct
ctgctagctggtaaagaacatctcaacgtgtgctcccttctgagggggca
catggaaacctctagtcacagagtgaggacttcctgtatatgagactcta
tctgagcccgcatgctgcgtgtgctctgctatctctcagtcatactttct
ggtcagctctagtacttctacctcttttaagacagaagatggaataggat
tttagtatttgtccagcattccctctcctctaggcaatgtactgttcttt
cagcccatatgcaatgaagcagacctgcaacttcttcag
gaattcaatgtctactacgtcaactgttctcagtccttactactgagatt
aaataaaagaacatataatgaccttttgtgacctccaacgtgttaaagaa
tggctaacaatgcgtgtacactcggaatgacttatttcaagattcaggaa
ctttaccctgcttcctcagtaattctgtatttgcacatagcaggttgttt
ttagtaaatttgacaatagatccttctcaagccctgaaggtattgagaga
ggcttttaaaatatttttttcggtaattctaatttgttactattccacaa
gtataaaaaattcaaaagcctggaaagttataatttcttacataaaacaa
tcttttaaaaccataaaaaccatacctaagatactgaaaatataagttac
actacttatgtgaattgtttaatgaattatgttttgagacgtattgcgct
ttaaatcatttcctagaaaagtgtgatgatctacgatgttgtgactgtgt
gatgcacagtctgtgtgtcaagccttagtccctttatttcctgcaatcat
ttcaagacccacatgtgctgagtcaagaaactgttaactgcaattcctcg
agggtttttaaaaggttcaatgtgtgctttgcacatagctagaaagcctg
cctagtatataaagtcacaaaagactttatatataaatatgagtggggag
aatattcttgttagttatacacatgatactgttaaaatatagaaacagtg
tatttcattagagctgaaatagagcaatatagttcattagaacagaggaa
aacaaaacaaagaaaactcagaggaggagagagcagatctcaacacttgg
acacaattgttcaagcatgtaccctgcttagggtattgtgaaatactctg
tggaggtgacattttctcagtgtcttgaagtagcatctccctacagactg
tgcacatagtattggccacgagggcgatgagtgcatacaggtgatcagtt
tgtgaggatatatgctagcgcaggctgaacatcttgcagtctcccatatt
acgatgctcacttcgcttcgcgttaacctcgaagcttcaagagaaaagga
aacctggactgttgttacgtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98571001_98571923
seq2: B6Ng01-160P24.b_292_1184

seq1  TGGCTTTCCTACAGTACAGGAATGAGAGAAGGAAAGGAGGAAGAGGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCCTACAGTACAGGAATGAGAGAAGGAAAGGAGGAAGAGGACCA  50

seq1  CGCCTTCCATGCCTCCCTGGAGACAATGACATCACTTCCTGTTCTCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCCATGCCTCCCTGGAGACAATGACATCACTTCCTGTTCTCCCCA  100

seq1  TTAGCTTAGAACATAAATCAGCCAAGTTTACTGCTGCACATAACAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTAGAACATAAATCAGCCAAGTTTACTGCTGCACATAACAATTAT  150

seq1  CCCAAGTGTATAAATCCATTCCGTCTTCAACATTCTCCCCATTCCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGTATAAATCCATTCCGTCTTCAACATTCTCCCCATTCCAGTCT  200

seq1  GAGTTCTTTTCAGACCATCCCTTGGCACCTGTATCTCTACTTGGTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTTTCAGACCATCCCTTGGCACCTGTATCTCTACTTGGTCCCTT  250

seq1  TAAAGCAACAGGCTTTTCTGCTATGTATTTAAATTTCTTGCAGCCTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAACAGGCTTTTCTGCTATGTATTTAAATTTCTTGCAGCCTCTAC  300

seq1  TAATTGCCTAATTTGTCATATAAATAAGTCAGAAGCGACCTCACTGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCCTAATTTGTCATATAAATAAGTCAGAAGCGACCTCACTGTATT  350

seq1  AGCTCCCAGGTTGTTTACTTTCCCATTAACTAAAAAGCCTGGCAGCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAGGTTGTTTACTTTCCCATTAACTAAAAAGCCTGGCAGCATCA  400

seq1  AATTCAGACATTCACATATTCAGTTGTTTTTAAGAAGAACCCAAAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGACATTCACATATTCAGTTGTTTTTAAGAAGAACCCAAAGAGGC  450

seq1  AGACCATTGGCTCCTTGGAAACTGTCTCCTTTGCATAATCCCATGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTGGCTCCTTGGAAACTGTCTCCTTTGCATAATCCCATGAAATT  500

seq1  ATCTGCAGCACCGATAGACTCATTGCTAGCTGAGGATAAAAGAAGGTCTG  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCTGCAGCACCGATAGACTCATTGCTAGCTGAGGAT-AAAGAAGGTCTG  549

seq1  AAACCATGAAGACTGGAAGTTGCTGGTAGCTTCTAGGACTGTCTGCTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAACCATGAAGACTGGAAGTTGCTGGTAGCTTCTAGGACTGTCTGCTCG-  598

seq1  AAATCTCTGCTAAGCTGGTAAAGAACATCTCAACGTGTGCTCCCCTTCTG  650
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  AAATCTCTGCT-AGCTGGTAAAGAACATCTCAACGTGTGCT-CCCTTCTG  646

seq1  AGGGGGCACATGGAAACCTCTAGTCACAGAGTGAGGGACTTCCTGTAATA  700
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  AGGGGGCACATGGAAACCTCTAGTCACAGAGTGA-GGACTTCCTGT-ATA  694

seq1  TGAGACTCTATCCTGAGCCCGGCCATGGCTGCGTGTGCTCCTGCTATCTC  750
      ||||||||||| |||||||||  ||| |||||||||||| ||||||||||
seq2  TGAGACTCTAT-CTGAGCCCG--CAT-GCTGCGTGTGCT-CTGCTATCTC  739

seq1  TCAGTCATACCTTTTCCTTGGTCAGCTCTTAAGTACTTCTACCTCTCTAC  800
      ||||||||||  ||||  |||||||||||  ||||||||||||||| |  
seq2  TCAGTCATAC--TTTC--TGGTCAGCTCT--AGTACTTCTACCTCTTTTA  783

seq1  AGACAGGAGGATGGAATAGGATTTTTAGGTATTTGTCACAGCA-TCCCTC  849
      ||||| || ||||||||||||||||   ||||||||| ||||| ||||||
seq2  AGACA-GAAGATGGAATAGGATTTT--AGTATTTGTC-CAGCATTCCCTC  829

seq1  CCCTTTCTAGGGCAATGGTACTGTCTCTTCAGCAACATCATGCAAATGAA  899
       ||  |||| |||||| |||||||   ||||||  ||| |||| |||| |
seq2  TCC--TCTA-GGCAAT-GTACTGTTCTTTCAGC-CCAT-ATGC-AATG-A  871

seq1  AGCAGCCCTGCACAACTTCTTCAG  923
      ||||| ||||  ||||||||||||
seq2  AGCAGACCTG--CAACTTCTTCAG  893

seq1: chr5_98689744_98690903
seq2: B6Ng01-160P24.g_68_1191 (reverse)

seq1  CAACA-GTAACAAAACAGTTCCCCAGGTGTTCCCTTTTCTCTGTGAAGCT  49
      ||||| |||||  ||||||   ||||  ||| |||||||||| |||||||
seq2  CAACACGTAAC--AACAGT---CCAG--GTTTCCTTTTCTCT-TGAAGCT  42

seq1  TCTGAGTGTTTAAAGGCGGAGCTGAGTGAGCACTCGGTAATATTTGTGAG  99
      || ||| |||  || ||| |||  |||||||| || ||||||  || |||
seq2  TC-GAG-GTT--AACGCGAAGCGAAGTGAGCA-TC-GTAATA--TGGGAG  84

seq1  AACTGC-AGATGTTCAGCTTGCGCTATGCAATAATAATTCTTCAACAAAC  148
       ||||| ||||||||||| ||||||| ||    |||  || || ||||||
seq2  -ACTGCAAGATGTTCAGCCTGCGCTA-GC----ATATATCCTC-ACAAAC  127

seq1  TGATTCACCTGTATGCACTCATCGCCCTCGTGGGCAAATTAACTATTGTG  198
      ||| ||||||||||||||||||||||||||||| |||    |||| ||||
seq2  TGA-TCACCTGTATGCACTCATCGCCCTCGTGGCCAA---TACTA-TGTG  172

seq1  CACAAGTCCTGTAGGGGAGAATGCTACTTCAAGGACACCTGAGGAAAATG  248
      ||| ||| ||||| ||||| |||||||||||| |||| |||| |||||||
seq2  CAC-AGT-CTGTA-GGGAG-ATGCTACTTCAA-GACA-CTGA-GAAAATG  215

seq1  TCACCTCCACAGAGGTATTTCCACAATACCCTAAGCAGGGTACATGCTTG  298
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TCACCTCCACAGA-GTATTT-CACAATACCCTAAGCAGGGTACATGCTTG  263

seq1  AAACAATTGTGTCCAAGTGTTGAGATCTGCTCTCTCCTCCTCTGAGTTTT  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACAATTGTGTCCAAGTGTTGAGATCTGCTCTCTCCTCCTCTGAGTTTT  312

seq1  CTTTGTTTTGTTTTCCTCTGTTCTAATGAACTATATTGCTCTATTTCAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGTTTTCCTCTGTTCTAATGAACTATATTGCTCTATTTCAGC  362

seq1  TCTAATGAAATACACTGTTTCTATATTTTAACAGTATCATGTGTATAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAAATACACTGTTTCTATATTTTAACAGTATCATGTGTATAACT  412

seq1  AACAAGAATATTCTCCCCACTCATATTTATATATAAAGTCTTTTGTGACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAATATTCTCCCCACTCATATTTATATATAAAGTCTTTTGTGACT  462

seq1  TTATATACTAGGCAGGCTTTCTAGCTATGTGCAAAGCACACATTGAACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACTAGGCAGGCTTTCTAGCTATGTGCAAAGCACACATTGAACCT  512

seq1  TTTAAAAACCCTCGAGGAATTGCAGTTAACAGTTTCTTGACTCAGCACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACCCTCGAGGAATTGCAGTTAACAGTTTCTTGACTCAGCACAT  562

seq1  GTGGGTCTTGAAATGATTGCAGGAAATAAAGGGACTAAGGCTTGACACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTTGAAATGATTGCAGGAAATAAAGGGACTAAGGCTTGACACAC  612

seq1  AGACTGTGCATCACACAGTCACAACATCGTAGATCATCACACTTTTCTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGCATCACACAGTCACAACATCGTAGATCATCACACTTTTCTAG  662

seq1  GAAATGATTTAAAGCGCAATACGTCTCAAAACATAATTCATTAAACAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATTTAAAGCGCAATACGTCTCAAAACATAATTCATTAAACAATT  712

seq1  CACATAAGTAGTGTAACTTATATTTTCAGTATCTTAGGTATGGTTTTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAGTAGTGTAACTTATATTTTCAGTATCTTAGGTATGGTTTTTAT  762

seq1  GGTTTTAAAAGATTGTTTTATGTAAGAAATTATAACTTTCCAGGCTTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAAAGATTGTTTTATGTAAGAAATTATAACTTTCCAGGCTTTTG  812

seq1  AATTTTTTATACTTGTGGAATAGTAACAAATTAGAATTACCGAAAAAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTATACTTGTGGAATAGTAACAAATTAGAATTACCGAAAAAAAT  862

seq1  ATTTTAAAAGCCTCTCTCAATACCTTCAGGGCTTGAGAAGGATCTATTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGCCTCTCTCAATACCTTCAGGGCTTGAGAAGGATCTATTGT  912

seq1  CAAATTTACTAAAAACAACCTGCTATGTGCAAATACAGAATTACTGAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTACTAAAAACAACCTGCTATGTGCAAATACAGAATTACTGAGGA  962

seq1  AGCAGGGTAAAGTTCCTGAATCTTGAAATAAGTCATTCCGAGTGTACACG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTAAAGTTCCTGAATCTTGAAATAAGTCATTCCGAGTGTACACG  1012

seq1  CATTGTTAGCCATTCTTTAACACGTTGGAGGTCACAAAAGGTCATTATAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTAGCCATTCTTTAACACGTTGGAGGTCACAAAAGGTCATTATAT  1062

seq1  GTTCTTTTATTTAATCTCAGTAGTAAGGACTGAGAACAGTTGACGTAGTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTATTTAATCTCAGTAGTAAGGACTGAGAACAGTTGACGTAGTA  1112

seq1  GACATTGAATTC  1160
      ||||||||||||
seq2  GACATTGAATTC  1124