BAC Information

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BAC

Clone NameB6Ng01-161A12
Chromosome10 (Build37)5 (Build37)
Map Location 12,140,621 - 12,141,12878,175,155 - 78,175,416
singlet/doubletsingletsinglet
Overlap geneUtrn
Upstream geneEpm2a, EG666732, LOC100039343
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161A12.bB6Ng01-161A12.g
ACCDH954256DH954257
length715657
definitionDH954256|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A12, 5' end.DH954257|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,140,621 - 12,141,128)(78,175,155 - 78,175,416)
sequence
gaattccatacctagacaaagaactacagccactgatgacagctaggaaa
aggagaattaggctctctcaggaatgagccctcattgattttccagtaca
gaaaagtcagtcctgaaaccatatacacacaaataacaagaaaagattca
ggatgttatatacatctatctatctatctatctatctatctatctatcta
tctatctatctatctatctatctatctatcatctatctatctacctattg
tctatccatctgtgggaccatgaaaggcagtctgtgtttctggttgagct
agagacccagtagaaaattctacaaggtactgaaccatgagctatgctcc
tagacattaggctcctgacagcaggagccctcaactccataatccagtgg
ttatatcagtcacataggcaatgccccaagctcctggaactggttagatt
ccacctccacagttacctggctcagcaaggtagtacagcccactataaaa
ggggctgcttggcccctcctctctctctcttaagctattgcctctcttac
tctcacctttcgcccttcttctccccttcccttctcctctctctccatgt
ggccactgccaatttctctctctctctctctctctctctctctctctctc
tctctctctctctctctctctctgtgtctctgtgtgcgtgtgggcgcggg
agggagaaaaaaaat
gaattctttgaaattttggagcaaggctgtcctatcatctgacaactatt
tcccctttaagagacagctctgtgcttgcttgcccttgctttcactagaa
agtttattccttcactggcattaaactctacttctttgtgatttcagtgt
atattgaagaccagcagagacatccagcctcatgaactgaacaattactg
aattcttggacttttcagtggtagatattcatcattggtttagctggatc
acagcctgtaagacattctaagaaatctcagagaaattacacacacacac
acacacacacacacacacacacacacacacacacacaaacacacacacag
gcatttgcccatgtgtgcaggtgcggagggcagtggttcatgttgagtgt
tttccttcatggctttccctcttaatttttgaggcatgctctctcactga
acctggaactcttcattacactggctgggcactgagcctgagggatccac
tttctttatcttccagcatagggttatagatttaggtccacaggcccaat
tttcatatggatgcaaaggcatatggtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtatatatttagatgtgtgtgagagagtgtgag
agagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12140621_12141128
seq2: B6Ng01-161A12.b_627_762 (reverse)

seq1  ATTTTTTTTCTCCCTCCTAATTTCTTAGAAGATGCTTGTTAACTCAAATT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGACTTGTAAGCAATTTTGTCTGCTTCATAGATGCATAAAGATACTTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTTGCCAACTTTATCTTTAAGGAGATGACAATGAAACATAAAACGAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTCAGAGAAGAGTTGCATTTGAAGTGTAAGATGAAATATTTTTGATAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAATTTAAAAAGATATAATGTGGAGCTGAGGATATAACTCAAAAGTAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCCTTCTCTAGTAAGTATAAGGCTCAGGGTTCAGACCAGTACCACAAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACGAAACAAAATAATGAAAGGTATTATAACAAAAAGATTGAAACCTATGA  350
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGGAAGAAAGGAAGGGAAATAAATGAAAAAATGAAGGAGCAAATAATA  400
                          ||   |            | ||  | |   
seq2  --------------------ATTTTTTTTCTCCCTCCCGCGCCCACACGC  30

seq1  CCACATTGATTGGGCAAATATTTCTAAATACAGAGAGAGAGAGAGAGAGA  450
       ||||  ||     || |       | | | |||||||||||||||||||
seq2  ACACAGAGA-----CACA------GAGAGAGAGAGAGAGAGAGAGAGAGA  69

seq1  GAGAGAGAGAGAGA-AGAAAAGAAGAAGGAGAA---GGAGGAGG----AG  492
      |||||||||||||| ||| |   |||  |||||   ||  | ||    | 
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATTGGCAGTGGCCACAT  119

seq1  GAAGAG-GAGGAGAAGG  508
      | |||| ||||||||||
seq2  GGAGAGAGAGGAGAAGG  136

seq1: chr5_78175155_78175416
seq2: B6Ng01-161A12.g_353_722

seq1  TACACACACACACACACACACACACACACACACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACACACACACACACACACA  50

seq1  CAAACAC-----------------TCTATGAA---GAGAAATACA-----  75
       | ||||                 | | || |   | | |   ||     
seq2  AACACACACACAGGCATTTGCCCATGTGTGCAGGTGCGGAGGGCAGTGGT  100

seq1  --ATCTACTGAGTTTATGTGTATATATTTC-----TCGGTTTTG------  112
        || |   | ||||   |  ||   ||||     |   |||||      
seq2  TCATGTTGAGTGTTTTCCTTCATGGCTTTCCCTCTTAATTTTTGAGGCAT  150

seq1  ----------------GGTAACTAATTAAGACACTTG-----------TC  135
                       | ||||  | |  ||||| |            |
seq2  GCTCTCTCACTGAACCTGGAACTCTTCATTACACTGGCTGGGCACTGAGC  200

seq1  CT-TGGGAAAGAC-----TTATCGTCCCTCATA----TATATAT------  169
      ||  ||||   ||     ||||| |||  ||||    |||| ||      
seq2  CTGAGGGATCCACTTTCTTTATCTTCCAGCATAGGGTTATAGATTTAGGT  250

seq1  -----------ATATATATATATAT--------ATAT-GTGTGTGTGTGT  199
                 || |  ||||  ||        |||| ||||||||||||
seq2  CCACAGGCCCAATTTTCATATGGATGCAAAGGCATATGGTGTGTGTGTGT  300

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATA-----CT  244
      |||||||||||||||||||||||||||||||| | |||||| |      |
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATTTAGATGTGTGT  350

seq1  GAGAGA--GAGAGAGAGAGA  262
      ||||||  | ||||||||||
seq2  GAGAGAGTGTGAGAGAGAGA  370