BAC Information

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BAC

Clone NameB6Ng01-161A20
Chromosome5 (Build37)
Map Location 54,458,524 - 54,604,424
singlet/doubletdoublet
Overlap geneStim2
Upstream geneSlc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161A20.bB6Ng01-161A20.g
ACCDH954270DH954271
length1,0691,009
definitionDH954270|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A20, 5' end.DH954271|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,603,334 - 54,604,424)(54,458,524 - 54,459,538)
sequence
gaattccagggtctatcaagttataatcaagcctgcataactgtctcaag
tattttgttgagatgtactttcatataacatgctaagtcaacataaatga
aatggctgattaaaaataaatttttaaagtcatagtaaaacttttgaaca
tatataaaccttatgaggtttatattttgcaatcagtttcattgcatgaa
aagtaaattctctttacatagtgaggatgcctcctggcatgctgagaagt
ccacttttactctcttttccatttttgccttgttgaccaggaagctcaaa
ggaaaatcagatacattatattcattgagctgtcttttgcaccatatgga
ttcttattatttttattatgctcatgctcttatacttcagttcaacctgt
attttctttttcaaagacttaagataaaagaaatgaaacaagtctcagag
tattaaagaaaggaatcaattaacttcccaaggttattaaagccgagcaa
tctcttcacattttctataatcagtgttctttaaataaatggtctgaggt
gcactgtattggcaaagaaagcctgtggagtagggactcccactataaac
aatgacaactgacctgagccatttacccagtgacattcattttgtcttga
agtccgaatagaccttagactaaaaaatacatccaggaaagggaaagaat
gacagagtcaacaaatccccaaggaggagtcaggctgcactgacaaccgg
tgattgtgtgcagctgcacacatttcccctggaaaactcctgtggggaag
acaggggttccgaggtccctttgatttttccatccagaggcctggtgacc
ctctgcttcactgacttttacacaacaagcctggcctcagtttcctcatc
tgttacaaacgcgcaatcaatcatttgctctctctgcatgcttctctgag
cccagtgagctcattagcatagctcatagctgtgagtcttctaaccagct
ttatgtaataagaaatacacatctagactagaggagagctttcacttcat
ttctactcagctcttattt
gaattcagtaatcacaccctcgcccatgacctctcacacccaccagaaga
tgttccaaccttgtgctccacctgtctgagctgtgtccttgcccccttcc
ccactccaggattctgtgagctctaaaggagcctccaggagccagccagc
tgctgtccacttttactcagctcctcttgcccacagttgtacctgagaca
ccaagtcctcaaggaggccttcctgtacagcagtgggatgacctctggat
ccttttgcttagttttcactctttttcttttttctttctttctttctttc
ttttttttttttttttcttgtagtccaggactccaggtgtcaaattctgt
tagtgattaatttctttcatagtgttttctctaggtaagagttgtaggtt
ggccttttttttttttcatgttatatgtgctgctcgtgtgttttctacat
tacgttatgtctgatgaacacctgttgtcttctttctctcttctgagaag
tatgcctgtgtgagctctgatttcctgtaagactttctgtttgtatctgg
ttttaggtttttgactagtgtggctcctgagtcctgttcatttaagatac
gcttttatgaaatttgctgtcattttgtttgctatactcagctgtgaatc
tcagtatttttcatcaagtattttgtgtctaaaatattggcttagaattt
tgttttaaacttttaaaaactttaactgtatatacctctatttaacatgc
ttactttgtgtctcagcttgttgaatatgtagactatgtctgtaaatatc
tttttgaaattatgtgcatgcccagggggtgatgtgttgtataaattttt
tttgtagggacaaaagagagcatcagatttctgtgagcttgagtatagat
ggttgcaatctgcccagcgtgggactgggaactgccctttctttacttag
tcacttctccagccctgtcatacttattattaacatttttaaaaacacat
ctcagctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54603334_54604424
seq2: B6Ng01-161A20.b_30_1098 (reverse)

seq1  AAATAAAGAGCTGATGTAGAAATGAAAAGTGAAAAGCCTCCTCCTCTAGT  50
      |||| ||||||||| |||||||||  ||||| |||||   ||||||||||
seq2  AAAT-AAGAGCTGA-GTAGAAATG--AAGTG-AAAGC--TCTCCTCTAGT  43

seq1  CCTAGATGGTGTAATGTCTTATTTACATAAAGCTGTGTTTAGAAGACTCA  100
       |||||| |||| || ||||| |||||||||||  || ||||||||||||
seq2  -CTAGAT-GTGT-ATTTCTTA-TTACATAAAGC--TGGTTAGAAGACTCA  87

seq1  CCAGGCTTTATGAGCTATGCCTAATGAGCTTCACTGGGCTCAGAGAAGCA  150
       |||    ||||||||||| ||||||||| ||||||||||||||||||||
seq2  -CAG---CTATGAGCTATG-CTAATGAGC-TCACTGGGCTCAGAGAAGCA  131

seq1  TGCCAGAGAGAGCAAATGATTGATTGCGCGTTTGTTAACAGATGAGGAAA  200
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TG-CAGAGAGAGCAAATGATTGATTGCGCGTTTG-TAACAGATGAGGAAA  179

seq1  CTGAGGCCAGGCTTGTTGTTGTAAAAGTCAGTGAAGCAGAGGGTCACCAG  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGAGGCCAGGCTTGTTG-TGTAAAAGTCAGTGAAGCAGAGGGTCACCAG  228

seq1  GCCTCTGGATGGAAAAATCAAAGGGACCTCGGAACCCCTGTCTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGATGGAAAAATCAAAGGGACCTCGGAACCCCTGTCTTCCCCAC  278

seq1  AGGAGTTTTCCAGGGGAAATGTGTGCAGCTGCACACAATCACCGGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTTCCAGGGGAAATGTGTGCAGCTGCACACAATCACCGGTTGTC  328

seq1  AGTGCAGCCTGACTCCTCCTTGGGGATTTGTTGACTCTGTCATTCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGCCTGACTCCTCCTTGGGGATTTGTTGACTCTGTCATTCTTTCC  378

seq1  CTTTCCTGGATGTATTTTTTAGTCTAAGGTCTATTCGGACTTCAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGATGTATTTTTTAGTCTAAGGTCTATTCGGACTTCAAGACAA  428

seq1  AATGAATGTCACTGGGTAAATGGCTCAGGTCAGTTGTCATTGTTTATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTCACTGGGTAAATGGCTCAGGTCAGTTGTCATTGTTTATAGT  478

seq1  GGGAGTCCCTACTCCACAGGCTTTCTTTGCCAATACAGTGCACCTCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCCCTACTCCACAGGCTTTCTTTGCCAATACAGTGCACCTCAGAC  528

seq1  CATTTATTTAAAGAACACTGATTATAGAAAATGTGAAGAGATTGCTCGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTAAAGAACACTGATTATAGAAAATGTGAAGAGATTGCTCGGC  578

seq1  TTTAATAACCTTGGGAAGTTAATTGATTCCTTTCTTTAATACTCTGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAACCTTGGGAAGTTAATTGATTCCTTTCTTTAATACTCTGAGAC  628

seq1  TTGTTTCATTTCTTTTATCTTAAGTCTTTGAAAAAGAAAATACAGGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATTTCTTTTATCTTAAGTCTTTGAAAAAGAAAATACAGGTTGA  678

seq1  ACTGAAGTATAAGAGCATGAGCATAATAAAAATAATAAGAATCCATATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTATAAGAGCATGAGCATAATAAAAATAATAAGAATCCATATGG  728

seq1  TGCAAAAGACAGCTCAATGAATATAATGTATCTGATTTTCCTTTGAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGACAGCTCAATGAATATAATGTATCTGATTTTCCTTTGAGCTT  778

seq1  CCTGGTCAACAAGGCAAAAATGGAAAAGAGAGTAAAAGTGGACTTCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCAACAAGGCAAAAATGGAAAAGAGAGTAAAAGTGGACTTCTCAG  828

seq1  CATGCCAGGAGGCATCCTCACTATGTAAAGAGAATTTACTTTTCATGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGGAGGCATCCTCACTATGTAAAGAGAATTTACTTTTCATGCAA  878

seq1  TGAAACTGATTGCAAAATATAAACCTCATAAGGTTTATATATGTTCAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGATTGCAAAATATAAACCTCATAAGGTTTATATATGTTCAAAA  928

seq1  GTTTTACTATGACTTTAAAAATTTATTTTTAATCAGCCATTTCATTTATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTATGACTTTAAAAATTTATTTTTAATCAGCCATTTCATTTATG  978

seq1  TTGACTTAGCATGTTATATGAAAGTACATCTCAACAAAATACTTGAGACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAGCATGTTATATGAAAGTACATCTCAACAAAATACTTGAGACA  1028

seq1  GTTATGCAGGCTTGATTATAACTTGATAGACCCTGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCAGGCTTGATTATAACTTGATAGACCCTGGAATTC  1069

seq1: chr5_54458524_54459538
seq2: B6Ng01-161A20.g_65_1073

seq1  GAATTCAGTAATCACACCCTCGCCCATGACCTCTCACACCCACCAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATCACACCCTCGCCCATGACCTCTCACACCCACCAGAAGA  50

seq1  TGTTCCAACCTTGTGCTCCACCTGTCTGAGCTGTGTCCTTGCCCCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAACCTTGTGCTCCACCTGTCTGAGCTGTGTCCTTGCCCCCTTCC  100

seq1  CCACTCCAGGATTCTGTGAGCTCTAAAGGAGCCTCCAGGAGCCAGCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCAGGATTCTGTGAGCTCTAAAGGAGCCTCCAGGAGCCAGCCAGC  150

seq1  TGCTGTCCACTTTTACTCAGCTCCTCTTGCCCACAGTTGTACCTGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCACTTTTACTCAGCTCCTCTTGCCCACAGTTGTACCTGAGACA  200

seq1  CCAAGTCCTCAAGGAGGCCTTCCTGTACAGCAGTGGGATGACCTCTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCTCAAGGAGGCCTTCCTGTACAGCAGTGGGATGACCTCTGGAT  250

seq1  CCTTTTGCTTAGTTTTCACTCTTTTTCTTTTTTCTTTCTTTCTTTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCTTAGTTTTCACTCTTTTTCTTTTTTCTTTCTTTCTTTCTTTC  300

seq1  TTTTTTTTTTTTTTTTCTTGTAGTCCAGGACTCCAGGTGTCAAATTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTCTTGTAGTCCAGGACTCCAGGTGTCAAATTCTGT  350

seq1  TAGTGATTAATTTCTTTCATAGTGTTTTCTCTAGGTAAGAGTTGTAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTAATTTCTTTCATAGTGTTTTCTCTAGGTAAGAGTTGTAGGTT  400

seq1  GGCCTTTTTTTTTTTTCATGTTATATGTGCTGCTCGTGTGTTTTCTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTTTTTTTTTCATGTTATATGTGCTGCTCGTGTGTTTTCTACAT  450

seq1  TACGTTATGTCTGATGAACACCTGTTGTCTTCTTTCTCTCTTCTGAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTATGTCTGATGAACACCTGTTGTCTTCTTTCTCTCTTCTGAGAAG  500

seq1  TATGCCTGTGTGAGCTCTGATTTCCTGTAAGACTTTCTGTTTGTATCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGTGTGAGCTCTGATTTCCTGTAAGACTTTCTGTTTGTATCTGG  550

seq1  TTTTAGGTTTTTGACTAGTGTGGCTCCTGAGTCCTGTTCATTTAAGATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTTTTTGACTAGTGTGGCTCCTGAGTCCTGTTCATTTAAGATAC  600

seq1  GCTTTTATGAAATTTGCTGTCATTTTGTTTGCTATACTCAGCTGTGAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATGAAATTTGCTGTCATTTTGTTTGCTATACTCAGCTGTGAATC  650

seq1  TCAGTATTTTTCATCAAGTATTTTGTGTCTAAAATATTGGCTTAGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTTTTCATCAAGTATTTTGTGTCTAAAATATTGGCTTAGAATTT  700

seq1  TGTTTTAAACTTTTAAAAACTTTAACTGTATATACCTCTATTTAACATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAACTTTTAAAAACTTTAACTGTATATACCTCTATTTAACATGC  750

seq1  TTACTTTGTGTCTCAGCTTGTTGAATATGTAGACTATGTCTGTAAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTACTTTGTGTCTCAGCTTGTTGAATATGTAGACTATGTCTGT-AAATAT  799

seq1  CTATTTGAAATTATGTGCATGCCAAGGGGGTGATGTG-TGTATAAA-TGT  848
      || |||||||||||||||||||| ||||||||||||| |||||||| | |
seq2  CTTTTTGAAATTATGTGCATGCCCAGGGGGTGATGTGTTGTATAAATTTT  849

seq1  CTTTGTAGGGGACAAAAGAGAGCATCAGA-TTCTGTGGAGCTGAAGGTAT  897
       |||||| ||||||||||||||||||||| |||||| |||||  | ||||
seq2  TTTTGTA-GGGACAAAAGAGAGCATCAGATTTCTGT-GAGCTTGA-GTAT  896

seq1  AGATGGTTGCAATCTGCCCAGCGTGGGACTGGGAACTGGCCCTGTCTGTA  947
      ||||||||||||||||||||||||||||||||||||| ||||| ||| ||
seq2  AGATGGTTGCAATCTGCCCAGCGTGGGACTGGGAACT-GCCCTTTCTTTA  945

seq1  CTTAGTCCACTTCTCCAGCCCCTGTCATACTTATTATTAACATTTTAAAA  997
      |||||| ||||||||||| ||||||||||||||||||||||||||| |||
seq2  CTTAGT-CACTTCTCCAG-CCCTGTCATACTTATTATTAACATTTTTAAA  993

seq1  ACCACAATTCTCAGCTAT  1015
      | ||||  ||||||||||
seq2  AACACA--TCTCAGCTAT  1009