BAC Information

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BAC

Clone NameB6Ng01-161A22
Chromosome5 (Build37)
Map Location 65,350,413 - 65,449,217
singlet/doubletdoublet
Overlap geneTlr6, 9130005N14Rik
Upstream geneAA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3, Tlr1
Downstream geneTmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161A22.bB6Ng01-161A22.g
ACCDH954274DH954275
length197973
definitionDH954274|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A22, 5' end.DH954275|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,350,413 - 65,350,609)(65,448,228 - 65,449,217)
sequence
taggtagcatgggtgggacaaaggggaaggtttatttatttattttaaag
gaagtatgaggagacaataagaatttgcttaatacatcaaacagaaagtg
aaagagaaaagaatagtcaaccacaaaaccaaaagtggtggcggatggag
ggagcgccgtaaaaactaaagctatgagaaaaggggggtggggggga
gaattcattcatttctcctcacttggctaggagaggattccttcatttgc
gctccctgtgggggtttgaataggaatggcctccataggctcttatattc
aaatatttggtccttagggagtggcaatacatgacagggattaggaggtg
tggccttattggaggaagtgtacactgggcgtggctgttggggtttcaac
cactcaagccaagcctagattctttctctcttcctgcttcctgtggacct
ggaagtagaactctcaagttctccagcaggaggtctgccggtgtgtcacg
gtgccaccgtgctacccaccatgacaatgatggaataaacttctgaaact
gtaagtcagcgccaatgaaatgctttcctttatgcgagttgctgtggtca
tggtgtttcttcacaacaatagaacactgattaaaacagccccttttatt
aggagagaaaaagcagagttaagtccctcactaaaactcaaagcaagcta
aagtgatttggataccacgggtgtggtttttttttttttttcctgcatgg
gggtcaaacccagggccttactcatgctaggcaagggccctactcactga
ggttcagtctcagctctccaagtccactctttcaaccacagacccccctc
tttagggagctaaattaggtcttctttcttaggaacaaaaacttaggaca
gtaagataccttccagaagtttttctagttatttgtctcctttgtttgaa
agttgttccaaagatctaccccctaacaattctctaccataaatcttctc
ttatgtttacccatgtaaccagacctcaaagacttcaattaggggtaatt
atgaagaatcacagtacaggttttggttctttcggggggtgggggggcat
gtttagatgtcataaagagatcatagtatgtgtatgacttttcaatcaaa
tttcagactctaacatgaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_65350413_65350609
seq2: B6Ng01-161A22.b_48_244

seq1  TAGGTAGCATGGGTGGGACAAAGGGGAAGGTTTATTTATTTATTTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGCATGGGTGGGACAAAGGGGAAGGTTTATTTATTTATTTTAAAG  50

seq1  GAAGTATGAGGAGACAATAAGAATTTGCTTAATACATCAAACAGAAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGAGGAGACAATAAGAATTTGCTTAATACATCAAACAGAAAGTG  100

seq1  AAAGAGAAAAGAATAGTCAACCACAAAACCAAAAGTGGTGGCGGATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAAGAATAGTCAACCACAAAACCAAAAGTGGTGGCGGATGGAG  150

seq1  GGAGCGCCGTAAAAACTAAAGCTATGAGAAAAGGGGGGTGGGGGGGA  197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGCCGTAAAAACTAAAGCTATGAGAAAAGGGGGGTGGGGGGGA  197

seq1: chr5_65448228_65449217
seq2: B6Ng01-161A22.g_66_1038 (reverse)

seq1  ATTTTTCATGTTAGAGGTTCTTGAAATTTTGTTTGAAAAAGTCAATTAAC  50
      ||||||||||||||||  || ||||| |||| ||| ||||||||    ||
seq2  ATTTTTCATGTTAGAG--TC-TGAAA-TTTGATTG-AAAAGTCA---TAC  42

seq1  ACATTACTTATTGATCTTCTTTTATGAACATCTAAACATG-CCCCCCACC  99
      ||| ||||   ||||||   |||||| ||||||||||||| |||||||||
seq2  ACA-TACT--ATGATCT--CTTTATG-ACATCTAAACATGCCCCCCCACC  86

seq1  CCCGGAAAGAAACCAAGAACCTGTACTTGTGATTCTTCATAATTACCACC  149
      ||| ||||| |||||| ||||||||| |||||||||||||||||||| ||
seq2  CCCCGAAAG-AACCAA-AACCTGTAC-TGTGATTCTTCATAATTACC-CC  132

seq1  TAATTGAAGTCTTTGAGGTCTGGTTACATGGGTAAACATAAGAGAAGATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAAGTCTTTGAGGTCTGGTTACATGGGTAAACATAAGAGAAGATT  182

seq1  TATGGTAGAGAATTGTTAGGGGGTAGATCTTTGGAACAACTTTCAAACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAGAGAATTGTTAGGGGGTAGATCTTTGGAACAACTTTCAAACAA  232

seq1  AGGAGACAAATAACTAGAAAAACTTCTGGAAGGTATCTTACTGTCCTAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAAATAACTAGAAAAACTTCTGGAAGGTATCTTACTGTCCTAAG  282

seq1  TTTTTGTTCCTAAGAAAGAAGACCTAATTTAGCTCCCTAAAGAGGGGGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTCCTAAGAAAGAAGACCTAATTTAGCTCCCTAAAGAGGGGGGT  332

seq1  CTGTGGTTGAAAGAGTGGACTTGGAGAGCTGAGACTGAACCTCAGTGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTGAAAGAGTGGACTTGGAGAGCTGAGACTGAACCTCAGTGAGT  382

seq1  AGGGCCCTTGCCTAGCATGAGTAAGGCCCTGGGTTTGACCCCCATGCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCTTGCCTAGCATGAGTAAGGCCCTGGGTTTGACCCCCATGCAGG  432

seq1  AAAAAAAAAAAAAAACCACACCCGTGGTATCCAAATCACTTTAGCTTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACCACACCCGTGGTATCCAAATCACTTTAGCTTGCT  482

seq1  TTGAGTTTTAGTGAGGGACTTAACTCTGCTTTTTCTCTCCTAATAAAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTAGTGAGGGACTTAACTCTGCTTTTTCTCTCCTAATAAAAGG  532

seq1  GGCTGTTTTAATCAGTGTTCTATTGTTGTGAAGAAACACCATGACCACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTTAATCAGTGTTCTATTGTTGTGAAGAAACACCATGACCACAG  582

seq1  CAACTCGCATAAAGGAAAGCATTTCATTGGCGCTGACTTACAGTTTCAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCGCATAAAGGAAAGCATTTCATTGGCGCTGACTTACAGTTTCAGA  632

seq1  AGTTTATTCCATCATTGTCATGGTGGGTAGCACGGTGGCACCGTGACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTCCATCATTGTCATGGTGGGTAGCACGGTGGCACCGTGACACA  682

seq1  CCGGCAGACCTCCTGCTGGAGAACTTGAGAGTTCTACTTCCAGGTCCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGACCTCCTGCTGGAGAACTTGAGAGTTCTACTTCCAGGTCCACA  732

seq1  GGAAGCAGGAAGAGAGAAAGAATCTAGGCTTGGCTTGAGTGGTTGAAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGAAGAGAGAAAGAATCTAGGCTTGGCTTGAGTGGTTGAAACC  782

seq1  CCAACAGCCACGCCCAGTGTACACTTCCTCCAATAAGGCCACACCTCCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCCACGCCCAGTGTACACTTCCTCCAATAAGGCCACACCTCCTA  832

seq1  ATCCCTGTCATGTATTGCCACTCCCTAAGGACCAAATATTTGAATATAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTCATGTATTGCCACTCCCTAAGGACCAAATATTTGAATATAAG  882

seq1  AGCCTATGGAGGCCATTCCTATTCAAACCCCCACAGGGAGCGCAAATGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATGGAGGCCATTCCTATTCAAACCCCCACAGGGAGCGCAAATGAA  932

seq1  GGAATCCTCTCCTAGCCAAGTGAGGAGAAATGAATGAATTC  990
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCTCTCCTAGCCAAGTGAGGAGAAATGAATGAATTC  973