BAC Information

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BAC

Clone NameB6Ng01-161H06
Chromosome5 (Build37)
Map Location 121,485,349 - 121,672,567
singlet/doubletdoublet
Overlap geneLOC665299, Ptpn11, Rpl6, LOC100039686, EG545802
Upstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a
Downstream geneAU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161H06.bB6Ng01-161H06.g
ACCDH954558DH954559
length846145
definitionDH954558|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H06, 5' end.DH954559|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,671,725 - 121,672,567)(121,485,349 - 121,485,493)
sequence
gaattccaggccagcctggatttcatagcatccgggccagggttattcag
tgagaccctgtctcaaaaaattaaagatcttgagcaaactgcacatttgc
tctgctcggctcttgctacatctgcacaatggatacaactgttgcaacaa
gtaacaagatttaccttctagagttctttgagactttaacaagatagcat
ctgacagaatggatacagttaagaattattattaactaggtaagtgtgtg
actagcagactacttacttctctagatactgtagtctgtaactggaaaag
actaaaaacaaaacagctctattcctgctggtcccagtgtgtatcactca
cgaccgttcctttttgagaagacttaatctactcggccatagtctttcct
tagctgtatgtgtcactcaggacagagacagtaaacattttagtaatgtt
aactgaataacttggtttttaaaaataccctcttctaatccgaatacatc
aaacggtctgggttcaagaaatttaggttagtctctaaggaacaaagagc
accatccactttccactttccacagcagcgcccattaaataaagagtcta
ccatcataccatcagagccctgcagtttttcaggtggttaactcagacac
accttgctttttatagaataggctcaaataaaacataaatgtattatgat
tccacgttagggattctctatcgactcccatattatcgtggctagactgt
aaaatatgccaattaagagttcacagtcgggaaattctgaagcaacctca
aagccagacacaaacaacagcggaccgcattccgcatctcgagcat
acattaagacactgaccacatgcaaagccgttctctcattgaccctggca
ctcatctgacatggacaacccatatacataagttcacagtgttaaaggaa
ggattggtgacagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121671725_121672567
seq2: B6Ng01-161H06.b_45_890 (reverse)

seq1  ATGCTCGAGATGC-GAATGCGGTCCGCTGTTGTTTGTGTCTGGCTTTGAG  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGCTCGAGATGCGGAATGCGGTCCGCTGTTGTTTGTGTCTGGCTTTGAG  50

seq1  GTTGCTTCAGAATTT-CCGACTGTGAACTCTTAATTGGCATATTTTACAG  98
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCAGAATTTCCCGACTGTGAACTCTTAATTGGCATATTTTACAG  100

seq1  TCTAGCCACGATAATATGGGAGTCGATAGAGAATCCCTAACGTGGAATCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCACGATAATATGGGAGTCGATAGAGAATCCCTAACGTGGAATCA  150

seq1  TAATACATTTATGTTTTATTTGAGCCTATTCTATAAAAAGCAAGGTGTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATTTATGTTTTATTTGAGCCTATTCTATAAAAAGCAAGGTGTGT  200

seq1  CTGAGTTAACCACCTG-AAAACTGCAGGGCTCTGATGGTATGATGGTAGA  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGAGTTAACCACCTGAAAAACTGCAGGGCTCTGATGGTATGATGGTAGA  250

seq1  CTCTTTATTTAATGGGCGCTGCTGTGGAAAGTGGAAAGTGGATGGTGCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTTAATGGGCGCTGCTGTGGAAAGTGGAAAGTGGATGGTGCTC  300

seq1  TTTGTTCCTTAGAGACTAACCTAAATTTCTTGAACCCAGACCGTTTGATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTTAGAGACTAACCTAAATTTCTTGAACCCAGACCGTTTGATG  350

seq1  TATTCGGATTAGAAGAGGGTATTTTTAAAAACCAAGTTATTCAGTTAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGGATTAGAAGAGGGTATTTTTAAAAACCAAGTTATTCAGTTAACA  400

seq1  TTACTAAAATGTTTACTGTCTCTGTCCTGAGTGACACATACAGCTAAGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAATGTTTACTGTCTCTGTCCTGAGTGACACATACAGCTAAGGA  450

seq1  AAGACTATGGCCGAGTAGATTAAGTCTTCTCAAAAAGGAACGGTCGTGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATGGCCGAGTAGATTAAGTCTTCTCAAAAAGGAACGGTCGTGAG  500

seq1  TGATACACACTGGGACCAGCAGGAATAGAGCTGTTTTGTTTTTAGTCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACACTGGGACCAGCAGGAATAGAGCTGTTTTGTTTTTAGTCTTT  550

seq1  TCCAGTTACAGACTACAGTATCTAGAGAAGTAAGTAGTCTGCTAGTCACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTACAGACTACAGTATCTAGAGAAGTAAGTAGTCTGCTAGTCACA  600

seq1  CACTTACCTAGTTAATAATAATTCTTAACTGTATCCATTCTGTCAGATGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACCTAGTTAATAATAATTCTTAACTGTATCCATTCTGTCAGATGC  650

seq1  TATCTTGTTAAAGTCTCAAAGAACTCTAGAAGGTAAATCTTGTTACTTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTTAAAGTCTCAAAGAACTCTAGAAGGTAAATCTTGTTACTTGT  700

seq1  TGCAACAGTTGTATCCATTGTGCAGATGTAGCAAGAGCCGAGCAGAGCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGTTGTATCCATTGTGCAGATGTAGCAAGAGCCGAGCAGAGCAA  750

seq1  ATGTGCAGTTTGCTCAAGATCTTTAATTTTTTGAGACAGGGTCTCACTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGTTTGCTCAAGATCTTTAATTTTTTGAGACAGGGTCTCACTGA  800

seq1  ATAACCCTGGCCCGGATGCTATGAAATCCAGGCTGGCCTGGAATTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCTGGCCCGGATGCTATGAAATCCAGGCTGGCCTGGAATTC  846

seq1: chr5_121485349_121485493
seq2: B6Ng01-161H06.g_76_220

seq1  ACATTAAGACACTGACCACATGCAAAGCCGTTCTCTCATTGACCCTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGACACTGACCACATGCAAAGCCGTTCTCTCATTGACCCTGGCA  50

seq1  CTCATCTGACATGGACAACCCATATACATAAGTTCACAGTGTTAAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGACATGGACAACCCATATACATAAGTTCACAGTGTTAAAGGAA  100

seq1  GGATTGGTGACAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGTGACAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  145