BAC Information

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BAC

Clone NameB6Ng01-161I02
Chromosome5 (Build37)
Map Location 17,565,956 - 17,737,689
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
Downstream geneGnai1, LOC100041818, LOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161I02.bB6Ng01-161I02.g
ACCDH954598DH954599
length1,1461,163
definitionDH954598|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I02, 5' end.DH954599|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,565,956 - 17,567,111)(17,736,530 - 17,737,689)
sequence
gaattccagaaagttctctagtccctatatctttctcctttctaagctac
aaacttccagtttctaggactctaaccataagcccaattttcaggaaaag
aacaggcactaaacccctcttgagacaatagtggatcctggctttagtgt
ataaaataatcccacctgtagcctcacttatcagaacaatgagataagaa
aagaaacatttctaaacaatgttttgagatgtaacttgagacccaccaaa
tcagtttctgtgtatagtgctcagacactctattgcttagtcctctagag
agaaccaagtcccacacttgggtaagcctaactttctgcaactcttttca
gtgtctctcatactggtatctcaccttcctcgcagcatctttcctcttag
ccctctggactttatgcttactttaattaatctttattcaaatagcctac
tctactttattatatctggtagtctcatttttttttcagcatcagaccta
tacatccagtttgacctgaagtgaggccccctcaaagtctaggaaaactc
ccaaggatgctgagaagtagggagctataactatcatcaccacttagagt
aactcattaatgactatcatgaacatatatagggatgctttagttaggaa
acaattgtcagttcggtttgagtataatgtggggaaaataagactcacag
aatgttattttgtattcttaatcaagagtttcctaagatcctttaaaatt
ttttgaaattataaagatttgtatttagatgttgtgctgtctagttttat
gtaaacataacacaagatagagttaactgaaaggagagagcttcaagtga
gaaaatgtatgccttcataaggatctcgtgtagggattttcttaactagt
aactgatgagctaggactcagcccaatatagatgatactatccatagact
ggtggtcctgagtatatagagagcacactgaacagccatgggtagtaggc
agagtagcagtaccctcattgtctctgcattagctctgtcttcagttttg
gcccagtttgagtccttgtttttgttaagggacatggttagtatacgccc
aaattaactctctcctctctaactgcttttgtcattgatggcttcc
gaattcttttttgcagtggaaaccagagatgcttcttcgaatcaaagtat
aagaaaagagggagacatggttaaacttatgaaaaagatgttttagtacg
tgggcaaatgaggtgagcaggcatggaattaagtatttatgatggccatt
ggtagctattgtctacatatctgtgcttgccattcatatgttgaaattgt
atattcctgggtggtaccattagggaacacaacgactccttgtctaatgt
attttatttagggtaggaaaccagcccttgggatggcactgccactctca
gggtaggtcttacctcttgggagactttgctgaaaaactcttcaaagatg
tgcacagagctatgtttctatggtgattttatattgagtcgagttggcaa
tgaagattatgcatcacacctattctacagaaaaatatcccaactttgtg
ttcgactagcagtatattctatctattgccaggcatgaacgtggtcattc
acaggtagcatagcatgaatctacgtgcaatccagagcacttgtttttag
tctgaattctagatctcttatgtgcagtctctatgtgacttctgatatgg
gcagatagatttcagggtcacagcagacatctatttgcaatccagtgcac
ttgtttttaatctgatttctaagtctcacatgtgtactgtctatgtgact
tctggaaagcatttttaaggtttcctttctgaatttcaactttcttagtt
ctaatacaaaagccttattgcaatatgaacaaaaattcatttctgatgat
tgttacctggttatatttcatctattggcctattgttttcatacataatt
aaagggctattttcagaaaaaatcaatttattatggtaaattttaaaatg
acaaaattgtcctgaattattttaaggtcacccaacatttatgaatttaa
aagttcaaactaaaagttggagagatggttcacagttaaagcatggatgt
cttttgcacaagactagatttcagcttccagaatcttaaagttgttcaaa
gatgcctattaatagcttagagaaactggacatgcctttctggtctctgc
gaagtgctacctcatgtggatgtatctgcagacccatgcctcatgctaac
cgtaattaaacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17565956_17567111
seq2: B6Ng01-161I02.b_47_1192

seq1  GAATTCCAGAAAGTTCTCTAGTCCCTATATCTTTCTCCTTTCTAAGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGTTCTCTAGTCCCTATATCTTTCTCCTTTCTAAGCTAC  50

seq1  AAACTTCCAGTTTCTAGGACTCTAACCATAAGCCCAATTTTCAGGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCAGTTTCTAGGACTCTAACCATAAGCCCAATTTTCAGGAAAAG  100

seq1  AACAGGCACTAAACCCCTCTTGAGACAATAGTGGATCCTGGCTTTAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCACTAAACCCCTCTTGAGACAATAGTGGATCCTGGCTTTAGTGT  150

seq1  ATAAAATAATCCCACCTGTAGCCTCACTTATCAGAACAATGAGATAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATCCCACCTGTAGCCTCACTTATCAGAACAATGAGATAAGAA  200

seq1  AAGAAACATTTCTAAACAATGTTTTGAGATGTAACTTGAGACCCACCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATTTCTAAACAATGTTTTGAGATGTAACTTGAGACCCACCAAA  250

seq1  TCAGTTTCTGTGTATAGTGCTCAGACACTCTATTGCTTAGTCCTCTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCTGTGTATAGTGCTCAGACACTCTATTGCTTAGTCCTCTAGAG  300

seq1  AGAACCAAGTCCCACACTTGGGTAAGCCTAACTTTCTGCAACTCTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAGTCCCACACTTGGGTAAGCCTAACTTTCTGCAACTCTTTTCA  350

seq1  GTGTCTCTCATACTGGTATCTCACCTTCCTCGCAGCATCTTTCCTCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTCATACTGGTATCTCACCTTCCTCGCAGCATCTTTCCTCTTAG  400

seq1  CCCTCTGGACTTTATGCTTACTTTAATTAATCTTTATTCAAATAGCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGACTTTATGCTTACTTTAATTAATCTTTATTCAAATAGCCTAC  450

seq1  TCTACTTTATTATATCTGGTAGTCTCATTTTTTTTTCAGCATCAGACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTATTATATCTGGTAGTCTCATTTTTTTTTCAGCATCAGACCTA  500

seq1  TACATCCAGTTTGACCTGAAGTGAGGCCCCCTCAAAGTCTAGGAAAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAGTTTGACCTGAAGTGAGGCCCCCTCAAAGTCTAGGAAAACTC  550

seq1  CCAAGGATGCTGAGAAGTAGGGAGCTATAACTATCATCACCACTTAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATGCTGAGAAGTAGGGAGCTATAACTATCATCACCACTTAGAGT  600

seq1  AACTCATTAATGACTATCATGAACATATATAGGGATGCTTTAGTTAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTAATGACTATCATGAACATATATAGGGATGCTTTAGTTAGGAA  650

seq1  ACAATTGTCAGTTCGGTTTGAGTATAATGTGGGGAAAATAAGACTCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTCAGTTCGGTTTGAGTATAATGTGGGGAAAATAAGACTCACAG  700

seq1  AATGTTATTTTGTATTCTTAATCAAGAGTTTCCTAAGATCCTTTAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTTTGTATTCTTAATCAAGAGTTTCCTAAGATCCTTTAAAATT  750

seq1  TTTTGAAATTATAAAGATTTGTATTTAGATGTTGTGCTGTCTAGTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATTATAAAGATTTGTATTTAGATGTTGTGCTGTCTAGTTTTAT  800

seq1  GTAAACATAACACAAGATAGAGTTAACTGAAAGGAGAGAGCTTCAAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATAACACAAGATAGAGTTAACTGAAAGGAGAGAGCTTCAAGTGA  850

seq1  GAAAATGTATGCCTTCATAA-GATCTCGTGTAGGGATTTTCTTAACTAGT  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAAATGTATGCCTTCATAAGGATCTCGTGTAGGGATTTTCTTAACTAGT  900

seq1  AACTGATGAGCTAGGACTCAGCCCAATATAGATGATACTATCCATAGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGAGCTAGGACTCAGCCCAATATAGATGATACTATCCATAGACT  950

seq1  GGTGGTCCTGAGTTATATAAGAGAGCACACTGAACAAGCCATGGGTAGTA  999
      |||||||||||| ||||| |||||||||||||||| ||||||||||||| 
seq2  GGTGGTCCTGAG-TATAT-AGAGAGCACACTGAAC-AGCCATGGGTAGT-  996

seq1  AGCCAGAGTAAGCAGTACCCCTCCATTGTCTCTGCATTAGCTCCTGTCTC  1049
      || |||||| ||||||||||   ||||||||||||||||||| |||||| 
seq2  AGGCAGAGT-AGCAGTACCC--TCATTGTCTCTGCATTAGCT-CTGTCTT  1042

seq1  CAGGTTTTTGCCCAGTTTGAGTCCCTGTCTTTGTTTAGTGACAATGGTAA  1099
      || ||||| ||||||||||||||| ||| |||||| || ||| |||||  
seq2  CA-GTTTTGGCCCAGTTTGAGTCCTTGTTTTTGTTAAGGGAC-ATGGT-T  1089

seq1  AGTATACG-CCAAATCAACCCTTTCCTCTCTAACTTGCTTTTTGGTCA-T  1147
      |||||||| |||||| ||| || ||||||||||| |||||||  |||| |
seq2  AGTATACGCCCAAATTAACTCTCTCCTCTCTAAC-TGCTTTT--GTCATT  1136

seq1  GAT-GCTTCC  1156
      ||| ||||||
seq2  GATGGCTTCC  1146

seq1: chr5_17736530_17737689
seq2: B6Ng01-161I02.g_65_1227 (reverse)

seq1  ACGTTTAATTACGTGTTTGCATGTGAGCATGGGGCTGCAG-TACATACCA  49
      ||||||||||||| ||| ||||| | ||||||| |||||| ||||| |||
seq2  ACGTTTAATTACG-GTTAGCATGAG-GCATGGGTCTGCAGATACAT-CCA  47

seq1  CATGAGTGTAGGCATCTGCAGAGACCAGAAAAGCATGT-CAGGTTCTCTT  98
      |||||| ||||   |  |||||||||||||| |||||| ||| ||||| |
seq2  CATGAG-GTAGCACTTCGCAGAGACCAGAAAGGCATGTCCAGTTTCTC-T  95

seq1  AAGCTATT-ATAGGCATCTGTGAACCACCTTAAGATTCTGGGAGCTGAAA  147
      |||||||| |||||||||| ||||| || |||||||||||| ||||||||
seq2  AAGCTATTAATAGGCATCTTTGAACAACTTTAAGATTCTGGAAGCTGAAA  145

seq1  TCTAGTCCTGTGCAAAAGACATCCATGCTTTTAACTGTTGAACCATCTCT  197
      ||||||| |||||||||||||||||||| |||||||| ||||||||||||
seq2  TCTAGTCTTGTGCAAAAGACATCCATGC-TTTAACTG-TGAACCATCTCT  193

seq1  CCAACCTTTAGTTTGAACTTTTAAATTCAT-AATGTTGGGTGACCTT-AC  245
      ||||| |||||||||||||||||||||||| |||||||||||||||| | 
seq2  CCAACTTTTAGTTTGAACTTTTAAATTCATAAATGTTGGGTGACCTTAAA  243

seq1  ATAATTCAGGACAATTTTGTCATTTT-AAATTTAACATAAT-AATTGATT  293
      |||||||||||||||||||||||||| ||||||| |||||| ||||||||
seq2  ATAATTCAGGACAATTTTGTCATTTTAAAATTTACCATAATAAATTGATT  293

seq1  TTGTCCTGAAATAGCCCTTTAA-TATGTATGAAAAC-ATAGGCC-ATAGA  340
      || ||   |||||||||||||| ||||||||||||| ||||||| |||||
seq2  TTTTCTGAAAATAGCCCTTTAATTATGTATGAAAACAATAGGCCAATAGA  343

seq1  TGAAATATCACCAGGTAACATTCATCAGAAATGAATTTTTGTTCATATTG  390
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAATATAACCAGGTAACAATCATCAGAAATGAATTTTTGTTCATATTG  393

seq1  CAATAAGGCTTTTGTATTAGAACTAAGAAAGTTGAAATTCAGAAAGGAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGGCTTTTGTATTAGAACTAAGAAAGTTGAAATTCAGAAAGGAAA  443

seq1  CCTTAAAAATGCTTTCCAGAAGTCACATAGACAGTACACATGTGAGACTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAATGCTTTCCAGAAGTCACATAGACAGTACACATGTGAGACTT  493

seq1  AGAAATCAGATTAAAAACAAGTGCACTGGATTGCAAATAGATGTCTGCTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAGATTAAAAACAAGTGCACTGGATTGCAAATAGATGTCTGCTG  543

seq1  TGACCCTGAAATCTATCTGCCCATATCAGAAGTCACATAGAGACTGCACA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGAAATCTATCTGCCCATATCAGAAGTCACATAGAGACTGCACA  593

seq1  TAAGAGATCTAGAATTCAGACTAAAAACAAGTGCTCTGGATTGCACGTAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATCTAGAATTCAGACTAAAAACAAGTGCTCTGGATTGCACGTAG  643

seq1  ATTCATGCTATGCTACCTGTGAATGACCACGTTCATGCCTGGCAATAGAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCTATGCTACCTGTGAATGACCACGTTCATGCCTGGCAATAGAT  693

seq1  AGAATATACTGCTAGTCGAACACAAAGTTGGGATATTTTTCTGTAGAATA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATACTGCTAGTCGAACACAAAGTTGGGATATTTTTCTGTAGAATA  743

seq1  GGTGTGATGCATAATCTTCATTGCCAACTCGACTCAATATAAAATCACCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATGCATAATCTTCATTGCCAACTCGACTCAATATAAAATCACCA  793

seq1  TAGAAACATAGCTCTGTGCACATCTTTGAAGAGTTTTTCAGCAAAGTCTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACATAGCTCTGTGCACATCTTTGAAGAGTTTTTCAGCAAAGTCTC  843

seq1  CCAAGAGGTAAGACCTACCCTGAGAGTGGCAGTGCCATCCCAAGGGCTGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGGTAAGACCTACCCTGAGAGTGGCAGTGCCATCCCAAGGGCTGG  893

seq1  TTTCCTACCCTAAATAAAATACATTAGACAAGGAGTCGTTGTGTTCCCTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACCCTAAATAAAATACATTAGACAAGGAGTCGTTGTGTTCCCTA  943

seq1  ATGGTACCACCCAGGAATATACAATTTCAACATATGAATGGCAAGCACAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACCACCCAGGAATATACAATTTCAACATATGAATGGCAAGCACAG  993

seq1  ATATGTAGACAATAGCTACCAATGGCCATCATAAATACTTAATTCCATGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGACAATAGCTACCAATGGCCATCATAAATACTTAATTCCATGC  1043

seq1  CTGCTCACCTCATTTGCCCACGTACTAAAACATCTTTTTCATAAGTTTAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACCTCATTTGCCCACGTACTAAAACATCTTTTTCATAAGTTTAA  1093

seq1  CCATGTCTCCCTCTTTTCTTATACTTTGATTCGAAGAAGCATCTCTGGTT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTCCCTCTTTTCTTATACTTTGATTCGAAGAAGCATCTCTGGTT  1143

seq1  TCCACTGCAAAAAAGAATTC  1160
      ||||||||||||||||||||
seq2  TCCACTGCAAAAAAGAATTC  1163