BAC Information

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BAC

Clone NameB6Ng01-161I24
Chromosome5 (Build37)
Map Location 116,248,629 - 116,440,127
singlet/doubletdoublet
Overlap geneLOC665032, Cit
Upstream geneAnkrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
Downstream genePrkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161I24.bB6Ng01-161I24.g
ACCDH954642DH954643
length1,190733
definitionDH954642|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I24, 5' end.DH954643|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,248,629 - 116,249,801)(116,439,395 - 116,440,127)
sequence
gaattccttagattgctaggttaaaatgcagattccatgtcccccttgat
aagcccaccaaattagattctctgggtgggaccagagctttgcgcactga
agatgatccctcaggtaattacaatgcacttatcagttcaagcacattgc
cttaggttggtgcttcaagcttggtgacttattaaaattacctgcagagc
aaaacaaagcatcataaaacataagtctctctctctctctctctctctct
ctctctctctctcacacacacacacacacatacacactcacaaataagta
attaaaaacaaaaaaaaacaaaaacaaaaacaaaaaaagggaaaagattt
aaagagaggacttgtctcccctatcactggtgtctgagcatctcttcgtg
gttgccatttgtaaaaattcttctcatcccttttagccactgtgctaagg
gtgagatgacatcacatctgaaagctgacattttgcaaagcgtataaaaa
gtaaacccagcacagcacatgataaatcgatccttgtatctcgtgagctg
actggttctggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaccaaaa
tcagacacagaaaagctcagaggtatctactgtgctagagcaggctgctg
gtaaatgctggctgaccaaaaggttaaggtaacaaaaataacaaaacctt
tcaaaccagggggggtctcccatggtgtagctccagacttcctgcctaag
gtttgcaagaactcccgggttcagctttcagcactgaaagtgaaagcata
tccctagcgtttgctggtctctctggtgtcaaatctcccgggggcagccc
aatttcaattaaccatccatgctaacaattagccggttcagaatagtaac
atcccagcccggccccattctaataggaggtgaataaactaggtcagctc
cagctcttattccggatgtggaagaactaacttattcccaccaagtgatc
ctaatggtagcaaaattgaccatgagcacaacgtcagtacttaagcacga
cttggaatcccagctttcatctatgaccggtttgaaaagagagcaggaat
ggcaggccgaagagcaagggttcccagtccaccgaacttagttaatggcc
cagctgtctgaaacgaaccagctttctttgtggcatgtga
gaattcctgtgtgtttcgtaaagctctgtggcttatagttaactctatac
agtagtttggggtgggggagtccttcattttgagtgagacccatcaactg
agatcaaggaaggaactgttccactgagtaatgccatggtgacacccagt
ttgagactgggtggaaggttttgggactttctgagaagggacacacttga
ccagcacgcacggtcgttgtctccacccatgctttagatctgaaatgaaa
gcctcagacttctcagttttaaggttcttggggaatggggataattttgc
aagaaaaaaaaaaaaaaccctaaagaatttcacacatgttcctggaatgt
ggaagaatgtgttggggaacaatgaaggggttcagctactcagatgtgtc
caaggtgtgagagacagagggatgagaaccaatccagatgtggaggcagg
agggtcggaagttcaaggacatcctcagctacgtaaaaagttccgaggct
agcctggggcacctacttcaaaaacctaagcaagtaagcaaataaaaaaa
agtcctgccaacaagtaatgaggttaaaaagaagacgcatgccacagacg
tgtgacaaagggcccgcagggtcatacgctgacggacttggttggggttc
atacctacagttaattcaaatgttaaaaaaaaataagtaaatgtacgtgt
tcaaaaaggaaaatgtgtagctaaatgttggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116248629_116249801
seq2: B6Ng01-161I24.b_48_1237

seq1  GAATTCCTTAGATTGCTAGGTTAAAATGCAGATTCCATGTCCCCCTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGATTGCTAGGTTAAAATGCAGATTCCATGTCCCCCTTGAT  50

seq1  AAGCCCACCAAATTAGATTCTCTGGGTGGGACCAGAGCTTTGCGCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACCAAATTAGATTCTCTGGGTGGGACCAGAGCTTTGCGCACTGA  100

seq1  AGATGATCCCTCAGGTAATTACAATGCACTTATCAGTTCAAGCACATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCCCTCAGGTAATTACAATGCACTTATCAGTTCAAGCACATTGC  150

seq1  CTTAGGTTGGTGCTTCAAGCTTGGTGACTTATTAAAATTACCTGCAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTTGGTGCTTCAAGCTTGGTGACTTATTAAAATTACCTGCAGAGC  200

seq1  AAAACAAAGCATCATAAAACATAAGTCTCTCTCTCTCTCTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGCATCATAAAACATAAGTCTCTCTCTCTCTCTCTCTCTCTCT  250

seq1  CTCTCTCTCTCTCACACACACACACACACATACACACTCACAAATAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCACACACACACACACACATACACACTCACAAATAAGTA  300

seq1  ATTAAAAACAAAAAAAAACAAAAACAAAAACAAAAAAAGGGAAAAGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACAAAAAAAAACAAAAACAAAAACAAAAAAAGGGAAAAGATTT  350

seq1  AAAGAGAGGACTTGTCTCCCCTATCACTGGTGTCTGAGCATCTCTTCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGACTTGTCTCCCCTATCACTGGTGTCTGAGCATCTCTTCGTG  400

seq1  GTTGCCATTTGTAAAAATTCTTCTCATCCCTTTTAGCCACTGTGCTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATTTGTAAAAATTCTTCTCATCCCTTTTAGCCACTGTGCTAAGG  450

seq1  GTGAGATGACATCACATCTGAAAGCTGACATTTTGCAAAGCGTATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGACATCACATCTGAAAGCTGACATTTTGCAAAGCGTATAAAAA  500

seq1  GTAAACCCAGCACAGCACATGATAAATCGATCCTTGTATCTCGTGAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCCAGCACAGCACATGATAAATCGATCCTTGTATCTCGTGAGCTG  550

seq1  ACTGGTTCTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACCAAAA  600

seq1  TCAGACACAGAAAAGCTCAGAGGTATCTACTGTGCTAGAGCAGGCTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACAGAAAAGCTCAGAGGTATCTACTGTGCTAGAGCAGGCTGCTG  650

seq1  GTAAATGCTGGCTGACC-AAAGGTT-AGGTAACAAAAATAACAAAACCTT  698
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  GTAAATGCTGGCTGACCAAAAGGTTAAGGTAACAAAAATAACAAAACCTT  700

seq1  TC-AACCA--GGGGGTCT-CCAT-GTGTAGCTCCAGACTTCCTGCCTAAG  743
      || |||||  |||||||| |||| ||||||||||||||||||||||||||
seq2  TCAAACCAGGGGGGGTCTCCCATGGTGTAGCTCCAGACTTCCTGCCTAAG  750

seq1  GTTTGCAAG-ACTCCC-GGTTCAGC-TTCAGCACTGAAAGTGAAAGCATA  790
      ||||||||| |||||| |||||||| ||||||||||||||||||||||||
seq2  GTTTGCAAGAACTCCCGGGTTCAGCTTTCAGCACTGAAAGTGAAAGCATA  800

seq1  T-CCTAGCGTTTGCTGGTCTCTCTGGTGTC-AATCTTCCCGGGGCAG-CC  837
      | |||||||||||||||||||||||||||| ||||| || ||||||| ||
seq2  TCCCTAGCGTTTGCTGGTCTCTCTGGTGTCAAATCTCCCGGGGGCAGCCC  850

seq1  AATTTCAATTTAGCCATCCATGCT-ACAATTAGCC-GTTCTAGATAGTAA  885
      |||||||| ||| ||||||||||| |||||||||| ||||   |||||||
seq2  AATTTCAA-TTAACCATCCATGCTAACAATTAGCCGGTTCAGAATAGTAA  899

seq1  CAT-CCAGCCC-GCCACATTCTAGTAGGAAGTTGAAATAACTAGTTCAGC  933
      ||| ||||||| ||| ||||||| |||| || ||||  |||||| |||||
seq2  CATCCCAGCCCGGCCCCATTCTAATAGG-AGGTGAATAAACTAGGTCAGC  948

seq1  TCCAGCTCTTATTTCTGATAGTG--AGAACTTAACTCATTCCCACCAAGT  981
      ||||||||||||| | ||| |||  ||||| ||||| |||||||||||| 
seq2  TCCAGCTCTTATTCCGGAT-GTGGAAGAAC-TAACTTATTCCCACCAAG-  995

seq1  TGATC--TATGTTAGCAAAATGGACCATGAGCAACAACG-CAGTAC-TAA  1027
      |||||   ||| ||||||||| |||||||||| |||||| |||||| |||
seq2  TGATCCTAATGGTAGCAAAATTGACCATGAGC-ACAACGTCAGTACTTAA  1044

seq1  GCACAGCCTGGAGT-CCAGC-TTCTACTATGACCGGTTTGAAAGGA-AGC  1074
      ||||  | |||| | ||||| |||  ||||||||||||||||| || |||
seq2  GCACGACTTGGAATCCCAGCTTTCATCTATGACCGGTTTGAAAAGAGAGC  1094

seq1  AAGGATGGCAGG-CGAAG-GCAAGGGTTCAC-GTCACCCCGAACTTATGT  1121
      | | |||||||| ||||| |||||||||| | ||| | ||||||||| ||
seq2  AGGAATGGCAGGCCGAAGAGCAAGGGTTCCCAGTC-CACCGAACTTA-GT  1142

seq1  TAAATGCCCAGCTGCCTGGAACAGGACCAGCTTTTCCTTTTGTGTCATGT  1171
      |||  ||||||||| ||| ||| | |||||||||    |||||| |||||
seq2  TAATGGCCCAGCTGTCTGAAAC-GAACCAGCTTT---CTTTGTGGCATGT  1188

seq1  GA  1173
      ||
seq2  GA  1190

seq1: chr5_116439395_116440127
seq2: B6Ng01-161I24.g_69_801 (reverse)

seq1  TTCCAACATTTAGCTACACATTTTTCCTTTCTGAACACGTACATTTACTT  50
      | |||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TCCCAACATTTAGCTACACA-TTTTCCTTTTTGAACACGTACATTTACTT  49

seq1  ATTTTTTTTTAACATTTGAATTAACTGTAGGTATGAACCCCAACCAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTAACATTTGAATTAACTGTAGGTATGAACCCCAACCAAGTC  99

seq1  CGTCAGCGTATGACCCTGCGGGCCCTTTGTCACACGTCTGTGGCATGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGCGTATGACCCTGCGGGCCCTTTGTCACACGTCTGTGGCATGCGT  149

seq1  CTTCTTTTTAACCTCATTACTTGTTGGCAGGAC-TTTTTTTATTTGCTTA  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTCTTTTTAACCTCATTACTTGTTGGCAGGACTTTTTTTTATTTGCTTA  199

seq1  CTTGCTTAGGTTTTTGAAGTAGGTGCCCCAGGCTAGCCTCGGAACTTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTAGGTTTTTGAAGTAGGTGCCCCAGGCTAGCCTCGGAACTTTTT  249

seq1  ACGTAGCTGAGGATGTCCTTGAACTTCCGACCCTCCTGCCTCCACATCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGCTGAGGATGTCCTTGAACTTCCGACCCTCCTGCCTCCACATCTG  299

seq1  GATTGGTTCTCATCCCTCTGTCTCTCACACCTTGGACACATCTGAGTAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTCTCATCCCTCTGTCTCTCACACCTTGGACACATCTGAGTAGC  349

seq1  TGAACCCCTTCATTGTTCCCCAACACATTCTTCCACATTCCAGGAACATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCCTTCATTGTTCCCCAACACATTCTTCCACATTCCAGGAACATG  399

seq1  TGTGAAATTCTTTAGGGTTTTTTTTTTTTTTCTTGCAAAATTATCCCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTCTTTAGGGTTTTTTTTTTTTTTCTTGCAAAATTATCCCCAT  449

seq1  TCCCCAAGAACCTTAAAACTGAGAAGTCTGAGGCTTTCATTTCAGATCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGAACCTTAAAACTGAGAAGTCTGAGGCTTTCATTTCAGATCTA  499

seq1  AAGCATGGGTGGAGACAACGACCGTGCGTGCTGGTCAAGTGTGTCCCTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGGTGGAGACAACGACCGTGCGTGCTGGTCAAGTGTGTCCCTTC  549

seq1  TCAGAAAGTCCCAAAACCTTCCACCCAGTCTCAAACTGGGTGTCACCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGTCCCAAAACCTTCCACCCAGTCTCAAACTGGGTGTCACCATG  599

seq1  GCATTACTCAGTGGAACAGTTCCTTCCTTGATCTCAGTTGATGGGTCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACTCAGTGGAACAGTTCCTTCCTTGATCTCAGTTGATGGGTCTCA  649

seq1  CTCAAAATGAAGGACTCCCCCACCCCAAACTACTGTATAGAGTTAACTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATGAAGGACTCCCCCACCCCAAACTACTGTATAGAGTTAACTAT  699

seq1  AAGCCACAGAGCTTTACGAAACACACAGGAATTC  733
      ||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGAGCTTTACGAAACACACAGGAATTC  733