BAC Information

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BAC

Clone NameB6Ng01-161L06
Chromosome5 (Build37)
Map Location 49,110,093 - 49,225,079
singlet/doubletdoublet
Overlap geneKcnip4
Upstream geneLOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161L06.bB6Ng01-161L06.g
ACCDH954743DH954744
length1,1361,069
definitionDH954743|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L06, 5' end.DH954744|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,223,925 - 49,225,079)(49,110,093 - 49,111,163)
sequence
gaattcttcttatacaaatataatgtaaggaaaagctaccatgcttcact
ttctgaagtttgctgtttcctctgcagttttagtaatatacagctcagtt
aacttcttctttcaaagcctaaaggaatatcaagaagaaaccccatctaa
ccctttcttattataaaagcatcacaggaagagacttgcacaggacagtg
tccttggttactgggacagtatcatgcttgaatatagtaaataagcagct
aactactactctacattttaaacaatcctgtccacatgcttctactttaa
gacattgagcttattaaatatgtaaagtttaggaggacatggagaccaaa
ggaagaggaaaagtcttttaaaaagaaatggtagattgcatctgtgatca
ggctgtggagttcattggtagattgcatctgtgatcaggctgtggagttc
attggtagagtgcatctgtgatcaggctgtggagttcattggtagattgc
atctgtgatcaggctgtggagttcattggtagattgcatctgtgatcagg
ctgtggagttcactggtttcatgatacctggtgttaccccaatgaatgtg
aagaagcagttacagtttccctctacaataatgttcaggtttaggactta
caacgccaatacaaggtcatgttcaaacatgaccagttattaaataatgg
aaggaatccctctccatttcaactgcaatgtctatgaactgttgtatggc
atctcacaaatacaaaatataatacaacattataacacaactagaaaatt
gctgtcctatttgaacatttaatgcttgtttctcttaaaatgggttacct
ctctaactcttagtctttgagtgatatttaccaaatatgtacttatataa
ttaagtgaattttctagattaggagatgatacatgttattgcttccagcc
aactttaattttgttccaatgggcttattgaattccccaccttaatcaca
tgcacttcctcttcttattccatttgccccatttgctctcccaggatttt
gggaaagattgtaactatgcacaaggatttcttttttttcattaaggtcc
catgctccatttgaaatttgtaacaaatggacaaat
gaattcaagcatatctaaatgatgaggaatcccccacccacactccctgc
tcagtagtgaaataaataatactagaattaagggttagaattttaggtaa
gaagaaacaaaaacaaacagaatgtttattctgtgtctgctcctgaacaa
gaaaaaaggggcatctaattgaataccaacatgtcataattagttttttt
ccataaacgcatcagttagcccttttaaatctaagtctagaaataagatc
tatttttcttctactttctttggttaattgtactgagcatgttgcagtga
atgcctaattacttgatgtggcccagacacacctatagtggacttccttc
tcctgatgccatttcaataagtgcaactatcctcacctctgaaacacagc
acacagatggcaaagaagagcttgtgttccaaagagttcctccatccaac
ctagactttcccaattgctgaaagaatactaagaccaaagttgctaaata
taaacaaagtactcagcactgttttattttattattattattattattat
tattattattattattattattatatattttctttatttgcatttcaaat
gttaccccctttcctggtttcccctcagaaaatccctatcccctccccca
tacccctgctcaccaacccacccactccacctcctggccctggcattccc
ctacactggggcatggagcctacacaggaccagggctctctcctcccatt
gatgactgactaggccatcctctgctacatatgcagctggagtcatgagt
cccaccatgtgtactctatggttggtggtttagtcccttgggagctctgg
ggggtactggatagtccatatttgttgtttctccaatgggctgcaaaccc
tttccagctccttgagtcttttcctaactccttcactggggaccctgtgc
ttctgtccagtgaatgtagcgttgtttttctagtttgcaagtcaatatac
ggattagggctgaagatcactttctgggacttacatttttttttcacggt
gacatgttaatagattttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49223925_49225079
seq2: B6Ng01-161L06.b_44_1179 (reverse)

seq1  ATTTGGTTCCATTTGTTACAAAATAGTGAAATGGAGCATGGAGCTTTAAT  50
      |||||  ||||||||||||||| |  | |||||||||||||  | |||||
seq2  ATTTG--TCCATTTGTTACAAATT--TCAAATGGAGCATGGGACCTTAAT  46

seq1  GGATAAAAAAGATATTCTTTGTGTATTATTTTTTACAAATCTATCCCAAT  100
       || |||||||| | || ||||| |    |  |||| ||||| |||||| 
seq2  -GAAAAAAAAGA-AATCCTTGTGCA----TAGTTAC-AATCTTTCCCAA-  88

seq1  ATTCCTGGGAAGAGCAGATGGGGCAAATGGACATAAGAAGAGGATGTGCA  150
      | ||||||| |||||| |||||||||||||| |||||||||||| |||||
seq2  AATCCTGGG-AGAGCAAATGGGGCAAATGGA-ATAAGAAGAGGAAGTGCA  136

seq1  TGTGACTGAAGGTGGGGGATTTCCAT-AGCCCATTTGGACAAAATTTAAG  199
      ||||| | ||||| ||||| ||| || |||||||| | |||||||| |||
seq2  TGTGA-TTAAGGT-GGGGAATTCAATAAGCCCATTGGAACAAAATTAAAG  184

seq1  TGGGCTGGAAGCAAT-ACATGTATCATCTCCTTTATCTAGAAAAATCACT  248
      | ||||||||||||| ||||||||||||||| | |||||||||| |||||
seq2  TTGGCTGGAAGCAATAACATGTATCATCTCC-TAATCTAGAAAATTCACT  233

seq1  TAATATTATAAGTACATATTTGGTAAATATCACTCAAAGACTAAGAGTTA  298
      ||||  ||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAATTATATAAGTACATATTTGGTAAATATCACTCAAAGACTAAGAGTT-  282

seq1  AGAGAGGTAACCCATTTTAAGAGAAACAAGCATTAAATGTTCAAATAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTAACCCATTTTAAGAGAAACAAGCATTAAATGTTCAAATAGGA  332

seq1  CAGCAATTTTTCTAGTTGTGTTATAATGTTGTATTATATTTTTGTATTTG  398
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGCAA-TTTTCTAGTTGTGTTATAATGTTGTATTATA-TTTTGTATTTG  380

seq1  TGAGATGCCATACAACAAGTTCATAGACATTGCAGTTGAAATGGAGAGGG  448
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAGATGCCATACAAC-AGTTCATAGACATTGCAGTTGAAATGGAGAGGG  429

seq1  ATTCCTTCCATTATTTAATAACTGGTCATGTTTGAACATGACCTTGTATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCCATTATTTAATAACTGGTCATGTTTGAACATGACCTTGTATT  479

seq1  GGCGTTGTAAGTCCTAAACCTGAACATTATTGTAGAGGGAAACTGTAACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTGTAAGTCCTAAACCTGAACATTATTGTAGAGGGAAACTGTAACT  529

seq1  GCTTCTTCACATTCATTGGGGTAACACCAGGTATCATGAAACCAGTGAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCACATTCATTGGGGTAACACCAGGTATCATGAAACCAGTGAAC  579

seq1  TCCACAGCCTGATCACAGATGCAATCTACCAATGAACTCCACAGCCTGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCCTGATCACAGATGCAATCTACCAATGAACTCCACAGCCTGAT  629

seq1  CACAGATGCAATCTACCAATGAACTCCACAGCCTGATCACAGATGCACTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGCAATCTACCAATGAACTCCACAGCCTGATCACAGATGCACTC  679

seq1  TACCAATGAACTCCACAGCCTGATCACAGATGCAATCTACCAATGAACTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATGAACTCCACAGCCTGATCACAGATGCAATCTACCAATGAACTC  729

seq1  CACAGCCTGATCACAGATGCAATCTACCATTTCTTTTTAAAAGACTTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTGATCACAGATGCAATCTACCATTTCTTTTTAAAAGACTTTTC  779

seq1  CTCTTCCTTTGGTCTCCATGTCCTCCTAAACTTTACATATTTAATAAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTTGGTCTCCATGTCCTCCTAAACTTTACATATTTAATAAGCT  829

seq1  CAATGTCTTAAAGTAGAAGCATGTGGACAGGATTGTTTAAAATGTAGAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTAAAGTAGAAGCATGTGGACAGGATTGTTTAAAATGTAGAGT  879

seq1  AGTAGTTAGCTGCTTATTTACTATATTCAAGCATGATACTGTCCCAGTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTAGCTGCTTATTTACTATATTCAAGCATGATACTGTCCCAGTAA  929

seq1  CCAAGGACACTGTCCTGTGCAAGTCTCTTCCTGTGATGCTTTTATAATAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACACTGTCCTGTGCAAGTCTCTTCCTGTGATGCTTTTATAATAA  979

seq1  GAAAGGGTTAGATGGGGTTTCTTCTTGATATTCCTTTAGGCTTTGAAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTTAGATGGGGTTTCTTCTTGATATTCCTTTAGGCTTTGAAAGA  1029

seq1  AGAAGTTAACTGAGCTGTATATTACTAAAACTGCAGAGGAAACAGCAAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTAACTGAGCTGTATATTACTAAAACTGCAGAGGAAACAGCAAAC  1079

seq1  TTCAGAAAGTGAAGCATGGTAGCTTTTCCTTACATTATATTTGTATAAGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGTGAAGCATGGTAGCTTTTCCTTACATTATATTTGTATAAGA  1129

seq1  AGAATTC  1155
      |||||||
seq2  AGAATTC  1136

seq1: chr5_49110093_49111163
seq2: B6Ng01-161L06.g_70_1137

seq1  GAATTCAAGCATATCTAAATGATGAGGAATCCCCCACCCACACTCCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCATATCTAAATGATGAGGAATCCCCCACCCACACTCCCTGC  50

seq1  TCAGTAGTGAAATAAATAATACTAGAATTAAGGGTTAGAATTTTAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTGAAATAAATAATACTAGAATTAAGGGTTAGAATTTTAGGTAA  100

seq1  GAAGAAACAAAAACAAACAGAATGTTTATTCTGTGTCTGCTCCTGAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACAAAAACAAACAGAATGTTTATTCTGTGTCTGCTCCTGAACAA  150

seq1  GAAAAAAGGGGCATCTAATTGAATACCAACATGTCATAATTAGTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGGGCATCTAATTGAATACCAACATGTCATAATTAGTTTTTTT  200

seq1  CCATAAACGCATCAGTTAGCCCTTTTAAATCTAAGTCTAGAAATAAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACGCATCAGTTAGCCCTTTTAAATCTAAGTCTAGAAATAAGATC  250

seq1  TATTTTTCTTCTACTTTCTTTGGTTAATTGTACTGAGCATGTTGCAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTTCTACTTTCTTTGGTTAATTGTACTGAGCATGTTGCAGTGA  300

seq1  ATGCCTAATTACTTGATGTGGCCCAGACACACCTATAGTGGACTTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAATTACTTGATGTGGCCCAGACACACCTATAGTGGACTTCCTTC  350

seq1  TCCTGATGCCATTTCAATAAGTGCAACTATCCTCACCTCTGAAACACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCCATTTCAATAAGTGCAACTATCCTCACCTCTGAAACACAGC  400

seq1  ACACAGATGGCAAAGAAGAGCTTGTGTTCCAAAGAGTTCCTCCATCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATGGCAAAGAAGAGCTTGTGTTCCAAAGAGTTCCTCCATCCAAC  450

seq1  CTAGACTTTCCCAATTGCTGAAAGAATACTAAGACCAAAGTTGCTAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTTCCCAATTGCTGAAAGAATACTAAGACCAAAGTTGCTAAATA  500

seq1  TAAACAAAGTACTCAGCACTGTTTTATTTTATTATTATTATTATTATTAT  550
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  TAAACAAAGTACTCAGCACTGTTTTATT---TTATTATTATTATTATTAT  547

seq1  TATTATTATTATTATTATTATTATTATATATTTTCTTTATTTGCATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTATTATATATTTTCTTTATTTGCATTTCA  597

seq1  AATGTTACCCCCTTTCCTGGTTTCCCCTCAGAAAATCCCTATCCCCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACCCCCTTTCCTGGTTTCCCCTCAGAAAATCCCTATCCCCTCCC  647

seq1  CCATACCCCTGCTCACCAACCCACCCACTCCACCTCCTGGCCCTGGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCCTGCTCACCAACCCACCCACTCCACCTCCTGGCCCTGGCATT  697

seq1  CCCCTACACTGGGGCATGGAGCCTACACAGGACCAGGGCTCTCTCCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACACTGGGGCATGGAGCCTACACAGGACCAGGGCTCTCTCCTCCC  747

seq1  ATTGATGACTGACTAGGCCATCCTCTGCTACATATGCAGCTGGAGTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGACTGACTAGGCCATCCTCTGCTACATATGCAGCTGGAGTCATG  797

seq1  AGTCCCACCATGTGTACTCTATGGTTGGTGGTTTAGTCCC-TGGGAGCTC  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTCCCACCATGTGTACTCTATGGTTGGTGGTTTAGTCCCTTGGGAGCTC  847

seq1  TGGGGGGTACTGGATAGTTCATA-TTGTTGTTCCTCCAATGGGCTGCAAA  898
      |||||||||||||||||| |||| |||||||| |||||||||||||||||
seq2  TGGGGGGTACTGGATAGTCCATATTTGTTGTTTCTCCAATGGGCTGCAAA  897

seq1  CCCTTT-CAGCTCCTTGAGTCCTTTTCCTAACTCCTTCACTGGGGACCCT  947
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCTTTCCAGCTCCTTGAGT-CTTTTCCTAACTCCTTCACTGGGGACCCT  946

seq1  GTGC-TCTGTCCAGTGGATGTCAGCGTTG-TTTTCTAGTTTGCAAGTCAA  995
      |||| ||||||||||| |||| ||||||| ||||||||||||||||||||
seq2  GTGCTTCTGTCCAGTGAATGT-AGCGTTGTTTTTCTAGTTTGCAAGTCAA  995

seq1  TATACAGATTAGGGCTG-AGATCACTTTTCTTGGGACTTACATTTTTTTT  1044
      ||||| ||||||||||| ||||||||||   |||||||||||||||||||
seq2  TATACGGATTAGGGCTGAAGATCACTTT--CTGGGACTTACATTTTTTTT  1043

seq1  TCACGTGTACATGTTATTTAAGATTTT  1071
      |||||   |||||||| |  |||||||
seq2  TCACGGTGACATGTTAAT--AGATTTT  1068