BAC Information

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BAC

Clone NameB6Ng01-161M10
Chromosome5 (Build37)
Map Location 19,431,522 - 19,663,208
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161M10.bB6Ng01-161M10.g
ACCDH954795DH954796
length990873
definitionDH954795|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M10, 5' end.DH954796|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,431,522 - 19,432,521)(19,662,340 - 19,663,208)
sequence
gaattcatgttgggtacttgccattaatctcacttcaagtgtatagatcc
ttgttctgctctctgctgtgaagtctaccagtgagttttgttgtttagat
attgaatattttatttcttagatttccttttctaaagtgtctattcctct
tctatgatttatttgtttaatgactattattttttttcctttaagtcttt
gaaaataattggaatagatgctttgctaaagtagctctcagccaactccc
tcatcttggtcattttgtggccatccttattgatttctttattgctgagt
atgggtgacatttccttgttatctagttaatctaacgctgagattttgct
gttctgtattcagactactaaaattacttatctttattttagcagtggtt
aatcctcttgaagttgcaaaatgtcttacatcttcaaaaaatagtatgtt
tgaacacttacctacaattggcatgaacctgatatattttgagtctttta
aaaatattattttaaacaacatacctggactcatgcagatatttgggtag
aatttgaaaacttcctcctttgttcttttatttccatatgagaataaatg
cagaaatctggcagctgccctgagttacagatgaggcttgatgctgttag
acattccattcagctaccagtagaaggttgtgctgttcttttgttaatat
gaaaatacctttattagattcaactattttatgactatgatggattaaga
ttaaaaaggccattcttctatcatgtccccaaattaattaaaataaacag
aacattatcctacccacaagattatctagtttccactttggctattatct
gactgcttcagctcttttgtttttagatatgaaaattagattcttattaa
agatctctacaggcattacccatggatcctattaagaacttcttcccagc
attaccaatgattcctatttaagaaccttctcccggcatt
gaattctaattgttattactttaagatttcctggacacctgtaacctcat
tccttgaggaattcctcaggctggttaatgttttgcttctgtgggagctc
agcatcctattacactctcatttgaatactcctggctaagctgggagttc
gtagactgcccaatggtggatcatctgttaagtgactaacaaacctattc
cttttctggaaagcatctaatcatgaaaaaccaattccttttgttgacaa
aaatctttattccttgttattccccatcatgtgtactggtaccatactga
ttttgtcttctagaacaaaatggctgctctatgtgatggatgtgcatcaa
gactgtggtcatgtcttcttgtctaaagatagtcctgaagaacactgggt
gctgtatgagcaacactgtctttccagcatggaaaaatggggctgttgtt
attttcttctttgatcttatatcactaattactaagttacattcgaatgt
ctttcttttattagacaaaaacaaagaaaatctctcccgatgaactcgta
agaagaaactgctaagaaacatcagatagatttcaaaaatatattttgtt
tgtttgttgtgctttttaattactaaatgatttttttaaaaaaatctcaa
ccaaagtcaagataacaacttctttacatactgtttgtaggtagactgct
ctaatgttgaagcacttttattaaaatcatggtcctatcaaagtgggtag
tgccttaaagggggctcagttttggatagacactatcagtcacaaaaccc
catcagctctgagacagaaaatgaagctggaggagacctgcctccgggaa
ctgtgtccagtgctgctgctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19431522_19432521
seq2: B6Ng01-161M10.b_33_1022

seq1  GAATTCATGTTGGGTACTTGCCATTAATCTCACTTCAAGTGTATAGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTGGGTACTTGCCATTAATCTCACTTCAAGTGTATAGATCC  50

seq1  TTGTTCTGCTCTCTGCTGTGAAGTCTACCAGTGAGTTTTGTTGTTTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGCTCTCTGCTGTGAAGTCTACCAGTGAGTTTTGTTGTTTAGAT  100

seq1  ATTGAATATTTTATTTCTTAGATTTCCTTTTCTAAAGTGTCTATTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATATTTTATTTCTTAGATTTCCTTTTCTAAAGTGTCTATTCCTCT  150

seq1  TCTATGATTTATTTGTTTAATGACTATTATTTTTTTTCCTTTAAGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGATTTATTTGTTTAATGACTATTATTTTTTTTCCTTTAAGTCTTT  200

seq1  GAAAATAATTGGAATAGATGCTTTGCTAAAGTAGCTCTCAGCCAACTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATTGGAATAGATGCTTTGCTAAAGTAGCTCTCAGCCAACTCCC  250

seq1  TCATCTTGGTCATTTTGTGGCCATCCTTATTGATTTCTTTATTGCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGGTCATTTTGTGGCCATCCTTATTGATTTCTTTATTGCTGAGT  300

seq1  ATGGGTGACATTTCCTTGTTATCTAGTTAATCTAACGCTGAGATTTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGACATTTCCTTGTTATCTAGTTAATCTAACGCTGAGATTTTGCT  350

seq1  GTTCTGTATTCAGACTACTAAAATTACTTATCTTTATTTTAGCAGTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTATTCAGACTACTAAAATTACTTATCTTTATTTTAGCAGTGGTT  400

seq1  AATCCTCTTGAAGTTGCAAAATGTCTTACATCTTCAAAAAATAGTATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTTGAAGTTGCAAAATGTCTTACATCTTCAAAAAATAGTATGTT  450

seq1  TGAACACTTACCTACAATTGGCATGAACCTGATATATTTTGAGTCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTTACCTACAATTGGCATGAACCTGATATATTTTGAGTCTTTTA  500

seq1  AAAATATTATTTTAAACAACATACCTGGACTCATGCAGATATTTGGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATTTTAAACAACATACCTGGACTCATGCAGATATTTGGGTAG  550

seq1  AATTTGAAAACTTCCTCCTTTGTTCTTTTATTTCCATATGAGAATAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAAACTTCCTCCTTTGTTCTTTTATTTCCATATGAGAATAAATG  600

seq1  CAGAAATCTGGCAGCTGCCCTGAGTTACAGATGAGGCTTGATGCTGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTGGCAGCTGCCCTGAGTTACAGATGAGGCTTGATGCTGTTAG  650

seq1  ACATTCCATTCAGCTACCAGTAGAAGGTTGTGCTGTTCTTTTGTTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACATTCCATTCAGCTACCAGTAGAAGGTTGTGCTGTTCTTTTGTT-AATA  699

seq1  TGAAAATACCTTTATTAGATTCAACTATTTTATGACTATGATGGATTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATACCTTTATTAGATTCAACTATTTTATGACTATGATGGATTAAG  749

seq1  ATTAAAAAGGCCATTCTTCTATCATGTCCCCAAATAAATAAAAATAAACA  800
      ||||||||||||||||||||||||||||||||||| ||| ||||||||| 
seq2  ATTAAAAAGGCCATTCTTCTATCATGTCCCCAAATTAATTAAAATAAAC-  798

seq1  AGAACATTATCCTACCCACAAGAATAATCTAGTTTCCACTTTGGCTATTA  850
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  AGAACATTATCCTACCCACAAG-ATTATCTAGTTTCCACTTTGGCTATTA  847

seq1  TCTGACTGCTGCAGCTCTTTTTGTCTTTAGATATGAAAAATTAGGATTCT  900
      |||||||||| |||||| |||||| |||||||||| ||||||| ||||||
seq2  TCTGACTGCTTCAGCTC-TTTTGTTTTTAGATATG-AAAATTA-GATTCT  894

seq1  TATTAAAGAACCTCTACCAGGCATTACCAATGGATCCCTATTAAAGAACT  950
      |||||||| | ||||| ||||||||||| |||||| |||||| |||||||
seq2  TATTAAAG-ATCTCTA-CAGGCATTACCCATGGAT-CCTATT-AAGAACT  940

seq1  TCTCCCAGGCATTACCAATGGATCCCTATTAAAGAACC-TCTCCCGGCAT  999
      ||| ||  ||||||||||| ||| |||||| ||||||| |||||||||||
seq2  TCTTCCCAGCATTACCAAT-GATTCCTATTTAAGAACCTTCTCCCGGCAT  989

seq1  T  1000
      |
seq2  T  990

seq1: chr5_19662340_19663208
seq2: B6Ng01-161M10.g_59_931 (reverse)

seq1  ATCAGCAGCAGCACTGGACACAGATCCCCGAGGCAGCTCTCCTCCAGCTT  50
      ||||||||||||||||||||||| |||| ||||||| |||||||||||||
seq2  ATCAGCAGCAGCACTGGACACAGTTCCCGGAGGCAGGTCTCCTCCAGCTT  50

seq1  CATTTCCTGTCTCAGAGCTGATGGGGTTTTGCTGACTGATAGTGTCTAT-  99
      ||||| ||||||||||||||||||||||||| ||||||||||||||||| 
seq2  CATTTTCTGTCTCAGAGCTGATGGGGTTTTG-TGACTGATAGTGTCTATC  99

seq1  CAAAACTGAG-CCCCTTAAAGACACTACCCACTTTGATAGGA-CATGATT  147
      |||||||||| |||||| ||| |||||||||||||||||||| |||||||
seq2  CAAAACTGAGCCCCCTTTAAGGCACTACCCACTTTGATAGGACCATGATT  149

seq1  CTAATAAAATGTGC-TCAACATTAGAGCAGTCTACCTACAAACAGTATGT  196
       |||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  TTAATAAAA-GTGCTTCAACATTAGAGCAGTCTACCTACAAACAGTATGT  198

seq1  AAAGAAGTTGTTATCTTGAC-TTGGTTGAGATTTTTTT-AAAAAATCATT  244
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  AAAGAAGTTGTTATCTTGACTTTGGTTGAGATTTTTTTAAAAAAATCATT  248

seq1  TAGTAATTAAAAAGCACAACAAACAAACAAAATATATTTTTGAAATCTAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTAAAAAGCACAACAAACAAACAAAATATATTTTTGAAATCTAT  298

seq1  CTGATGTTTCTTAGCAGTTTCTTCTTACGAGTTCATCGGGAGAGATTTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTTCTTAGCAGTTTCTTCTTACGAGTTCATCGGGAGAGATTTTC  348

seq1  TTTGTTTTTGTCTAATAAAAGAAAGACATTCGAATGTAACTTAGTAATTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTCTAATAAAAGAAAGACATTCGAATGTAACTTAGTAATTA  398

seq1  GTGATATAAGATCAAAGAAGAAAATAACAACAGCCCCATTTTTCCATGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATAAGATCAAAGAAGAAAATAACAACAGCCCCATTTTTCCATGCT  448

seq1  GGAAAGACAGTGTTGCTCATACAGCACCCAGTGTTCTTCAGGACTATCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACAGTGTTGCTCATACAGCACCCAGTGTTCTTCAGGACTATCTT  498

seq1  TAGACAAGAAGACATGACCACAGTCTTGATGCACATCCATCACATAGAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGAAGACATGACCACAGTCTTGATGCACATCCATCACATAGAGC  548

seq1  AGCCATTTTGTTCTAGAAGACAAAATCAGTATGGTACCAGTACACATGAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTTGTTCTAGAAGACAAAATCAGTATGGTACCAGTACACATGAT  598

seq1  GGGGAATAACAAGGAATAAAGATTTTTGTCAACAAAAGGAATTGGTTTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATAACAAGGAATAAAGATTTTTGTCAACAAAAGGAATTGGTTTTT  648

seq1  CATGATTAGATGCTTTCCAGAAAAGGAATAGGTTTGTTAGTCACTTAACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTAGATGCTTTCCAGAAAAGGAATAGGTTTGTTAGTCACTTAACA  698

seq1  GATGATCCACCATTGGGCAGTCTACGAACTCCCAGCTTAGCCAGGAGTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCCACCATTGGGCAGTCTACGAACTCCCAGCTTAGCCAGGAGTAT  748

seq1  TCAAATGAGAGTGTAATAGGATGCTGAGCTCCCACAGAAGCAAAACATTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGAGAGTGTAATAGGATGCTGAGCTCCCACAGAAGCAAAACATTA  798

seq1  ACCAGCCTGAGGAATTCCTCAAGGAATGAGGTTACAGGTGTCCAGGAAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTGAGGAATTCCTCAAGGAATGAGGTTACAGGTGTCCAGGAAAT  848

seq1  CTTAAAGTAATAACACTTAGAATTC  869
      ||||||||||||||| |||||||||
seq2  CTTAAAGTAATAACAATTAGAATTC  873