BAC Information

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BAC

Clone NameB6Ng01-161M21
Chromosome5 (Build37)
Map Location 90,482,218 - 90,654,751
singlet/doubletdoublet
Overlap geneEG665733, Cox18
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3
Downstream geneAnkrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161M21.bB6Ng01-161M21.g
ACCDH954817DH954818
length1,0161,007
definitionDH954817|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M21, 5' end.DH954818|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,482,218 - 90,483,253)(90,653,739 - 90,654,751)
sequence
gaattcacatgtgtgcatttgaatcacccagctcatctcttgtcacacac
taagatagctcataggaaaactctaagatttataaatatgcacattcgcc
acaatgttctcagtgccactgagaacaacctgaaaaattgataatggaat
catcgattgaaatatagtacaatacactgtatagtggtttgcaggcatca
aaaggtttagattgaatttttttttttaaaaaactgctggagtatttcta
tcaggtattattaaactgaggtatgatccctttcaagaccaggaaatgtt
ctctatatgcacagaactctctctgagtttggtcttggaagaagataaag
gaaaatttacagcagtctactaacactgcttatttaggcagagggcaaaa
gcaaccgtgagataaaccatctccactgactagctgtataaccactgttt
ctcaaacacagaacaattttgagatccctgaatgctcaaacatcacccct
ttctcctaaagggtccttatttactctctgcgggcctgttcatggcagac
tgtcgagcaattttttgcatcgcttcagcccttctgaaagaaggaggaaa
ggaagaatggcgaggagagaagcagaagtgtcctgactgaggcgtgcgat
tctgtgtggtggtcggcaagctcactttctaccgagcatttctgaaacca
aacgatgggcacagcatcaccatcccatgaacagtttgcaaagctacgct
gacgacccggctttctgcatcagcatagtcagtccaggcctcaaacagtg
ctaagatgcaggtcttaaggccaccacttgcatgctctcttttactgccg
accgtgtagcctcattgccatccagggaccactaccctattctcaacaac
tgaactgctttcattgctcagagttgccctgctgtcctgtctgatttcaa
gcaagcctgtgtcatgttgaaactctccctgctcccttcacaccctacct
attctgtctctcacac
gaattcttaacctccctttgcctccctcaggcactagtgcatgaggtttt
ctcaaaagtacacttcagcctgaattacagtgagtccttgaatagcctgt
gctacagagagaacatattgtatatctcaagggcctatgggggaggcata
aagctatgcctgataacctcaatccaatccttagaattctcaagtggtct
ctgataccacatgagtttcctcctcagggttagtgttagatttacagaca
cgtcatatgcacattattaagaagacaaaaagttaaatatgctcatatat
gcaacatcacaaaataagtattaagaagtttagttcacataacaatatat
gggtttagtttttaaatttatttccattactttgacatgaatgcaggtgt
gcagttttatcagaagaggttgtcagttacctgtagctgtagaaaaaaat
tgttaaagattttaataactgcttgaaatttttggtttagggtttgtgaa
caatagatctacaaataacaggcttatttattacacataataaatttacc
tactttcccagtgttgagaattaattctaggttctcatgtatggtaagtt
gggacttgggggagttgtttttaagtaacttctctggcttaaggccatct
tggaagggcctactggatattaacagttttatggaaatacggtggtttct
taaactagcaagagataagtgagctgtttttaaaagggattatgctatgg
gaactaaaggcaggtttccccagtttcagaaaatacgctatctgacagct
tttggtaggtgttcaataaagtagaggacagtgtcaacagtttggcttta
caaacatgggagaggtttctaaaactcaatcactttggcctaacctagga
gtgggcacttcgttgttccatttattttctgttgacagaacactgatgtg
aaaacatacagttgttataagccttgtgcattccatttaacgttgagcaa
atttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90482218_90483253
seq2: B6Ng01-161M21.b_48_1063

seq1  GAATTCACATGTGTGCATTTGAATCACCCAGCTCATCTCTTGTCACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTGTGCATTTGAATCACCCAGCTCATCTCTTGTCACACAC  50

seq1  TAAGATAGCTCATAGGAAAACTCTAAGATTTATAAATATGCACATTCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGCTCATAGGAAAACTCTAAGATTTATAAATATGCACATTCGCC  100

seq1  ACAATGTTCTCAGTGCCACTGAGAACAACCTGAAAAATTGATAATGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCTCAGTGCCACTGAGAACAACCTGAAAAATTGATAATGGAAT  150

seq1  CATCGATTGAAATATAGTACAATACACTGTATAGTGGTTTGCAGGCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGATTGAAATATAGTACAATACACTGTATAGTGGTTTGCAGGCATCA  200

seq1  AAAGGTTTAGATTGAATTTTTTTTTTTAAAAAACTGCTGGAGTATTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTAGATTGAATTTTTTTTTTTAAAAAACTGCTGGAGTATTTCTA  250

seq1  TCAGGTATTATTAAACTGAGGTATGATCCCTTTCAAGACCAGGAAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATTATTAAACTGAGGTATGATCCCTTTCAAGACCAGGAAATGTT  300

seq1  CTCTATATGCACAGAACTCTCTCTGAGTTTGGTCTTGGAAGAAGATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATGCACAGAACTCTCTCTGAGTTTGGTCTTGGAAGAAGATAAAG  350

seq1  GAAAATTTACAGCAGTCTACTAACACTGCTTATTTAGGCAGAGGGCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTACAGCAGTCTACTAACACTGCTTATTTAGGCAGAGGGCAAAA  400

seq1  GCAACCGTGAGATAAACCATCTCCACTGACTAGCTGTATAACCACTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCGTGAGATAAACCATCTCCACTGACTAGCTGTATAACCACTGTTT  450

seq1  CTCAAACACAGAACAATTTTGAGATCCCTGAATGCTCAAACATCACCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACACAGAACAATTTTGAGATCCCTGAATGCTCAAACATCACCCCT  500

seq1  TTCTCCTAAAGGGTCCTTATTTACTCTCTGCGGGCCTGTTCATGGCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAAAGGGTCCTTATTTACTCTCTGCGGGCCTGTTCATGGCAGAC  550

seq1  TGTCGAGCAATTTTTTGCATCGCTTCAGCCCTTCTGAAAGAAGGAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGAGCAATTTTTTGCATCGCTTCAGCCCTTCTGAAAGAAGGAGGAAA  600

seq1  GGAAGAATGGCGAGGAGAGAAGCAGAAGTGTCCTGACTGAGGCGTGCGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATGGCGAGGAGAGAAGCAGAAGTGTCCTGACTGAGGCGTGCGAT  650

seq1  TCTGTGTGGTGGTCGGCAAGCTCACTTTCTACCGAGCATTTCTGAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGTGGTCGGCAAGCTCACTTTCTACCGAGCATTTCTGAAACCA  700

seq1  AACGATGGGCACAGCATCACCATCCCATGAACAGTTTGCAAAGCTACGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATGGGCACAGCATCACCATCCCATGAACAGTTTGCAAAGCTACGCT  750

seq1  GACGACCCGGCTTTCTGCATCAGCATAGTCAGTCCAGGCCTCAAACAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACCCGGCTTTCTGCATCAGCATAGTCAGTCCAGGCCTCAAACAGTG  800

seq1  CTAAGATGCAGGTCTTAAGGCCACCACTTGCATGCTCTCTTTTACTGCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGCAGGTCTTAAGGCCACCACTTGCATGCTCTCTTTTACTGCCG  850

seq1  ACCGTGTAGCCTCATTGCCATCCAGGGACCACTACCCTATTCTCCAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCGTGTAGCCTCATTGCCATCCAGGGACCACTACCCTATTCT-CAACAA  899

seq1  CTGAACTGCTTTTCATTGCTCAGAGGTTGCCCTGCTTGGTCCTTGTTCTG  950
      ||||||||| |||||||||||||| |||||||||||  |||||   ||||
seq2  CTGAACTGC-TTTCATTGCTCAGA-GTTGCCCTGCT--GTCCT--GTCTG  943

seq1  GATTTTCAGGCAGGCCTGTGTTCCATGTTTGAAACTCTCCCTGCCTCCCT  1000
         ||||| ||| ||||||||  |||| ||||||||||||||| ||||||
seq2  --ATTTCAAGCAAGCCTGTGT--CATG-TTGAAACTCTCCCTG-CTCCCT  987

seq1  TCCACACCCCTAACCCCTTATTCTGGTCTCTCACAC  1036
      | |||| |||||    | |||||| |||||||||||
seq2  T-CACA-CCCTA----CCTATTCT-GTCTCTCACAC  1016

seq1: chr5_90653739_90654751
seq2: B6Ng01-161M21.g_69_1075 (reverse)

seq1  CACAATTTTGCTTCAACGGTTAAATGGAATGCACAGGGCTTTTAACAACT  50
      ||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||
seq2  CACAAATTTGC-TCAAC-GTTAAATGGAATGCACAAGGCTTATAACAACT  48

seq1  GTGTGTTTTTCACATTCGTGTTCCTGTCAACAGAAAATAAATGGAACAAC  100
      || || |||||||||  ||||| |||||||||||||||||||||||||||
seq2  GTATG-TTTTCACATCAGTGTT-CTGTCAACAGAAAATAAATGGAACAAC  96

seq1  GAAGTGCCCACTCCTAGGGTAGGCCAAAGTGAATTGAGTTTTTAGAAACC  150
      |||||||||||||||||| |||||||||||| |||||| |||||||||||
seq2  GAAGTGCCCACTCCTAGGTTAGGCCAAAGTG-ATTGAG-TTTTAGAAACC  144

seq1  TCTCCCATGTTTGGTAAAGCCAAACTGTGGACACTGTCCTCTACTTTATT  200
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  TCTCCCATGTTT-GTAAAGCCAAACTGTTGACACTGTCCTCTACTTTATT  193

seq1  GAACACCTACC-AAAGCTGTCAGATAGCGTATTTTCTGAAACTTGGGTAA  249
      ||||||||||| ||||||||||||||||||||||||||||||| ||| ||
seq2  GAACACCTACCAAAAGCTGTCAGATAGCGTATTTTCTGAAACTGGGGAAA  243

seq1  CCTGCCTTTAGTTCCCATAGCATAATCCCTTTTAAAAACAGCTCACTTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTTAGTTCCCATAGCATAATCCCTTTTAAAAACAGCTCACTTAT  293

seq1  CTCTTGCTAGTTTAAGAAACCACCGTATTTCCATAAAACTGTTAATATCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTAGTTTAAGAAACCACCGTATTTCCATAAAACTGTTAATATCC  343

seq1  AGTAGGCCCTTCCAAGATGGCCTTAAGCCAGAGAAGTTACTTAAAAACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCCCTTCCAAGATGGCCTTAAGCCAGAGAAGTTACTTAAAAACAA  393

seq1  CTCCCCCAAGTCCCAACTTACCATACATGAGAACCTAGAATTAATTCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAAGTCCCAACTTACCATACATGAGAACCTAGAATTAATTCTCA  443

seq1  ACACTGGGAAAGTAGGTAAATTTATTATGTGTAATAAATAAGCCTGTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGAAAGTAGGTAAATTTATTATGTGTAATAAATAAGCCTGTTAT  493

seq1  TTGTAGATCTATTGTTCACAAACCCTAAACCAAAAATTTCAAGCAGTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATCTATTGTTCACAAACCCTAAACCAAAAATTTCAAGCAGTTAT  543

seq1  TAAAATCTTTAACAATTTTTTTCTACAGCTACAGGTAACTGACAACCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTTTAACAATTTTTTTCTACAGCTACAGGTAACTGACAACCTCT  593

seq1  TCTGATAAAACTGCACACCTGCATTCATGTCAAAGTAATGGAAATAAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAAACTGCACACCTGCATTCATGTCAAAGTAATGGAAATAAATT  643

seq1  TAAAAACTAAACCCATATATTGTTATGTGAACTAAACTTCTTAATACTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTAAACCCATATATTGTTATGTGAACTAAACTTCTTAATACTTA  693

seq1  TTTTGTGATGTTGCATATATGAGCATATTTAACTTTTTGTCTTCTTAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGATGTTGCATATATGAGCATATTTAACTTTTTGTCTTCTTAATA  743

seq1  ATGTGCATATGACGTGTCTGTAAATCTAACACTAACCCTGAGGAGGAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATATGACGTGTCTGTAAATCTAACACTAACCCTGAGGAGGAAAC  793

seq1  TCATGTGGTATCAGAGACCACTTGAGAATTCTAAGGATTGGATTGAGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGTATCAGAGACCACTTGAGAATTCTAAGGATTGGATTGAGGTT  843

seq1  ATCAGGCATAGCTTTATGCCTCCCCCATAGGCCCTTGAGATATACAATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCATAGCTTTATGCCTCCCCCATAGGCCCTTGAGATATACAATAT  893

seq1  GTTCTCTCTGTAGCACAGGCTATTCAAGGACTCACTGTAATTCAGGCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCTGTAGCACAGGCTATTCAAGGACTCACTGTAATTCAGGCTGA  943

seq1  AGTGTACTTTTGAGAAAACCTCATGCACTAGTGCCTGAGGGAGGCAAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTTTGAGAAAACCTCATGCACTAGTGCCTGAGGGAGGCAAAGG  993

seq1  GAGGTTAAGAATTC  1013
      ||||||||||||||
seq2  GAGGTTAAGAATTC  1007