BAC Information

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BAC

Clone NameB6Ng01-161N17
Chromosome5 (Build37)
Map Location 4,650,300 - 4,808,251
singlet/doubletdoublet
Overlap geneFzd1, LOC667678, Pftk1
Upstream gene4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161N17.bB6Ng01-161N17.g
ACCDH954855DH954856
length7621,075
definitionDH954855|Mus musculus domesticus DNA, BAC clone: B6Ng01-161N17, 5' end.DH954856|Mus musculus domesticus DNA, BAC clone: B6Ng01-161N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,650,300 - 4,651,054)(4,807,160 - 4,808,251)
sequence
gaattccacagccctcttctgtgtaaccagtcatcacagttggcaggcca
gaactggctttcacttttgaaatttttcattattttctctcaaaaggaca
tgtgtgtcaactcttttaaaatgatatacaaccgaaatgaattcttgggc
ttgccaccgctctttctgattagctgagcacacattcaaatcactgctgt
ggttattaaatccatgtgctgcattccatgcttgggagaggacagacaga
gagagaaaagaagagagactatgaagggcaatcagggaaaactggccttg
gaaactgacttgaaaaatacttatcccctccccaatacaatcacacctgt
taacatttgaggggcttttcttgacactctgagtatcataggatatattt
gatgacaagaagttttaggcatgctgtaccaaactactgagtgacttaaa
ataacacagttttttcttagagttctagagatggggagatccaaatatga
aagcccaccttacactggacgagggtcttcttgctgagttcccacggggt
gggagagatggaagggatggatttgctgtggaagccccatgcgtatgaca
ataatctctccttggtttaatcacctcctaaaggggactgcatctccaca
cctatcacattgttgcatacatcttagcataattaaatttgggtatccat
ttgactacaaaaatattaaaattaatttttgcaaatatgataagcacaag
gactacctgggg
gaattcaaatcaggaatctgagcagcagtcaccacatctgtgttgatagg
aactttatttacatcaaccacaggacagtactcaagtacatgttaactga
cagacggataaagaccatatcatgtaggcatagtgagacattacctgggc
gttttagaaaataatgaagtactgacatatactgcagcacggtgaacctc
aaaaatgttatgctagtcgagagctgcccagggcaacaggtcacacattg
tatgatttcctcttagataaactattcaggataggtaactacacagagac
agaaagactgttggtgttagccagggggtagggcaagggaccatgagaat
gactgctataagtggcattgagacgcctttgaaagtgatgatacattttg
aaattacatagggaggatggctgtacagaattgtgaatgaactaagaacc
accaaattatgcactctgaaatgcttggttatttgttatatgactttcac
ctccataaactgaagaggagcttaaaattctgaaaattcatcagaggaga
ggggagggatgctgttgccctaaggtgccttaagtgtaagaatgggacat
ttgcactcttggtttagacactgaatgtcctcggtgctacagcccatggg
gacagcgtcagggcaagtgtatgtgaagtctctgaaatctcaaatctgtg
tccagcaggacgacaagatatttttgtagctgatgacagggaggcctggc
taggcggtgactaggaccaaggtcctaatcctagttgatgaataggttct
ggtatggagtgaaacagatgcatctactccttcaactacgggacctgaac
ttgggagttccaagttaacttggaacagtgctccaagttaagcatccctt
tcctacccagaggtcaagcaaagatgaataagagcttaaaaactgtatga
gattctcatctcacttactttacctacattggtctcatatcagctgatat
cttatgacaagatcttgcaaagccatgcagttcagtcacgctgaaagatt
tcacgctgatatctaatatactgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_4650300_4651054
seq2: B6Ng01-161N17.b_45_805

seq1  GAATTCCACAGCCCTCTTCTGTGTAACCAGTCATCACAGTTGGCAGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCCCTCTTCTGTGTAACCAGTCATCACAGTTGGCAGGCCA  50

seq1  GAACTGGCTTTCACTTTTGAAATTTTTCATTATTTTCTCTCAAAAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCTTTCACTTTTGAAATTTTTCATTATTTTCTCTCAAAAGGACA  100

seq1  TGTGTGTCAACTCTTTTAAAATGATATACAACCGAAATGAATTCTTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCAACTCTTTTAAAATGATATACAACCGAAATGAATTCTTGGGC  150

seq1  TTGCCACCGCTCTTTCTGATTAGCTGAGCACACATTCAAATCACTGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCGCTCTTTCTGATTAGCTGAGCACACATTCAAATCACTGCTGT  200

seq1  GGTTATTAAATCCATGTGCTGCATTCCATGCTTGGGAGAGGACAGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTAAATCCATGTGCTGCATTCCATGCTTGGGAGAGGACAGACAGA  250

seq1  GAGAGAAAAGAAGAGAGACTATGAAGGGCAATCAGGGAAAACTGGCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAGAAGAGAGACTATGAAGGGCAATCAGGGAAAACTGGCCTTG  300

seq1  GAAACTGACTTGAAAAATACTTATCCCCTCCCCAATACAATCACACCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGACTTGAAAAATACTTATCCCCTCCCCAATACAATCACACCTGT  350

seq1  TAACATTTGAGGGGCTTTTCTTGACACTCTGAGTATCATAGGATATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGAGGGGCTTTTCTTGACACTCTGAGTATCATAGGATATATTT  400

seq1  GATGACAAGAAGTTTTAGGCATGCTGTACCAAACTACTGAGTGACTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAGAAGTTTTAGGCATGCTGTACCAAACTACTGAGTGACTTAAA  450

seq1  ATAACACAGTTTTTTCTTAGAGTTCTAGAGATGGGGAGATCCAAATATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAGTTTTTTCTTAGAGTTCTAGAGATGGGGAGATCCAAATATGA  500

seq1  AAGCCCACCTTACACTGGACGAGGGTCTTCTTGCTGAGTTCCCACGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACCTTACACTGGACGAGGGTCTTCTTGCTGAGTTCCCACGGGGT  550

seq1  GGGAGAGATGGAAGGGATGGATTTGCTGTGGAAG-CCCATGCGTATGACA  599
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGAGAGATGGAAGGGATGGATTTGCTGTGGAAGCCCCATGCGTATGACA  600

seq1  ATAATCTCTCC-TGGTTTAATCACCTCCTAAA-GGGACTGCATCTCCACA  647
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  ATAATCTCTCCTTGGTTTAATCACCTCCTAAAGGGGACTGCATCTCCACA  650

seq1  -CTATCACATTGTTGCATACATCTTAGCAT-ATTCAATTTGGGGATCCAT  695
       ||||||||||||||||||||||||||||| ||| |||||||| ||||||
seq2  CCTATCACATTGTTGCATACATCTTAGCATAATTAAATTTGGGTATCCAT  700

seq1  TTGACTACAAGAGTATT-AGATTAATTTTTGCAAATATGAGAAGCACTTA  744
      |||||||||| | |||| | |||||||||||||||||||| ||||||  |
seq2  TTGACTACAAAAATATTAAAATTAATTTTTGCAAATATGATAAGCAC-AA  749

seq1  GGACTA-CTGGG  755
      |||||| |||||
seq2  GGACTACCTGGG  761

seq1: chr5_4807160_4808251
seq2: B6Ng01-161N17.g_75_1142 (reverse)

seq1  GTCAGTTATATTAGATTTATCAGCGTGAAATCTGGTCAGCGTGACCTGAA  50
      ||||| |||||||||  ||||||||||||||||  ||||||||| |||||
seq2  GTCAG-TATATTAGA--TATCAGCGTGAAATCT-TTCAGCGTGA-CTGAA  45

seq1  CTGGCATGGCCTTTGCAAAGATCCTTGGTTCCTAAGATATCAGCTTGATA  100
      || |||||| |||||| ||||| ||||  || |||||||||||| |||| 
seq2  CT-GCATGG-CTTTGC-AAGAT-CTTG--TCATAAGATATCAGC-TGAT-  87

seq1  ATGAGAACCCATTGTAGGTAAGAGGTTAAGTGAGAATGAAGAATCTTCAT  150
      ||||||  ||| ||||||||| ||  |||||||| ||| |||||| ||||
seq2  ATGAGA--CCAATGTAGGTAA-AG--TAAGTGAG-ATG-AGAATC-TCAT  129

seq1  ACAGGTTTTTTAAGCTCTTATTCATCTTTGCTTGACCTCTGGGTAGGAAA  200
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAG--TTTTTAAGCTCTTATTCATCTTTGCTTGACCTCTGGGTAGGAAA  177

seq1  GGGAATGCTTAACTTGGAGCACTGTTCCAAGTTAACTTGGAACTCCCAAG  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGG-ATGCTTAACTTGGAGCACTGTTCCAAGTTAACTTGGAACTCCCAAG  226

seq1  TTCAGGTCCCGTAGTTGAAGGAGTAGATGCATCTGTTTCACTCCATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCCCGTAGTTGAAGGAGTAGATGCATCTGTTTCACTCCATACCA  276

seq1  GAACCTATTCATCAACTAGGATTAGGACCTTGGTCCTAGTCACCGCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATTCATCAACTAGGATTAGGACCTTGGTCCTAGTCACCGCCTAG  326

seq1  CCAGGCCTCCCTGTCATCAGCTACAAAAATATCTTGTCGTCCTGCTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTCCCTGTCATCAGCTACAAAAATATCTTGTCGTCCTGCTGGAC  376

seq1  ACAGATTTGAGATTTCAGAGACTTCACATACACTTGCCCTGACGCTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTGAGATTTCAGAGACTTCACATACACTTGCCCTGACGCTGTCC  426

seq1  CCATGGGCTGTAGCACCGAGGACATTCAGTGTCTAAACCAAGAGTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGCTGTAGCACCGAGGACATTCAGTGTCTAAACCAAGAGTGCAAA  476

seq1  TGTCCCATTCTTACACTTAAGGCACCTTAGGGCAACAGCATCCCTCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCATTCTTACACTTAAGGCACCTTAGGGCAACAGCATCCCTCCCCT  526

seq1  CTCCTCTGATGAATTTTCAGAATTTTAAGCTCCTCTTCAGTTTATGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGATGAATTTTCAGAATTTTAAGCTCCTCTTCAGTTTATGGAGG  576

seq1  TGAAAGTCATATAACAAATAACCAAGCATTTCAGAGTGCATAATTTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCATATAACAAATAACCAAGCATTTCAGAGTGCATAATTTGGTG  626

seq1  GTTCTTAGTTCATTCACAATTCTGTACAGCCATCCTCCCTATGTAATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGTTCATTCACAATTCTGTACAGCCATCCTCCCTATGTAATTTC  676

seq1  AAAATGTATCATCACTTTCAAAGGCGTCTCAATGCCACTTATAGCAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATCATCACTTTCAAAGGCGTCTCAATGCCACTTATAGCAGTCA  726

seq1  TTCTCATGGTCCCTTGCCCTACCCCCTGGCTAACACCAACAGTCTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGGTCCCTTGCCCTACCCCCTGGCTAACACCAACAGTCTTTCTG  776

seq1  TCTCTGTGTAGTTACCTATCCTGAATAGTTTATCTAAGAGGAAATCATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAGTTACCTATCCTGAATAGTTTATCTAAGAGGAAATCATAC  826

seq1  AATGTGTGACCTGTTGCCCTGGGCAGCTCTCGACTAGCATAACATTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGACCTGTTGCCCTGGGCAGCTCTCGACTAGCATAACATTTTTG  876

seq1  AGGTTCACCGTGCTGCAGTATATGTCAGTACTTCATTATTTTCTAAAACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCACCGTGCTGCAGTATATGTCAGTACTTCATTATTTTCTAAAACG  926

seq1  CCCAGGTAATGTCTCACTATGCCTACATGATATGGTCTTTATCCGTCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTAATGTCTCACTATGCCTACATGATATGGTCTTTATCCGTCTGT  976

seq1  CAGTTAACATGTACTTGAGTACTGTCCTGTGGTTGATGTAAATAAAGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACATGTACTTGAGTACTGTCCTGTGGTTGATGTAAATAAAGTTC  1026

seq1  CTATCAACACAGATGTGGTGACTGCTGCTCAGATTCCTGATT  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACACAGATGTGGTGACTGCTGCTCAGATTCCTGATT  1068