BAC Information

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BAC

Clone NameB6Ng01-161P23
Chromosome5 (Build37)
Map Location 59,356,623 - 59,357,704
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396
Downstream geneLOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P23.bB6Ng01-161P23.g
ACCDH954955DH954956
length1,1591,056
definitionDH954955|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P23, 5' end.DH954956|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttcttcagagacttgaattttttcatgcttatctttcacttg
cttggttggagttataccaaggaattttatgttatttgtggctattgtga
accatactttttctctaacatctatctcagtctgtttatcacttctgtag
aggagggcaacagttattcaaattaattttatatccacctactttgatga
aagtgcttattagctataggagttctctggaagaatttttgagatcattt
atgtatactatactatctggcaattgtttgacttcttccttccttatgtt
tgtgtcccttgatctccttcagttttgtaattgctcctgctagaacttga
agtactattttgaagagatatagggagagtggacatccttgtcttgtccc
aatttttagtaatgctttaagtttccctccatttaaattgatgctggctg
ttggcttgatgtatattacctttttgtgttaggtatgcaccttgtatcag
tgctcttttaggcatgaataacccaaataccccaattaaaaaatgaggga
gagagctaaacagaattctaacaaaagaatcacaaatggctagaaacaca
taaagaaatgttcaacatccttagtcatcagagatatgcaaatcaaaacg
actctgaggttccaacttatacccatctgaatggctaagatcaataactc
aaaggactgcacatgctggcaaggttttggagcatggggagtactcctcc
actgctggtgagattgcaaactcatactattctggaaatcaatttgtcag
tttaccagaagattaggaatagttctacctcatgacccagctataccact
cctaggcatatacccacatgggtataccatcccacaagctctaccatcca
caagacacttgctcactatgttcacaggagctttatctatatccagaaac
agaaaacacctaaagctctctctcatgagatgacacagaaattttgtata
tcacacaatagaatactcagcataaacaaggaattatgattacgaaaatg
atggatcgaaaatattctggatgggttatgatcccacagactcatggagt
actcagtggaactggattagctcaagtacagatacctgactcgagaggat
attcacaga
gaattctatgcatctctatggtcagatatcagtaagaatattgaacagtc
aattgacttgatatatccaattgaatatgcaacttaattcctttgagtca
aaatacctaaaatgatcagtcagtggatgtatatatctaacattaatttc
agaggcaattttagcatctagaagaaggttgtgtttaatgttcatgaaat
agtttgctacatagcaagtaatgtgtaactgagagaatttattacttagt
tccattattagttttattcacttgcttattgttttaagatgctatggatt
ttagttgattggctgttttataaactgcttcataaatattacctgtcaat
tttctatatttatgatttaaggttaaacatcataaacaatcattaattgg
ttaaattgttgacttttgatagcaatgagaaataatcagtttttttccag
gttactttgaagatagtgcagttttgttctcttctattcatttatctgat
gacatcaccattgcagaaactattctttcttattctactgcttatgttta
attatctgtttaggattattctatgtttggcatgtattcactgaggtatc
taggaactttgtgtccaatacttattgtaactaatggtgactgttttcct
gaacaaataattttactctaccatggttctattactgaagttttaaacat
cacacttcaaatttcaatataaagaacagttataaaataggttctgtaca
gctttcttgaaaactgatttaaaattgtgagaagtaactaagagtagagg
ttttacagtcagtttagagtttaaaagtattttttaatgaattctatata
tttaatatcatgtgctataatttataaaatttacatgattgctttaccac
actataaatgacttagataaaatatttttttgtttttttgtttgtttttt
ttttttggtttgtttttttttcaattttataggtattaactcattacatt
tcaatgctatacaaagtccctatatccaccacctcactccctggccacac
ttcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59356623_59357704
seq2: B6Ng01-161P23.g_70_1125

seq1  GAATTCTATGCATCTCTATGGTCAGATATCAGTAAGAATATTGAACAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCATCTCTATGGTCAGATATCAGTAAGAATATTGAACAGTC  50

seq1  AATTGACTTGATATATCCAATTGAATATGCAACTTAATTCCTTTGAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTTGATATATCCAATTGAATATGCAACTTAATTCCTTTGAGTCA  100

seq1  AAATACCTAAAATGATCAGTCAGTGGATGTATATATCTAACATTAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAAAATGATCAGTCAGTGGATGTATATATCTAACATTAATTTC  150

seq1  AGAGGCAATTTTAGCATCTAGAAGAAGGTTGTGTTTAATGTTCATGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAATTTTAGCATCTAGAAGAAGGTTGTGTTTAATGTTCATGAAAT  200

seq1  AGTTTGCTACATAGCAAGTAATGTGTAACTGAGAGAATTTATTACTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTACATAGCAAGTAATGTGTAACTGAGAGAATTTATTACTTAGT  250

seq1  TCCATTATTAGTTTTATTCACTTGCTTATTGTTTTAAGATGCTATGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATTAGTTTTATTCACTTGCTTATTGTTTTAAGATGCTATGGATT  300

seq1  TTAGTTGATTGGCTGTTTTATAAACTGCTTCATAAATATTACCTGTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGATTGGCTGTTTTATAAACTGCTTCATAAATATTACCTGTCAAT  350

seq1  TTTCTATATTTATGATTTAAGGTTAAACATCATAAACAATCATTAATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATTTATGATTTAAGGTTAAACATCATAAACAATCATTAATTGG  400

seq1  TTAAATTGTTGACTTTTGATAGCAATGAGAAATAATCAGTTTTTTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGTTGACTTTTGATAGCAATGAGAAATAATCAGTTTTTTTCCAG  450

seq1  GTTACTTTGAAGATAGTGCAGTTTTGTTCTCTTCTATTCATTTATCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTGAAGATAGTGCAGTTTTGTTCTCTTCTATTCATTTATCTGAT  500

seq1  GACATCACCATTGCAGAAACTATTCTTTCTTATTCTACTGCTTATGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCACCATTGCAGAAACTATTCTTTCTTATTCTACTGCTTATGTTTA  550

seq1  ATTATCTGTTTAGGATTATTCTATGTTTGGCATGTATTCACTGAGGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGTTTAGGATTATTCTATGTTTGGCATGTATTCACTGAGGTATC  600

seq1  TAGGAACTTTGTGTCCAATACTTATTGTAACTAATGGTGACTGTTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTTTGTGTCCAATACTTATTGTAACTAATGGTGACTGTTTTCCT  650

seq1  GAACAAATAATTTTACTCTACCATGGTTCTATTACTGAAGTTTTAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATAATTTTACTCTACCATGGTTCTATTACTGAAGTTTTAAACAT  700

seq1  CACACTTCAAATTTCAATATAAAGAACAGTTATAAAATAGGTTCTGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCAAATTTCAATATAAAGAACAGTTATAAAATAGGTTCTGTACA  750

seq1  GCTTTCTTGAAAACTGATTTAAAATTGTGAGAAGTAACTAAGAGTAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTGAAAACTGATTTAAAATTGTGAGAAGTAACTAAGAGTAGAGG  800

seq1  TTTTACAGTCAGTTTAGAGTTTAAAAGTATTTTTTAATGAATTCTATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGTCAGTTTAGAGTTTAAAAGTATTTTTTAATGAATTCTATATA  850

seq1  TTTAATATCATGTGCTATAATTTATAAAATTTTACATGATTGCTTTACCA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTAATATCATGTGCTATAATTTATAAAA-TTTACATGATTGCTTTACCA  899

seq1  CACTATAAATGACTTAGATAAAATTATTTTTTTTTGTTTTTTTTGTTTTT  950
      ||||||||||||||||||||||   || |||||||||||||    || ||
seq2  CACTATAAATGACTTAGATAAA---ATATTTTTTTGTTTTT----TTGTT  942

seq1  TGTTTTTTTTTTTTTGTTTTTGTTTTTTTTTTTTCCATTTTTTATTAGGT  1000
      |||||||||||||| ||     || |||||||||| |||||    |||||
seq2  TGTTTTTTTTTTTTGGT-----TTGTTTTTTTTTCAATTTT---ATAGGT  984

seq1  ATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCA  1050
      | |||||||| |||||||| |||||||||||  ||||| ||| |||||||
seq2  A-TTAACTCA-TTACATTT-CAATGCTATAC--AAAGT-CCCTATATCCA  1028

seq1  CCCACCCCCACTCCCCTGCCCACACACTCCCC  1082
      ||   || |||| ||||| ||||||  |||||
seq2  CC--ACCTCACT-CCCTGGCCACAC-TTCCCC  1056