BAC Information

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BAC

Clone NameB6Ng01-162A15
Chromosome5 (Build37)
Map Location 67,244,292 - 67,416,815
singlet/doubletdoublet
Overlap gene3732412D22Rik, LOC624662
Upstream geneLOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876
Downstream genePhox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162A15.bB6Ng01-162A15.g
ACCDH954985DH954986
length1,1881,079
definitionDH954985|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A15, 5' end.DH954986|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,244,292 - 67,245,502)(67,415,744 - 67,416,815)
sequence
gaattcacaatgagttgcagctaagcctctttatgaatgaaggagtgtgg
tttttattattaacagggtgtgagaagaaattgtactcctttgaaaggta
ccttctattatacaacttaaggaaaattctcatgtctattcaaagttaaa
tgaatatctactcaatattgtgtgtgcgttttgtcaataaaccaaatctc
ttctttagaaggtggggagtaatgctcactcttgtaacccccagaatttg
gaaggcagaatcattgaaggtttgaggccaacctaggctacatagggagt
tcctggctagccagagatgtgtgataaaaatcatgtctttaaatcaatca
atcaatcaatcaatcagtcagtcagtcagtcatcagtcagtcagtcagtc
agtcagtcagtcagtcagtcagtcaaccagtcagtcagtcagtcagtcag
tcagtcagtcagtcagtcagtcaaccagtcagtcagtcagtggctagagc
gatggctcagtgcctaagagcccttgtagagttgctcttgcagaggaccg
gggatgggttcccaacatttacatggcggctcacatggtggagaaacatc
tgtagttccagttctaagggatctgataccttcttctgacctttgtaggc
accaggcactcacatggctcacggacataaatgcaggcaacacgttcata
cacataaagtcaatatatttactgagaaaacctcaaaccaaaaaaataac
ataaaaattctctttttatatcattgtgctaagaattgtgaatattcatt
ttaaatgctctttagacctgtagtctgcttgtggttttctttccaaaaaa
tctacaaaagattcatgaaaatatttctgaatactatttgcatacatggt
aatgattgggctggagaccagttcttggcagcctttggctgttcgttgca
attacataataacatagtaacaaaccattaaaggtctgtggggctatgat
atagagtgttacattataaacacgtctaaaatgttgccacaaaagagctg
tggtgctttccctttgatctggtgtctcctatttcagaatttgatgattc
gagcatgccagggatgtagaatctatcagaatacttgggccggtgcagga
atcgatcgagtaactctcatagttgctcccacaaacag
gaattcctcccggttttagtacaacacgtgctggtgtcaaggaacaagct
cattgctaactgtgtgtcacaaacaagcatctctctttaaaaaaaagaaa
aagatctaaaatcagaaaggaagacaagtgccaaacgacattggttgacc
caacatggattttttacataaagaaaaggccagtgacctggtatgttgtt
tacctgactgggagaaaaactgggaccgtcgccaagagttctgaactctc
agcggggcactgccaggcagctctagatcagatggcaaaatagaacaaac
agaaatccatgaaactgggtgagaactgagcagaacacattccacatgtc
aaggtgggtcagttggggtcgactcagggactgaccgtctctgaacctaa
catgtaaaacatcttaccacaatacacacaaaacctgacgacgtggacag
tgggcagtggaactggccagtctgagttcctgaaagcttttacacctgta
ctcagtggggatttttttttttttaagagttaaaggtcaagatgtcatag
taacaggctatgcagaagcaactctaggaaaatcaaaaaggctgtagaga
tgtgtagtgggtttgtggcattcttcacaccacactgatgaaaggaggaa
gtgtgtggcttgcttcctttcaaacatccagacagcacacgtctgctgga
ggtgccaagcgcacagaatttctggcaagcatttgctccctacgcagtga
ggctctgctacttccatccccggagcaatgaacacagcagtctaaagccc
gtgttttacagaaacaacttgggacaaaggaactctgtcagcttttagct
gtatttatgagtggtttccagagtgcttgaatgactgtatttgatgcaca
cgtgtatgcttccggggacccgtggtaacccttttttcaagtttgacagg
cagatcagcagtgacctgtgtgagcatctataaatagatggctttaaaga
aatggggagaacacaacttcctgggggagaagagatttaccaggtgcggg
ttcaaggcttctggttctttggacctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_67244292_67245502
seq2: B6Ng01-162A15.b_43_1230

seq1  GAATTCACAATGAGTTGCAGCTAAGCCTCTTTATGAATGAAGGAGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATGAGTTGCAGCTAAGCCTCTTTATGAATGAAGGAGTGTGG  50

seq1  TTTTTATTATTAACAGGGTGTGAGAAGAAATTGTACTCCTTTGAAAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTATTAACAGGGTGTGAGAAGAAATTGTACTCCTTTGAAAGGTA  100

seq1  CCTTCTATTATACAACTTAAGGAAAATTCTCATGTCTATTCAAAGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTATTATACAACTTAAGGAAAATTCTCATGTCTATTCAAAGTTAAA  150

seq1  TGAATATCTACTCAATATTGTGTGTGCGTTTTGTCAATAAACCAAATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATCTACTCAATATTGTGTGTGCGTTTTGTCAATAAACCAAATCTC  200

seq1  TTCTTTAGAAGGTGGGGAGTAATGCTCACTCTTGTAACCCCCAGAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGAAGGTGGGGAGTAATGCTCACTCTTGTAACCCCCAGAATTTG  250

seq1  GAAGGCAGAATCATTGAAGGTTTGAGGCCAACCTAGGCTACATAGGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAATCATTGAAGGTTTGAGGCCAACCTAGGCTACATAGGGAGT  300

seq1  TCCTGGCTAGCCAGAGATGTGTGATAAAAATCATGTCTTTAAATCAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTAGCCAGAGATGTGTGATAAAAATCATGTCTTTAAATCAATCA  350

seq1  ATCAATCAATCAATCAGTCAGTCAGTCAGTCA----TCAGTCAGTCAGTC  396
      ||||||||||||||||||||||||||||||||    ||||||||||||||
seq2  ATCAATCAATCAATCAGTCAGTCAGTCAGTCATCAGTCAGTCAGTCAGTC  400

seq1  AGTCAGTCAGTCAGTCAGTCAGTCAACCAGTCAGTCAGTCAGTCAGTCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCAGTCAGTCAGTCAGTCAACCAGTCAGTCAGTCAGTCAGTCAG  450

seq1  TCAGTCAGTCAGTCAGTCAGTCAACCAGTCAGTCAGTCAGTGGCTAGAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGTCAGTCAGTCAGTCAACCAGTCAGTCAGTCAGTGGCTAGAGC  500

seq1  GATGGCTCAGTGCCTAAGAGCCCTTGTAGAGTTGCTCTTGCAGAGGACCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGTGCCTAAGAGCCCTTGTAGAGTTGCTCTTGCAGAGGACCG  550

seq1  GGGATGGGTTCCCAACATTTACATGGCGGCTCACATGGTGGAGAAACATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGTTCCCAACATTTACATGGCGGCTCACATGGTGGAGAAACATC  600

seq1  TGTAGTTCCAGTTCTAAGGGATCTGATACCTTCTTCTGACCTTTGTAGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCCAGTTCTAAGGGATCTGATACCTTCTTCTGACCTTTGTAGGC  650

seq1  ACCAGGCACTCACATGGCTCACGGACATAAATGCAGGCAACACGTTCATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCACTCACATGGCTCACGGACATAAATGCAGGCAACACGTTCATA  700

seq1  CACATAAAGTCAATATATTTACTGAGAAAACCTCAAACCAAAAAAATAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAGTCAATATATTTACTGAGAAAACCTCAAACCAAAAAAATAAC  750

seq1  ATAAAAATTCTCTTTTTATATCATTGTGCTAAGAATTGTGAATATTCATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTCTCTTTTTATATCATTGTGCTAAGAATTGTGAATATTCATT  800

seq1  TTAAATGCTCTTTAGACCTGTAGTCTGCTTGTGGTTTTCTTTCCAAAAAA  846
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAAATGCTCTTTAGACCTGTAGTCTGCTTGTGGTTTTCTTTCC-AAAAA  849

seq1  ATCTACAAAAGATTCATGAAAATATTTCTGAAATACTATTTGCATACATG  896
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCTACAAAAGATTCATGAAAATATTTCTG-AATACTATTTGCATACATG  898

seq1  GTAATGATTGGGCTGGAAGACCAGTTCTTGGCAGCCTTTGGCTGTTCGTT  946
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTAATGATTGGGCTGG-AGACCAGTTCTTGGCAGCCTTTGGCTGTTCGTT  947

seq1  GCAATTACATAATAACAATAGTAACAAACCAATTAAAGGTCTGTGGGGCT  996
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  GCAATTACATAATAAC-ATAGTAACAAACC-ATTAAAGGTCTGTGGGGCT  995

seq1  ATGATATAGAGTGTTACATTATAAACACGTCGTAAAAATGTTGCCAC-AA  1045
      |||||||||||||||||||||||||||||||   ||||||||||||| ||
seq2  ATGATATAGAGTGTTACATTATAAACACGTC--TAAAATGTTGCCACAAA  1043

seq1  AGAGCTGTGTGGTTTTCCCTTTTGAATCTGGTGTCTCCATATTTCAGAAT  1095
      |||||||||  | |||||||||   ||||||||||||| |||||||||||
seq2  AGAGCTGTGGTGCTTTCCCTTT--GATCTGGTGTCTCC-TATTTCAGAAT  1090

seq1  TTGAATGATTCAGAGCAATGCCAGGGAATGTAG-ATCTATTCAGAATTAC  1144
      ||| ||||||| |||| ||||||||| |||||| ||||| |||||| |||
seq2  TTG-ATGATTC-GAGC-ATGCCAGGG-ATGTAGAATCTA-TCAGAA-TAC  1134

seq1  CTTTGGGCCCCGTGGAAAGGAAATCAGATACAGATGAGCTTCCTCAATAG  1194
        ||||| || ||| |   | |||| |||   ||  | ||  ||| ||||
seq2  --TTGGG-CCGGTGCA---GGAATC-GAT--CGAGTAACT--CTC-ATAG  1172

seq1  TTGCTCCCACTAAACAG  1211
      |||||||||| ||||||
seq2  TTGCTCCCAC-AAACAG  1188

seq1: chr5_67415744_67416815
seq2: B6Ng01-162A15.g_68_1146 (reverse)

seq1  TCCA-GTCCAAAGGAACCAGAAGCCCTGGAACCGCACCTCGTAAATTCTC  49
      |||| ||||||| |||||||||||| || | |||||||| ||||| ||||
seq2  TCCAGGTCCAAA-GAACCAGAAGCCTTGAACCCGCACCTGGTAAA-TCTC  48

seq1  -TCTCCCCCA-GAAGTTGGTGTCTCCCCAATTTCTTTAAAGCCATCTATT  97
       ||||||||| |||||||   ||||||| |||||||||||||||||||||
seq2  TTCTCCCCCAGGAAGTTGTGTTCTCCCC-ATTTCTTTAAAGCCATCTATT  97

seq1  TATAGATGCTCACACAGGTCACTGCTGATCTGCCTGTCAACCT--GAAAA  145
      |||||||||||||||||||||||||||||||||||||||| ||   ||||
seq2  TATAGATGCTCACACAGGTCACTGCTGATCTGCCTGTCAAACTTGAAAAA  147

seq1  AGGGTT-CCACGGGTCCCCCGAAGCATACACGTGTGCATC-AATACAGTC  193
      |||||| |||||||||||| |||||||||||||||||||| |||||||||
seq2  AGGGTTACCACGGGTCCCCGGAAGCATACACGTGTGCATCAAATACAGTC  197

seq1  ATTC-AGCACTCTGG-AACCACTCATAAACTACAGCT-AAAGCTGACAGA  240
      |||| |||||||||| ||||||||||||| ||||||| ||||||||||||
seq2  ATTCAAGCACTCTGGAAACCACTCATAAA-TACAGCTAAAAGCTGACAGA  246

seq1  GTTCCTTTGT-CCAAGTTGTTTCTGTAAAACACGGGCTTTAGACTGCTGT  289
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTGTCCCAAGTTGTTTCTGTAAAACACGGGCTTTAGACTGCTGT  296

seq1  GTTCATTGCTCCGGGGATGGAAGTAGCAGAGCCTCACTGCGTAGGGAGCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGCTCCGGGGATGGAAGTAGCAGAGCCTCACTGCGTAGGGAGCA  346

seq1  AATGCTTGCCAGAAATTCTGTGCGCTTGGCACCTCCAGCAGACGTGTGCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGCCAGAAATTCTGTGCGCTTGGCACCTCCAGCAGACGTGTGCT  396

seq1  GTCTGGATGTTTGAAAGGAAGCAAGCCACACACTTCCTCCTTTCATCAGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATGTTTGAAAGGAAGCAAGCCACACACTTCCTCCTTTCATCAGT  446

seq1  GTGGTGTGAAGAATGCCACAAACCCACTACACATCTCTACAGCCTTTTTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGAAGAATGCCACAAACCCACTACACATCTCTACAGCCTTTTTG  496

seq1  ATTTTCCTAGAGTTGCTTCTGCATAGCCTGTTACTATGACATCTTGACCT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTAGAGTTGCTTCTGCATAGCCTGTTACTATGACATCTTGACCT  546

seq1  TTAACTCTTAAAAAAAAAAAAATCCCCACTGAGTACAGGTGTAAAAGCTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTAAAAAAAAAAAAATCCCCACTGAGTACAGGTGTAAAAGCTT  596

seq1  TCAGGAACTCAGACTGGCCAGTTCCACTGCCCACTGTCCACGTCGTCAGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAACTCAGACTGGCCAGTTCCACTGCCCACTGTCCACGTCGTCAGG  646

seq1  TTTTGTGTGTATTGTGGTAAGATGTTTTACATGTTAGGTTCAGAGACGGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGTATTGTGGTAAGATGTTTTACATGTTAGGTTCAGAGACGGT  696

seq1  CAGTCCCTGAGTCGACCCCAACTGACCCACCTTGACATGTGGAATGTGTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTGAGTCGACCCCAACTGACCCACCTTGACATGTGGAATGTGTT  746

seq1  CTGCTCAGTTCTCACCCAGTTTCATGGATTTCTGTTTGTTCTATTTTGCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTTCTCACCCAGTTTCATGGATTTCTGTTTGTTCTATTTTGCC  796

seq1  ATCTGATCTAGAGCTGCCTGGCAGTGCCCCGCTGAGAGTTCAGAACTCTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCTAGAGCTGCCTGGCAGTGCCCCGCTGAGAGTTCAGAACTCTT  846

seq1  GGCGACGGTCCCAGTTTTTCTCCCAGTCAGGTAAACAACATACCAGGTCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACGGTCCCAGTTTTTCTCCCAGTCAGGTAAACAACATACCAGGTCA  896

seq1  CTGGCCTTTTCTTTATGTAAAAAATCCATGTTGGGTCAACCAATGTCGTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTTTCTTTATGTAAAAAATCCATGTTGGGTCAACCAATGTCGTT  946

seq1  TGGCACTTGTCTTCCTTTCTGATTTTAGATCTTTTTCTTTTTTTTAAAGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTGTCTTCCTTTCTGATTTTAGATCTTTTTCTTTTTTTTAAAGA  996

seq1  GAGATGCTTGTTTGTGACACACAGTTAGCAATGAGCTTGTTCCTTGACAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTTGTTTGTGACACACAGTTAGCAATGAGCTTGTTCCTTGACAC  1046

seq1  CAGCACGTGTTGTACTAAAACCGGGAGGAATTC  1072
      |||||||||||||||||||||||||||||||||
seq2  CAGCACGTGTTGTACTAAAACCGGGAGGAATTC  1079