BAC Information

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BAC

Clone NameB6Ng01-162B05
Chromosome5 (Build37)
Map Location 101,865,002 - 102,002,155
singlet/doubletdoublet
Overlap geneLOC100040920
Upstream geneLin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2
Downstream geneNkx6-1, Cds1, Wdfy3, EG666515, EG666527, LOC625780, Arhgap24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162B05.bB6Ng01-162B05.g
ACCDH955006DH955007
length1,1771,103
definitionDH955006|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B05, 5' end.DH955007|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,865,002 - 101,866,193)(102,001,025 - 102,002,155)
sequence
gaattcagtctacttcagtaatggtgccaaggaccatggctgtcagaaag
ccatggagtgctgtggggtctgtgttcactactctttcctctctagtccc
tctgatctctcccacaccctctataaaggcagtttcaaagtgcttaacct
gggcaaaccaaggaaccaagttccacaaccatccttcagtgttctacctg
tgacggaaggataaaaggaatccagggcttaagactttcctacgcaagat
cctcaaggcagagaccaggaccccactattctaggatcaggatcttggct
ccatcccacaatagtcacagctttgctttcagtgtcctctgtaggtcagc
tgcctttccactcatagcctagacatgatagtcaatagctgaaggacata
aggactctttaaatgttggacacagaaggcctctggttgctttgttgtct
gttttcttctgttgttttcttttatcatgcctggtattttttcttctcaa
ggcctttcaagaagttaagaagtgcaagcttagcgtccagtgttgatata
tcatataacaagatcataagcactccataaccattcgcttaccactgttc
ctatataccataatccactgaaatgccacagccttgggtgagtgtatacc
acaccactgtgcatgcaagtaccatagaaactgtatgctgcaacatacta
gatactgtgttatcaccactgactgacagtcagccctgggggcatcacta
caatgtgattgacaggggattctaatctgaattccatcttaagagccaga
tttctgggcaggtctctaaaccttggttctgatgcttcttatgcaaccag
aagctaacacaagtgccaaaatgtgattctgggaagcagatgtgttagtg
tgcatgaacagggaaggaagagaggccacagaaagatcagtcacatagta
gccattaccacaggttctcagttcattggactgtctgaagatgttttgaa
gactgttctcaaacatgtcagcaagggtgtaaagaggaaagtgtgcccct
ttggtcccataccctgatggtcaatgatgacctgtgggtggtcacttcat
caccttcaggtggtattgacagtctggatgctgcctttcaggacaagtcc
ttcaggacctggtaactgcactggcaa
gaattctgtctgatttatcaggcagctgcgccgccgccgagggcgcgcat
ggggtgaactgggaaggactggaggtggagtgaggtggctagcaggacca
ggctgactgtggagctccaggggtgacctcacagttacccccagatgttc
agaccatttctgaatgcctctataagggtgttgatggggtgccattttct
gggcttgctaaactttgggaagcaagcaagcaagacttcaggattttaat
gcccactttatcccgtgacagacgtagggatgcttaaaaagtggcctgac
ctttccagtatcccttgctgaccggttgactggctgttcctattcaacat
tccgtcaacttcagcaacttccgcatttcttccctttttagcaccaacgt
cactgaccagttactgagaccatggccttttatagttgagtcttggctaa
gcatgcttactttgcattgtgccctgagaacacatttctcttctttttcc
tccaggtgaagaaaaacagtgaattgaaaagtgtgcagaaagataagagt
ccgtgggcctcagtgtcccgaatttccctgctgcagctcatgtcagaggc
cgagcaatgtccgtatctttaaatagacaggtaatggacttgactttaag
ggatgcattctgattgggactaactccaaatagtgaggtgtgcgggataa
aaggagcgtctactgcaaacattttccaagaagtcctttgtatttttagc
agtacctctgggcatagctacttaccattcattgaattccttaaggctcc
atttacccaaataacttccttaatgtctagattctttctctgtcctggcc
cgagactctgcccacttgatccactcttgtccattaaggtagtaatattt
actctagatgccctgctggatatacaactgctatcagaaggggccgagcg
actgagaaaggtaaacctccttcgaaacacacttagagtccccattaatg
actgaccagcttgtttcatatagagccacgacagatctgggaatacgatt
gaggaaagagaacttaatagcttcctatggcttcataatctaacacgtgt
tag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_101865002_101866193
seq2: B6Ng01-162B05.b_47_1223

seq1  GAATTCAGTCTACTTCAGTAATGGTGCCAAGGACCATGGCTGTCAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTACTTCAGTAATGGTGCCAAGGACCATGGCTGTCAGAAAG  50

seq1  CCATGGAGTGCTGTGGGGTCTGTGTTCACTACTCTTTCCTCTCTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGTGCTGTGGGGTCTGTGTTCACTACTCTTTCCTCTCTAGTCCC  100

seq1  TCTGATCTCTCCCACACCCTCTATAAAGGCAGTTTCAAAGTGCTTAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTCTCCCACACCCTCTATAAAGGCAGTTTCAAAGTGCTTAACCT  150

seq1  GGGCAAACCAAGGAACCAAGTTCCACAACCATCCTTCAGTGTTCTACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAACCAAGGAACCAAGTTCCACAACCATCCTTCAGTGTTCTACCTG  200

seq1  TGACGGAAGGATAAAAGGAATCCAGGGCTTAAGACTTTCCTACGCAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGAAGGATAAAAGGAATCCAGGGCTTAAGACTTTCCTACGCAAGAT  250

seq1  CCTCAAGGCAGAGACCAGGACCCCACTATTCTAGGATCAGGATCTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGCAGAGACCAGGACCCCACTATTCTAGGATCAGGATCTTGGCT  300

seq1  CCATCCCACAATAGTCACAGCTTTGCTTTCAGTGTCCTCTGTAGGTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCACAATAGTCACAGCTTTGCTTTCAGTGTCCTCTGTAGGTCAGC  350

seq1  TGCCTTTCCACTCATAGCCTAGACATGATAGTCAATAGCTGAAGGACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCCACTCATAGCCTAGACATGATAGTCAATAGCTGAAGGACATA  400

seq1  AGGACTCTTTAAATGTTGGACACAGAAGGCCTCTGGTTGCTTTGTTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTTTAAATGTTGGACACAGAAGGCCTCTGGTTGCTTTGTTGTCT  450

seq1  GTTTTCTTCTGTTGTTTTCTTTTATCATGCCTGGTATTTTTTCTTCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTCTGTTGTTTTCTTTTATCATGCCTGGTATTTTTTCTTCTCAA  500

seq1  GGCCTTTCAAGAAGTTAAGAAGTGCAAGCTTAGCGTCCAGTGTTGATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCAAGAAGTTAAGAAGTGCAAGCTTAGCGTCCAGTGTTGATATA  550

seq1  TCATATAACAAGATCATAAGCACTCCATAACCATTCGCTTACCACTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAACAAGATCATAAGCACTCCATAACCATTCGCTTACCACTGTTC  600

seq1  CTATATACCATAATCCACTGAAATGCCACAGCCTTGGGTGAGTGTATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACCATAATCCACTGAAATGCCACAGCCTTGGGTGAGTGTATACC  650

seq1  ACACCACTGTGCATGCAAGTACCATAGAAACTGTATGCTGCAACATACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTGTGCATGCAAGTACCATAGAAACTGTATGCTGCAACATACTA  700

seq1  GATACTGTGTTATCACCACTGACTGACAGTCAGCCCTGGGGGCATCACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTGTTATCACCACTGACTGACAGTCAGCCCTGGGGGCATCACTA  750

seq1  CAATGTGATTGACAGGGGATTCTAATCTGAATTCCATCTTAAGAGCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGATTGACAGGGGATTCTAATCTGAATTCCATCTTAAGAGCCAGA  800

seq1  TTTCTGGGCAGGTCTCTAAACCTTGGTTCTGATGCTTCTTATGCAACCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGCAGGTCTCTAAACCTTGGTTCTGATGCTTCTTATGCAACCAG  850

seq1  AAGCTAACACAAGTGCCAAAATGTGATTCTGGGAAGCAGATGTGTTAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACACAAGTGCCAAAATGTGATTCTGGGAAGCAGATGTGTTAGTG  900

seq1  TGCATGAACAGGGAAGGAAGAAGAGGCCACAGAAAGATCAGTCACATAGT  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCATGAACAGGGAAGGAAG-AGAGGCCACAGAAAGATCAGTCACATAGT  949

seq1  AGCCATTACCACAGGTTCTCAGTTCCATTGGACTGTCTGAAGATGTTTTG  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCCATTACCACAGGTTCTCAGTT-CATTGGACTGTCTGAAGATGTTTTG  998

seq1  -AGACTGTTCTCAAACATGTCAGGCCAGGGTGTAAAAGAGGAAAGTGTGC  1049
       ||||||||||||||||||||| || ||||||| ||||||||||||||||
seq2  AAGACTGTTCTCAAACATGTCA-GCAAGGGTGT-AAAGAGGAAAGTGTGC  1046

seq1  CCCTTTGGTTCCCATACCCTGATGGTCAATGATGACCCTGTGTGTGTCAA  1099
      |||||||| |||||||||||||||||||||||||| |||||| |||   |
seq2  CCCTTTGG-TCCCATACCCTGATGGTCAATGATGA-CCTGTGGGTGGTCA  1094

seq1  CTCCATCACACTTCCAGGTTGGTATTTGACAAGTCCTGAATGCTGCCCTT  1149
      || |||||| ||| |||| ||||| ||||| ||| ||| ||||||||  |
seq2  CTTCATCAC-CTT-CAGG-TGGTA-TTGAC-AGT-CTGGATGCTGCC--T  1136

seq1  TCCAGGACAAATCCCTCCAGCACCTGGGTAACTGCACTGGCAA  1192
      | |||||||| | ||| ||| |||| |||||||||||||||||
seq2  TTCAGGACAAGT-CCTTCAGGACCT-GGTAACTGCACTGGCAA  1177

seq1: chr5_102001025_102002155
seq2: B6Ng01-162B05.g_68_1170 (reverse)

seq1  CTAACACGTGCTTAGATTTATGAAACGCATAGGAAGACTTATTTAAAGTT  50
      |||||||||| ||||| ||||||| | |||||||||   ||||  ||| |
seq2  CTAACACGTG-TTAGA-TTATGAAGC-CATAGGAAG--CTATT--AAG-T  42

seq1  TCTCTTTTCCTCCAATCCGTATTCCCAGATCTTGTCCCGTGCTTCTTATA  100
      |||| |||||| |||| |||||||||||||| |||  ||||  || ||||
seq2  TCTC-TTTCCT-CAAT-CGTATTCCCAGATC-TGT--CGTGGCTC-TATA  85

seq1  TTGAAACAGCCTGGTCAGTCATTTAATGGGGACTCTTAAAAGTGTGTTTT  150
       |||||||  ||||||||||| ||||||||||||||   |||||||||| 
seq2  -TGAAACAAGCTGGTCAGTCA-TTAATGGGGACTCT---AAGTGTGTTT-  129

seq1  CGGAAGGAGGTTTTACCTTTCCTCAGTCGCTCGGCCCCTTCCTGATAGCA  200
        |||||||| ||||||||| ||||||||||||||||||| |||||||||
seq2  -CGAAGGAGG-TTTACCTTT-CTCAGTCGCTCGGCCCCTT-CTGATAGCA  175

seq1  GTTGTATATTCCAGCAGGGGCATCTAGAGTAAATATTACTACCTTAATGG  250
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  GTTGTATA-TCCAGCA-GGGCATCTAGAGTAAATATTACTACCTTAATGG  223

seq1  ACAAGAGTGGATCAAGTGGGCAGAGTCTCGGGCCAGGACAGAGAAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTGGATCAAGTGGGCAGAGTCTCGGGCCAGGACAGAGAAAGAAT  273

seq1  CTAGACATTAAGGAAGTTATTTGGGTAAATGGAGCCTTAAGGAATTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACATTAAGGAAGTTATTTGGGTAAATGGAGCCTTAAGGAATTCAAT  323

seq1  GAATGGTAAGTAGCTATGCCCAGAGGTACTGCTAAAAATACAAAGGAACT  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAATGGTAAGTAGCTATGCCCAGAGGTACTGCTAAAAATACAAAGG-ACT  372

seq1  TCTTGGAAAATGTTTGCAGTAGACGCTCCTTTTATCCCGCACACCTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAAATGTTTGCAGTAGACGCTCCTTTTATCCCGCACACCTCACT  422

seq1  ATTTGGAGTTAGTCCCAATCAGAATGCATCCCTTAAAGTCAAGTCCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGTTAGTCCCAATCAGAATGCATCCCTTAAAGTCAAGTCCATTA  472

seq1  CCTGTCTATTTAAAGATACGGACATTGCTCGGCCTCTGACATGAGCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTATTTAAAGATACGGACATTGCTCGGCCTCTGACATGAGCTGCA  522

seq1  GCAGGGAAATTCGGGACACTGAGGCCCACGGACTCTTATCTTTCTGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAATTCGGGACACTGAGGCCCACGGACTCTTATCTTTCTGCACA  572

seq1  CTTTTCAATTCACTGTTTTTCTTCACCTGGAGGAAAAAGAAGAGAAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAATTCACTGTTTTTCTTCACCTGGAGGAAAAAGAAGAGAAATGT  622

seq1  GTTCTCAGGGCACAATGCAAAGTAAGCATGCTTAGCCAAGACTCAACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGGGCACAATGCAAAGTAAGCATGCTTAGCCAAGACTCAACTAT  672

seq1  AAAAGGCCATGGTCTCAGTAACTGGTCAGTGACGTTGGTGCTAAAAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCATGGTCTCAGTAACTGGTCAGTGACGTTGGTGCTAAAAAGGG  722

seq1  AAGAAATGCGGAAGTTGCTGAAGTTGACGGAATGTTGAATAGGAACAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGCGGAAGTTGCTGAAGTTGACGGAATGTTGAATAGGAACAGCC  772

seq1  AGTCAACCGGTCAGCAAGGGATACTGGAAAGGTCAGGCCACTTTTTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACCGGTCAGCAAGGGATACTGGAAAGGTCAGGCCACTTTTTAAGC  822

seq1  ATCCCTACGTCTGTCACGGGATAAAGTGGGCATTAAAATCCTGAAGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTACGTCTGTCACGGGATAAAGTGGGCATTAAAATCCTGAAGTCTT  872

seq1  GCTTGCTTGCTTCCCAAAGTTTAGCAAGCCCAGAAAATGGCACCCCATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTGCTTCCCAAAGTTTAGCAAGCCCAGAAAATGGCACCCCATCA  922

seq1  ACACCCTTATAGAGGCATTCAGAAATGGTCTGAACATCTGGGGGTAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTATAGAGGCATTCAGAAATGGTCTGAACATCTGGGGGTAACTG  972

seq1  TGAGGTCACCCCTGGAGCTCCACAGTCAGCCTGGTCCTGCTAGCCACCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCACCCCTGGAGCTCCACAGTCAGCCTGGTCCTGCTAGCCACCTC  1022

seq1  ACTCCACCTCCAGTCCTTCCCAGTTCACCCCATGCGCGCCCTCGGCGGCG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCTCCAGTCCTTCCCAGTTCACCCCATGCGCGCCCTCGGCGGCG  1072

seq1  GCGCAGCTGCCTGATAAATCAGACAGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  GCGCAGCTGCCTGATAAATCAGACAGAATTC  1103